Neal Richardson created ARROW-6957: -------------------------------------- Summary: [CI][Crossbow] Nightly R with sanitizers build fails installing dependencies Key: ARROW-6957 URL: https://issues.apache.org/jira/browse/ARROW-6957 Project: Apache Arrow Issue Type: Bug Components: Continuous Integration, R Reporter: Neal Richardson
See https://circleci.com/gh/ursa-labs/crossbow/4006 for example. Failure looks like this: {code} ... g++ -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++11 -I"/usr/local/RDsan/lib/R/include" -DNDEBUG -I'/usr/local/RDsan/lib/R/site-library/Rcpp/include' -I'/usr/local/RD/lib/R/library/BH/include' -I/usr/local/include -I. -Ircon -fpic -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -Wall -pedantic -c TokenizerWs.cpp -o TokenizerWs.o cc1plus: out of memory allocating 65536 bytes after a total of 31866880 bytes cc1plus: out of memory allocating 65536 bytes after a total of 52080640 bytes virtual memory exhausted: Cannot allocate memory virtual memory exhausted: Cannot allocate memory /usr/local/RDsan/lib/R/etc/Makeconf:175: recipe for target 'Collector.o' failed make[1]: *** [Collector.o] Error 1 make[1]: *** Waiting for unfinished jobs.... /usr/local/RDsan/lib/R/etc/Makeconf:175: recipe for target 'CollectorGuess.o' failed make[1]: *** [CollectorGuess.o] Error 1 /usr/local/RDsan/lib/R/etc/Makeconf:175: recipe for target 'Reader.o' failed make[1]: *** [Reader.o] Error 1 /usr/local/RDsan/lib/R/etc/Makeconf:175: recipe for target 'TokenizerWs.o' failed make[1]: *** [TokenizerWs.o] Error 1 make[1]: Leaving directory '/tmp/RtmpvSXO7m/R.INSTALL992bafde57/readr/src' ERROR: compilation failed for package ‘readr’ * removing ‘/usr/local/RDsan/lib/R/site-library/readr’ Error: Failed to install 'decor' from GitHub: (converted from warning) installation of one or more packages failed, probably ‘readr’ Execution halted ERROR: Service 'r-sanitizer' failed to build: The command '/bin/sh -c RDsan -e "remotes::install_github('romainfrancois/decor')"' returned a non-zero code: 1 {code} Some thoughts: * This dependency is not needed to run the tests--it is a developer dependency, only needed when you're editing the Rcpp code. So we could conditionally not install it if we're on CI. * The docker code around this changed in ARROW-6918 last week, around the time this started failing. The installation of this package was moved to a different part of the job, and it appears that {{MAKEVARS=-j8}} was added. Maybe that's causing more memory to be used concurrently? (Also, I would be shocked if CircleCI gave us a VM with 8 cores, so this seems wasteful and should probably be tuned to whatever the current system has.) cc [~apitrou][~fsaintjacques] -- This message was sent by Atlassian Jira (v8.3.4#803005)