I'm with you on it being weird. Ok. Here's a link to that output pastebin.com/rA4P7eCh
I'm not working on a VM. And the network is my own. Thanks, Nic Sent from my HTC phone. ----- Reply message ----- From: "Michael Joyce" <jo...@apache.org> To: "nic pederson" <nicpeder...@gmail.com> Cc: "chris.a.mattm...@nasa.gov" <chris.a.mattm...@nasa.gov>, "dev@climate.apache.org" <dev@climate.apache.org> Subject: New Student - Caltech-JPL Summer School on Big Data Analytics - Need Help Setting up OCW Date: Tue, Jan 13, 2015 7:34 AM More than happy to do a google hangout or something similar to try to resolve any issues you're having. Today is jam packed for me unfortunately so it would have to be a different day. Perhaps someone else will be able to help though. I find it odd that you're running into permission problems here. Are you running this in a VM or on a local system that you have control off? I'm not really sure why you wouldn't be able to edit something in your home dir unless root wrote something. Can you run "ls -l" on the ocw/bin directory and link the output? -- Joyce On Mon, Jan 12, 2015 at 10:07 PM, nic pederson <nicpeder...@gmail.com> wrote: Can we do a team viewer or some other remote control? I am feeling a little deflated. N On Jan 12, 2015 9:07 PM, "nic pederson" <nicpeder...@gmail.com> wrote:When I run it from the easy-ocw folder, is says permission denied. When I run it with sudo, it says the same thing... On Jan 12, 2015 8:51 PM, "nic pederson" <nicpeder...@gmail.com> wrote:It returns: bash: ocw/bin/activate: No such file or directory On Jan 12, 2015 8:35 PM, "Michael Joyce" <jo...@apache.org> wrote:Try running the above command instead of using gedit. If it gives you permission denied try prepending "sudo " to the command and typing your admin password when prompted. -- Joyce On Mon, Jan 12, 2015 at 8:23 PM, nic pederson <nicpeder...@gmail.com> wrote: Ok. Opened it in gedit. Added the line to the end, but it won't let me save. Says it's read only N On Jan 12, 2015 8:14 PM, "Michael Joyce" <jo...@apache.org> wrote:You could use an editor such as nano (not sure if this would be installed), emacs or vim (both of which would be potentially challenging for you to use most likely). You should be able to run the following. echo "export PATH=\"/home/nic/climate/anaconda/bin/:$PATH\"" >> ocw/bin/activate ">>" redirects input to the supplied output file. In this case the input is the result of running echo "export PATH=\"/home/nic/climate/anaconda/bin/:$PATH\"" which is simply export PATH="/home/nic/climate/anaconda/bin/:$PATH" And the output file is the activate script that we want to adjust. Hopefully that helps a bit. If it doesn't work let me know. -- Joyce On Mon, Jan 12, 2015 at 8:09 PM, nic pederson <nicpeder...@gmail.com> wrote: I didn't add the line above because I'm not quite sure how. How do I edit the activate file? On Jan 12, 2015 8:03 PM, "Michael Joyce" <jo...@apache.org> wrote:That is the virtualenv one. The anaconda one should be /home/nic/climate/anaconda/bin/python. Note that if you added that line above you will need to deactivate and reactivate the virtualenv for it to take effect. If you want to test manually what I mentioned above you could try 0. Deactivate the virtualenv (just to be safe) 1. initialize the virtualenv 2. run `export PATH="/home/nic/climate/anaconda/bin/:$PATH"` 3. run `which python` and see what you get -- Joyce On Mon, Jan 12, 2015 at 7:55 PM, nic pederson <nicpeder...@gmail.com> wrote: Which python produces ~/climate/easy/easy-ocw/ocw/bin/python On Jan 12, 2015 7:42 PM, "Michael Joyce" <jo...@apache.org> wrote:Ok not quite as confident now as I thought but try this. I think you might be running into an annoying little bug and/or a gap in the documentation here. Try adding this to the end of your ocw/bin/activate file and see if that fixes this. export PATH=/home/nic/climate/anaconda/bin:$PATH I think we're missing an export of a path in the install script when you run a virtualenv and it's causing the wrong python to be called. You can check by running "which python" and see if you get the anaconda one or the virtualenv one. You want to be getting the anaconda one. Hopefully that's the problem/solution. -- Joyce On Mon, Jan 12, 2015 at 7:33 PM, Michael Joyce <jo...@apache.org> wrote: Ah ok I think I know what the problem is. One second to check and see. -- Joyce On Mon, Jan 12, 2015 at 7:25 PM, nic pederson <nicpeder...@gmail.com> wrote: Here is my bash Pastebin.com/7ULyyng3 On Jan 12, 2015 7:12 PM, "Michael Joyce" <jo...@apache.org> wrote:Trying running source ocw/bin/activate from ~/climate/easy-ocw and see if that works -- Joyce On Mon, Jan 12, 2015 at 7:10 PM, nic pederson <nicpeder...@gmail.com> wrote: "source activate" when in ~/climate/easy-ocw/ocw/bin On Jan 12, 2015 7:05 PM, "Michael Joyce" <jo...@apache.org> wrote:Hey Nic, What command are you using to start the environment? -- Joyce On Mon, Jan 12, 2015 at 7:00 PM, nicpeder...@gmail.com <nicpeder...@gmail.com> wrote: Hi guys, I was still having trouble, so just did a fresh install of ubuntu. Everything went fine until I tried to activate OCW. I get an error that says "error: no environment provided" Thanks again Nic Sent from my HTC phone. ----- Reply message ----- From: "Michael Joyce" <jo...@apache.org> To: "nic pederson" <nicpeder...@gmail.com> Cc: "dev@climate.apache.org" <dev@climate.apache.org>, "chris.a.mattm...@nasa.gov" <chris.a.mattm...@nasa.gov> Subject: New Student - Caltech-JPL Summer School on Big Data Analytics - Need Help Setting up OCW Date: Mon, Jan 12, 2015 2:32 PM You should be able to run "rm -r /home/nic/Learning/climate/anaconda" (without quotes and make sure I actually got that directory correct ;) Then you should be able to run the Anaconda script the same way the install-ubuntu.sh script does. Namely: bash Anaconda-1.9.2-Linux-x86_64.sh That .sh file should still be in the easy-ocw folder (assuming you ran ./install-ubuntu.sh from /climate/easy-ocw/). When you go through the install just make sure you put the directory where you want it instead of the default. From above I think you'll want: /home/nic/Learning/climate/ If you get stuck let us know! -- Joyce On Mon, Jan 12, 2015 at 2:08 PM, nic pederson <nicpeder...@gmail.com> wrote: Thanks for looking. That's exactly what I did... What as the best way to wipe/reinstall? Im fairly new to Linux and command line in general. Nic On Jan 12, 2015 1:51 PM, "Michael Joyce" <jo...@apache.org> wrote:Ok after looking around a bit and checking your RC my guess is that you did something along the lines of: Ran install-ubuntu.sh Decided to move where Anaconda was installed by cp-ing (or something) it somewhere else ... Ended up where we're at If that is the case then I think your problem is that you can't move Anaconda around after the initial install. If you want it in a different place you'll need to do that at install-time. Check this convo [1] for a bit more info. Basically just reinstall Anaconda where you want it and blow out the old install just to be safe. The install script forces you to install it in the default location. Patches are more than welcome to fix this ;) If that's not what you did then what did you do. Maybe a bit more info will get us pointed in the right direction =) You can also remove the following line from your RC. This looks like an input error when running install-ubuntu.sh export PYTHONPATH=~Learning/climate/easy-owc/install-ubuntu.sh:~Learning/climate/easy-owc/install-ubuntu.sh/ocw [1] https://groups.google.com/a/continuum.io/forum/#!msg/anaconda/LcaXE25qElM/VKWYghrjb98J -- Joyce On Mon, Jan 12, 2015 at 1:23 PM, nicpeder...@gmail.com <nicpeder...@gmail.com> wrote: .bashrc pastebin.com/P4Ux1XJm "conda info" bash: /home/nic/Learning/climate/anaconda/bin/conda: /home/nic/anaconda/bin/python: bad interpreter: no such file or directory Sent from my HTC phone. ----- Reply message ----- From: "Michael Joyce" <jo...@apache.org> To: "nic pederson" <nicpeder...@gmail.com> Cc: "dev@climate.apache.org" <dev@climate.apache.org>, "chris.a.mattm...@nasa.gov" <chris.a.mattm...@nasa.gov> Subject: New Student - Caltech-JPL Summer School on Big Data Analytics - Need Help Setting up OCW Date: Mon, Jan 12, 2015 12:58 PM Mkay. Can you please post your entire bashrc (pastebin link would probably be best) and the output of "conda info"? It doesn't seem to be cooperating with regards to where it should look for conda packages. I'm thinking there's some residual config from a previous install or I'm forgetting something really obvious. Worst case we might need to blow out the entire Anaconda install and redo it (FUN!). Hopefully it's just something stupid in a config somewhere we can update. -- Joyce On Mon, Jan 12, 2015 at 12:51 PM, nic pederson <nicpeder...@gmail.com> wrote: /home/nic/Learning/climate/anaconda/bin/conda On Jan 12, 2015 12:47 PM, "Michael Joyce" <jo...@apache.org> wrote:Strange. When you run "which conda" what do you see? -- Joyce On Mon, Jan 12, 2015 at 12:40 PM, nic pederson <nicpeder...@gmail.com> wrote: That did it! Except now I cannot activate OWC. When I activate, I get a line like: bash: (correct path)/climate/anaconda/bin/conda: /home/nic/anaconda/bin/python: bad interpreter: no such file or directory Thanks again for your help. Nic On Jan 12, 2015 12:08 PM, "Michael Joyce" <jo...@apache.org> wrote:No problem Nic, You should have a line in your bashrc similar to the following. export PATH=~/Anaconda/bin:$PATH If you replace the assumed path with the location where Anaconda actually is you should be golden. If that doesn't fix if for you though let us know. -- Joyce On Mon, Jan 12, 2015 at 12:00 PM, nic pederson <nicpeder...@gmail.com> wrote: Thanks guys! That sounds about right. The missing module is numpy when owc is activated. (It's filenames when it's deactivated)... Also, I feel like I may have made a bit of a mess of the file structure in trying to move/reinstall Anaconda a couple times. Thanks for all your help. Nic On Jan 12, 2015 11:23 AM, "Michael Joyce" <jo...@apache.org> wrote:Hi Nic (and Chris), I'm guessing from your question that you are installing onto Ubuntu with the last release of OCW (0.4). You should be fine on 14.10, the old scripts were only tested on 12.04 so we list that explicitly. Of course there is still a possibility that you might run into some problems. If you're pulling off the latest master then the Ubuntu script is tested on 12.04 and 14.04. What modules are failing for you? If it's something like numpy/scipy then you probably have an issue with the location of the Anaconda bin and your path. This could be a result of Anaconda being installed in a different spot than expected or it could be a bug in the install scripts. If you're having problems with some OCW modules not importing then it probably a problem with the PYTHONPATH not being set as expected. Let us know what problems you're seeing and I'm sure we can get it sorted quickly. -- Joyce On Mon, Jan 12, 2015 at 8:10 AM, Mattmann, Chris A (3980) <chris.a.mattm...@jpl.nasa.gov> wrote: Hi Nic, thanks for your question and am forwarding to the Apache OCW list for some more help! Cheers, Chris ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ Chris Mattmann, Ph.D. Chief Architect Instrument Software and Science Data Systems Section (398) NASA Jet Propulsion Laboratory Pasadena, CA 91109 USA Office: 168-519, Mailstop: 168-527 Email: chris.a.mattm...@nasa.gov WWW: http://sunset.usc.edu/~mattmann/ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ Adjunct Associate Professor, Computer Science Department University of Southern California, Los Angeles, CA 90089 USA ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ -----Original Message----- From: Nic <nicpeder...@gmail.com> Date: Monday, January 12, 2015 at 8:08 AM To: Chris Mattmann <chris.a.mattm...@nasa.gov> Subject: New Student - Caltech-JPL Summer School on Big Data Analytics - Need Help Setting up OCW >Hi Chris! > >I'm really excited for this class, but I'm a little hung up on Day 1 >installations. Long story short, I've setup PyLint and OCW, but OCW >seems to be unable to find some modules. Could this be because I >installed files (i suspect anaconda) in the wrong folders? > >I'm running Ubuntu 14.10 (Lenovo IdeaPad). I noticed that OCW install >instructions say that I should be running 12.04. I have 14.10 installed. >I'm trying to wipe and restart Ubuntu with 12.04 now, but am having >trouble getting it to boot. Can I run 14.10 with OCW? > >I've checked the discussion boards and have done a bit of research >already, but not much fruit. > >Thanks so much and I look forward to hearing from you, >Nic Pederson > >541.953.1520 >@nicpederson > >
