As a first pass, can we update the dependency to ClearTK 1.4.0 without 
retraining the models --  would retraining be necessary even if we didn't 
switch to LIBLINEAR.

Just wonder if we have an option for staging this, in case we can't tackle it 
all now.

-----Original Message-----
From: [email protected] 
[mailto:[email protected]] On Behalf Of 
Steven Bethard
Sent: Thursday, May 30, 2013 5:45 PM
To: [email protected]
Subject: upgrade ClearTK dependency to 1.4.0?

I just released ClearTK 1.4.0 and there are a couple of reasons we should 
probably consider updating the cTAKES dependency:

(1) ClearTK 1.4.0 can now load trained models from the classpath, so we could 
get rid of the workaround 
org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator.allowClassifierModelOnClasspath.

(2) ClearTK 1.4.0 has wrappers for multi-class classification with LIBLINEAR 
which is orders of magnitude faster than LIBSVM.

The main downside is that models will have to be re-trained. (It's not 
necessarily the case that all models would need to be retrained, depending on 
exactly which classes they were using, but it's probably safer to do so.)

I believe this would mostly affect ctakes-temporal, ctakes-relation-extractor 
and ctakes-assertion.

Thoughts?

Steve

P.S. I noticed that ctakes-assertion declares a dependency on cleartk-examples. 
The cleartk-examples module was never intended for release, and has not been 
released as part of ClearTK 1.4.0. Looking at the code, it seems like the 
dependency in cleartk-examples is not needed, but perhaps a ctakes-assertion 
person could weigh in on why this dependency was there?

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