After a build, do you end up with TypeSystem.xml in ctakes-drug-ner-res/target/classes/org/apache/ctakes/drugner/types/
I am not a maven guru but what you described (adding the ctakes-drug-ner-res) sounds like it should work. - James > -----Original Message----- > From: [email protected] [mailto:dev- > [email protected]] On Behalf Of Kannan > Thiagarajan > Sent: Monday, May 06, 2013 9:14 PM > To: [email protected] > Subject: Re: export runnable jar issue > > I updated my local "DrugCNP2LookupWindow.xml" with the latest but the > problem persists. > > Caused by: org.apache.uima.util.InvalidXMLException: An import could not > be resolved. No .xml file with name > "org.apache.ctakes.drugner.types.TypeSystem" was found in the class path > or data path. (Descriptor: > file:/C:/cTAKES_Workspace2/ctakes/ctakes-drug- > ner/desc/analysis_engine/DrugCNP2LookupWindow.xml) > > Please let me know if there are any other files that I need to pull-in. > > Thanks > > > > On Mon, May 6, 2013 at 7:39 PM, Masanz, James J. > <[email protected]>wrote: > > > > > I just checked in a fix today for this actually. > > CTAKES-194 > > InvalidXMLException: An import could not be resolved. > > org.apache.ctakes.drugner.types.Typesystem DrugCNP2LookupWindow.xml > > https://issues.apache.org/jira/browse/CTAKES-194 > > > > If you check out the latest you should get the fix. or fix the casing > > of TypeSystem so there is a capital S. > > > > Regards, > > James Masanz > > > > > -----Original Message----- > > > From: [email protected] [mailto: > > dev- > > > [email protected]] On Behalf Of > > > Kannan Thiagarajan > > > Sent: Monday, May 06, 2013 6:12 PM > > > To: [email protected] > > > Subject: Re: export runnable jar issue > > > > > > Hello, > > > > > > I'm facing a similar issue not sure if it is related to this. > > > > > > I created an eclipse/maven project which just contains a pipeline > > > that includes many cTAKES components for which I included the Maven > > > dependencies. Everything worked out fine until I included the Drug > > > NER. I got the following error. > > > > > > An import could not be resolved. No .xml file with name > > > "org.apache.ctakes.drugner.types.Typesystem" was found in the class > > > path or data path. (Descriptor: > > > file:/C:/cTAKES_Workspace2/ctakes/ctakes-drug- > > > ner/desc/analysis_engine/DrugCNP2LookupWindow.xml) > > > > > > I tried to add the ctakes-drug-ner-res and it did not resolve the > issue. > > I > > > could workaround this by copying the contents of > > ctakes-drug-ner-resources > > > project but hate doing so. Maybe this is a maven newbie issue. > > > > > > Any thoughts? > > > > > > Thanks > > > Kannan > > > > > > > > > On Tue, Apr 23, 2013 at 10:35 AM, Tim Miller < > > > [email protected]> wrote: > > > > > > > It may actually be a maven issue: > > > > https://bugs.eclipse.org/bugs/**show_bug.cgi?id=284928<https://bug > > > > s.ec lipse.org/bugs/show_bug.cgi?id=284928> > > > > > > > > I'm a little swamped right now, but I'd like to try setting up a > > > > non-maven project with two source folders: > > > > src/main/java > > > > src/main/resources > > > > > > > > like ours, and see if this issue persists. > > > > Tim > > > > > > > > > > > > On 04/23/2013 11:21 AM, Masanz, James J. wrote: > > > > > > > >> I'm having the same issue. > > > >> I tried just creating a jar instead of a runnable jar and get the > > same. > > > >> > > > >> Tim, I don't know if it's 1, 2 or 3. > > > >> > > > >> -- James > > > >> > > > >> > > > >> > > > >> -----Original Message----- > > > >>> From: dev-return-1533- > > > Masanz.James=m**[email protected]<[email protected] > > >[mail > > > to: > > > >>> dev- > > > >>> return-1533-Masanz.James=mayo.**[email protected]<mayo.edu@c > > > >>> take > > > >>> s.apache.org>] > > > >>> On Behalf Of Miller, > > > >>> Timothy > > > >>> Sent: Sunday, April 21, 2013 7:23 AM > > > >>> To: [email protected] > > > >>> Subject: export runnable jar issue > > > >>> > > > >>> I've found it useful to "export runnable jar" to create a single > > > >>> file that can be run with 'java -jar' on a server/cluster for a > > > >>> given run configuration. There is an issue that may be an > > > >>> eclipse bug but also may be a ctakes issue. > > > >>> > > > >>> The issue is that files under src/main/java source folders > > > >>> export exactly as expected, while files under src/main/resources > > > >>> folders export with the "resources" folder prepended. So you > > > >>> will get the following classpaths in the jar: > > > >>> > > > >>> org/apache/ctakes/someproject/**SomeCode.class > > > >>> resources/org/apache/ctakes/**someproject/some_model.bin > > > >>> > > > >>> This obviously screws up important classpaths at runtime. I can > > > >>> workaround it, but does anyone have a sense of whether this > > > >>> issue > > > >>> is: > > > >>> 1) Clearly an eclipse issue with nothing we can do except try to > > > >>> notify someone > > > >>> 2) An eclipse issue but there is something we're doing wrong > > > >>> (like a convention for resources we're not following that would > > > >>> fix this) > > > >>> 3) Clearly a ctakes issue > > > >>> > > > >>> Tim > > > >>> > > > >> > > > > > > > > > > > > > -- > > > Best Regards > > > Kannan Thiagarajan > > > > > > -- > Best Regards > Kannan Thiagarajan
