Jeremy Lewi created CRUNCH-369:
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             Summary: Crunch doesn't use custom getSplits functions of 
FileInputFormat subclasses
                 Key: CRUNCH-369
                 URL: https://issues.apache.org/jira/browse/CRUNCH-369
             Project: Crunch
          Issue Type: Bug
          Components: IO
    Affects Versions: 0.9.0
            Reporter: Jeremy Lewi
            Priority: Minor


Suppose I create a source for a custom InputFormat which is a subclass of 
FileInputFormat; e.g.

TableSource<LongWritable, FastQWritable> source = From.formattedFile(
     inputFile, FastQInputFormatNew.class, LongWritable.class,
      FastQWritable.class);

where FastQInputFormat is a subclass of FileInputFormat.

This won't work as expected because by default CrunchInputFormat.getSplits will 
end up using CrunchCombineFileInputFormat to split the file. This doesn't work 
because my custom FIleInputFormat uses a custom file splitter.

I can work around this by explicitly disabling the combining: e.g

source.inputConf(RuntimeParameters.DISABLE_COMBINE_FILE, 
Boolean.TRUE.toString());

but this doesn't strike me as the best solution. If I tell Crunch to use a 
custom InputFormat I shouldn't have to specify a second config option in order 
to tell Crunch to respect the getSplits function in my custom InputFormat.

I think CrunchInputFormat.getSplits should check that the format class exactly 
matches FileInputFormat; i.e. it isn't a subclass. For subclasses Crunch should 
use the getsplits function in the custom InputFormat class. I think changing 
the check to the following might work

if (format.getClass().equals(FileInputFormat.class) &&
    !conf.getBoolean(RuntimeParameters.DISABLE_COMBINE_FILE, true) 










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