James, +1 [x] +1 Release the packages as Apache cTAKES 3.1.0 Below is what I verified so far (plan to go through the documentation in parallel):
Tested: 1- Downloaded src and bin tz 2- Verified Signatures 3- Unpacked and able to compile from source (mvn compile automatically downloads umls resources) 3a - Able to run AggregatePlainTextProcessor using CVD from $mvn -PrunCVD 3b - Able to run a test note using AggregatePlainTextUMLSProcessor 4- Unpacked bin 4a - Download and merge resources folder from http://sourceforge.net/projects/ctakesresources/files/ctakes-resources-3.1.0.zip/download 4b - Added umls credentials to java args 4c - Able to run a sample note usning AggregatePlainTextUMLSProcessor Notes: 1- User will get a misleading SQLException due to I/O umls file not found if they do not download the umls resources. I don't think it's a show stopper. 2- For consistency, we should copy over the NOTICE/LICENSE for the new template-filler module. I don't think it's a show stopper, everything there is included in the root NOTICE/LICENSE already. 3- runctakesCVD.sh warning about log4j.xml not found. Should we just remove it from the sh if it's not there? 4- got a GC OOM heap exceed error with the sample- let's increase the mem requirements to 2g in the next release due to more models loaded in the newer modules? $ gpg --verify apache-ctakes-3.1.0-bin.tar.gz.asc gpg: Signature made Fri Aug 30 10:18:26 2013 EDT using RSA key ID FD239395 gpg: Good signature from "James Joseph Masanz (CODE SIGNING KEY) < james-mas...@apache.org>" gpg: WARNING: This key is not certified with a trusted signature! gpg: There is no indication that the signature belongs to the owner. Primary key fingerprint: 69D7 C55D 47CA 08ED E3D0 529C D27D BF3C FD23 9395 gpg --verify apache-ctakes-3.1.0-src.tar.gz.asc gpg: Signature made Fri Aug 30 10:18:39 2013 EDT using RSA key ID FD239395 gpg: Good signature from "James Joseph Masanz (CODE SIGNING KEY) < james-mas...@apache.org>" gpg: WARNING: This key is not certified with a trusted signature! gpg: There is no indication that the signature belongs to the owner. Primary key fingerprint: 69D7 C55D 47CA 08ED E3D0 529C D27D BF3C FD23 9395 On Sat, Aug 31, 2013 at 12:36 AM, Masanz, James J. <masanz.ja...@mayo.edu>wrote: > > Hello all, > > This is a call for a vote on releasing the following candidate as Apache > cTAKES 3.1.0. This will be our first release as a TLP. > > For more detailed information on the changes/release notes, please visit: > > https://issues.apache.org/jira/secure/ReleaseNote.jspa?version=12323276&projectId=12313621 > > The release was made using the cTAKES release process documented here: > http://ctakes.apache.org/ctakes-release-guide.html > > The candidate is available at: > > http://people.apache.org/~james-masanz/RCs/ctakes-3.1.0/rc3/apache-ctakes-3.1.0-src.tar.gz/.zip > > The tag to be voted on: > http://svn.apache.org/repos/asf/ctakes/tags/ctakes-3.1.0-rc3/ > > The MD5 checksum of the tarball can be found at: > > http://people.apache.org/~james-masanz/RCs/ctakes-3.1.0/rc3/apache-ctakes-3.1.0-src.tar.gz.md5/ > .zip.md5 > > The signature of the tarball can be found at: > > http://people.apache.org/~james-masanz/RCs/ctakes-3.1.0/rc3/apache-ctakes-3.1.0-src.tar.gz.asc/.zip.asc > > Apache cTAKES' KEYS file, containing the PGP keys used to sign the release: > http://svn.apache.org/repos/asf/ctakes/tags/ctakes-3.1.0-rc3/KEYS > > Please vote on releasing these packages as Apache cTAKES 3.1.0. The vote > is open for at least the next 72 hours. > > Only votes from the cTAKES PMC are binding, but folks are welcome to check > the release candidate and voice their approval or disapproval. The vote > passes if at least three binding +1 votes are cast. > [ ] +1 Release the packages as Apache cTAKES 3.1.0 > [ ] -1 Do not release the packages because... > > Also, the convenience binary is: > > http://people.apache.org/~james-masanz/RCs/ctakes-3.1.0/rc3/apache-ctakes-3.1.0-bin.tar.gz/.zip > > The nexus staging repository: > https://repository.apache.org/content/repositories/orgapachectakes-125/ > > Thanks! > James Masanz > > > Sent: Friday, August 30, 2013 11:23 PM > To: James Joseph Masanz > Subject: Nexus: Staging Completed. > > > Description: > > apache ctakes-3.1.0-rc3 > > Details: > > The following artifacts have been staged to the org.apache.ctakes-125 > (u:james-masanz, a:71.82.125.95) repository. > > archetype-catalog.xml > ctakes-coreference-3.1.0.jar > ctakes-coreference-3.1.0-javadoc.jar.asc > ctakes-coreference-3.1.0.pom.asc > ctakes-coreference-3.1.0.jar.asc > ctakes-coreference-3.1.0-javadoc.jar > ctakes-coreference-3.1.0-sources.jar > ctakes-coreference-3.1.0-sources.jar.asc > ctakes-coreference-3.1.0.pom > ctakes-ne-contexts-res-3.1.0.pom.asc > ctakes-ne-contexts-res-3.1.0-sources.jar.asc > ctakes-ne-contexts-res-3.1.0.pom > ctakes-ne-contexts-res-3.1.0.jar.asc > ctakes-ne-contexts-res-3.1.0.jar > ctakes-ne-contexts-res-3.1.0-sources.jar > ctakes-constituency-parser-3.1.0-javadoc.jar > ctakes-constituency-parser-3.1.0-sources.jar.asc > ctakes-constituency-parser-3.1.0-sources.jar > ctakes-constituency-parser-3.1.0.pom.asc > ctakes-constituency-parser-3.1.0.pom > ctakes-constituency-parser-3.1.0-javadoc.jar.asc > ctakes-constituency-parser-3.1.0.jar.asc > ctakes-constituency-parser-3.1.0.jar > ctakes-context-tokenizer-3.1.0-sources.jar > ctakes-context-tokenizer-3.1.0.jar > ctakes-context-tokenizer-3.1.0-javadoc.jar.asc > ctakes-context-tokenizer-3.1.0.jar.asc > ctakes-context-tokenizer-3.1.0-sources.jar.asc > ctakes-context-tokenizer-3.1.0.pom.asc > ctakes-context-tokenizer-3.1.0.pom > ctakes-context-tokenizer-3.1.0-javadoc.jar > ctakes-assertion-zoner-res-3.1.0-sources.jar.asc > ctakes-assertion-zoner-res-3.1.0.jar.asc > ctakes-assertion-zoner-res-3.1.0-sources.jar > ctakes-assertion-zoner-res-3.1.0.pom > ctakes-assertion-zoner-res-3.1.0.pom.asc > ctakes-assertion-zoner-res-3.1.0.jar > ctakes-clinical-pipeline-3.1.0-javadoc.jar.asc > ctakes-clinical-pipeline-3.1.0.pom > ctakes-clinical-pipeline-3.1.0-sources.jar > ctakes-clinical-pipeline-3.1.0-sources.jar.asc > ctakes-clinical-pipeline-3.1.0.jar.asc > ctakes-clinical-pipeline-3.1.0-javadoc.jar > ctakes-clinical-pipeline-3.1.0.pom.asc > ctakes-clinical-pipeline-3.1.0.jar > ctakes-3.1.0.pom.asc > ctakes-3.1.0-source-release.zip.asc > ctakes-3.1.0-source-release.zip > ctakes-3.1.0.pom > ctakes-pad-term-spotter-res-3.1.0-sources.jar > ctakes-pad-term-spotter-res-3.1.0-sources.jar.asc > ctakes-pad-term-spotter-res-3.1.0.jar.asc > ctakes-pad-term-spotter-res-3.1.0.pom > ctakes-pad-term-spotter-res-3.1.0.jar > ctakes-pad-term-spotter-res-3.1.0.pom.asc > ctakes-relation-extractor-res-3.1.0-sources.jar > ctakes-relation-extractor-res-3.1.0.jar.asc > ctakes-relation-extractor-res-3.1.0.pom.asc > ctakes-relation-extractor-res-3.1.0-sources.jar.asc > ctakes-relation-extractor-res-3.1.0.jar > ctakes-relation-extractor-res-3.1.0.pom > ctakes-assertion-3.1.0-sources.jar.asc > ctakes-assertion-3.1.0.pom.asc > ctakes-assertion-3.1.0.jar.asc > ctakes-assertion-3.1.0-javadoc.jar.asc > ctakes-assertion-3.1.0.jar > ctakes-assertion-3.1.0.pom > ctakes-assertion-3.1.0-sources.jar > ctakes-assertion-3.1.0-javadoc.jar > ctakes-constituency-parser-res-3.1.0.jar > ctakes-constituency-parser-res-3.1.0.pom > ctakes-constituency-parser-res-3.1.0.pom.asc > ctakes-constituency-parser-res-3.1.0.jar.asc > ctakes-constituency-parser-res-3.1.0-sources.jar.asc > ctakes-constituency-parser-res-3.1.0-sources.jar > ctakes-coreference-res-3.1.0-sources.jar.asc > ctakes-coreference-res-3.1.0-sources.jar > ctakes-coreference-res-3.1.0.pom.asc > ctakes-coreference-res-3.1.0.jar > ctakes-coreference-res-3.1.0.pom > ctakes-coreference-res-3.1.0.jar.asc > ctakes-pos-tagger-3.1.0.pom.asc > ctakes-pos-tagger-3.1.0-sources.jar.asc > ctakes-pos-tagger-3.1.0.jar.asc > ctakes-pos-tagger-3.1.0.jar > ctakes-pos-tagger-3.1.0-javadoc.jar.asc > ctakes-pos-tagger-3.1.0-javadoc.jar > ctakes-pos-tagger-3.1.0.pom > ctakes-pos-tagger-3.1.0-sources.jar > ctakes-side-effect-3.1.0-javadoc.jar > ctakes-side-effect-3.1.0-javadoc.jar.asc > ctakes-side-effect-3.1.0-sources.jar > ctakes-side-effect-3.1.0.jar > ctakes-side-effect-3.1.0.jar.asc > ctakes-side-effect-3.1.0.pom.asc > ctakes-side-effect-3.1.0.pom > ctakes-side-effect-3.1.0-sources.jar.asc > ctakes-ne-contexts-3.1.0-javadoc.jar > ctakes-ne-contexts-3.1.0-javadoc.jar.asc > ctakes-ne-contexts-3.1.0.jar.asc > ctakes-ne-contexts-3.1.0.jar > ctakes-ne-contexts-3.1.0-sources.jar.asc > ctakes-ne-contexts-3.1.0-sources.jar > ctakes-ne-contexts-3.1.0.pom.asc > ctakes-ne-contexts-3.1.0.pom > ctakes-utils-3.1.0.jar.asc > ctakes-utils-3.1.0-sources.jar.asc > ctakes-utils-3.1.0.pom.asc > ctakes-utils-3.1.0-sources.jar > ctakes-utils-3.1.0.pom > ctakes-utils-3.1.0-javadoc.jar > ctakes-utils-3.1.0.jar > ctakes-utils-3.1.0-javadoc.jar.asc > ctakes-chunker-res-3.1.0-sources.jar > ctakes-chunker-res-3.1.0.jar > ctakes-chunker-res-3.1.0-sources.jar.asc > ctakes-chunker-res-3.1.0.pom > ctakes-chunker-res-3.1.0.pom.asc > ctakes-chunker-res-3.1.0.jar.asc > ctakes-lvg-3.1.0-javadoc.jar > ctakes-lvg-3.1.0-javadoc.jar.asc > ctakes-lvg-3.1.0.jar.asc > ctakes-lvg-3.1.0.pom > ctakes-lvg-3.1.0-sources.jar.asc > ctakes-lvg-3.1.0-sources.jar > ctakes-lvg-3.1.0.pom.asc > ctakes-lvg-3.1.0.jar > ctakes-dictionary-lookup-3.1.0-javadoc.jar > ctakes-dictionary-lookup-3.1.0.jar.asc > ctakes-dictionary-lookup-3.1.0.jar > ctakes-dictionary-lookup-3.1.0.pom.asc > ctakes-dictionary-lookup-3.1.0-sources.jar.asc > ctakes-dictionary-lookup-3.1.0-javadoc.jar.asc > ctakes-dictionary-lookup-3.1.0.pom > ctakes-dictionary-lookup-3.1.0-sources.jar > ctakes-drug-ner-res-3.1.0.pom.asc > ctakes-drug-ner-res-3.1.0-sources.jar > ctakes-drug-ner-res-3.1.0.pom > ctakes-drug-ner-res-3.1.0-sources.jar.asc > ctakes-drug-ner-res-3.1.0.jar > ctakes-drug-ner-res-3.1.0.jar.asc > ctakes-assertion-zoner-3.1.0-sources.jar.asc > ctakes-assertion-zoner-3.1.0-sources.jar > ctakes-assertion-zoner-3.1.0.pom > ctakes-assertion-zoner-3.1.0-javadoc.jar > ctakes-assertion-zoner-3.1.0-javadoc.jar.asc > ctakes-assertion-zoner-3.1.0.jar.asc > ctakes-assertion-zoner-3.1.0.jar > ctakes-assertion-zoner-3.1.0.pom.asc > ctakes-smoking-status-res-3.1.0.pom > ctakes-smoking-status-res-3.1.0.pom.asc > ctakes-smoking-status-res-3.1.0.jar > ctakes-smoking-status-res-3.1.0.jar.asc > ctakes-smoking-status-res-3.1.0-sources.jar > ctakes-smoking-status-res-3.1.0-sources.jar.asc > ctakes-dependency-parser-res-3.1.0.pom > ctakes-dependency-parser-res-3.1.0-sources.jar.asc > ctakes-dependency-parser-res-3.1.0-sources.jar > ctakes-dependency-parser-res-3.1.0.pom.asc > ctakes-dependency-parser-res-3.1.0.jar > ctakes-dependency-parser-res-3.1.0.jar.asc > ctakes-template-filler-3.1.0-javadoc.jar > ctakes-template-filler-3.1.0-sources.jar > ctakes-template-filler-3.1.0-sources.jar.asc > ctakes-template-filler-3.1.0.jar > ctakes-template-filler-3.1.0.pom.asc > ctakes-template-filler-3.1.0-javadoc.jar.asc > ctakes-template-filler-3.1.0.jar.asc > ctakes-template-filler-3.1.0.pom > ctakes-pad-term-spotter-3.1.0-sources.jar > ctakes-pad-term-spotter-3.1.0-sources.jar.asc > ctakes-pad-term-spotter-3.1.0.jar.asc > ctakes-pad-term-spotter-3.1.0-javadoc.jar > ctakes-pad-term-spotter-3.1.0-javadoc.jar.asc > ctakes-pad-term-spotter-3.1.0.jar > ctakes-pad-term-spotter-3.1.0.pom.asc > ctakes-pad-term-spotter-3.1.0.pom > ctakes-type-system-3.1.0.pom > ctakes-type-system-3.1.0.jar.asc > ctakes-type-system-3.1.0.jar > ctakes-type-system-3.1.0-javadoc.jar.asc > ctakes-type-system-3.1.0-sources.jar.asc > ctakes-type-system-3.1.0.pom.asc > ctakes-type-system-3.1.0-sources.jar > ctakes-type-system-3.1.0-javadoc.jar > ctakes-core-3.1.0-javadoc.jar > ctakes-core-3.1.0-sources.jar.asc > ctakes-core-3.1.0.jar > ctakes-core-3.1.0-sources.jar > ctakes-core-3.1.0-javadoc.jar.asc > ctakes-core-3.1.0.pom.asc > ctakes-core-3.1.0.jar.asc > ctakes-core-3.1.0.pom > ctakes-core-res-3.1.0.pom > ctakes-core-res-3.1.0.pom.asc > ctakes-core-res-3.1.0-sources.jar.asc > ctakes-core-res-3.1.0.jar > ctakes-core-res-3.1.0-sources.jar > ctakes-core-res-3.1.0.jar.asc > ctakes-regression-test-3.1.0.pom.asc > ctakes-regression-test-3.1.0-sources.jar > ctakes-regression-test-3.1.0.pom > ctakes-regression-test-3.1.0-sources.jar.asc > ctakes-regression-test-3.1.0.jar > ctakes-regression-test-3.1.0.jar.asc > ctakes-dictionary-lookup-res-3.1.0.jar > ctakes-dictionary-lookup-res-3.1.0-sources.jar.asc > ctakes-dictionary-lookup-res-3.1.0.jar.asc > ctakes-dictionary-lookup-res-3.1.0-sources.jar > ctakes-dictionary-lookup-res-3.1.0.pom > ctakes-dictionary-lookup-res-3.1.0.pom.asc > ctakes-relation-extractor-3.1.0-sources.jar > ctakes-relation-extractor-3.1.0-javadoc.jar.asc > ctakes-relation-extractor-3.1.0-javadoc.jar > ctakes-relation-extractor-3.1.0.pom.asc > ctakes-relation-extractor-3.1.0.pom > ctakes-relation-extractor-3.1.0.jar > ctakes-relation-extractor-3.1.0.jar.asc > ctakes-relation-extractor-3.1.0-sources.jar.asc > ctakes-lvg-res-3.1.0-sources.jar > ctakes-lvg-res-3.1.0.jar > ctakes-lvg-res-3.1.0-sources.jar.asc > ctakes-lvg-res-3.1.0.pom > ctakes-lvg-res-3.1.0.jar.asc > ctakes-lvg-res-3.1.0.pom.asc > ctakes-pos-tagger-res-3.1.0.pom.asc > ctakes-pos-tagger-res-3.1.0.jar.asc > ctakes-pos-tagger-res-3.1.0-sources.jar.asc > ctakes-pos-tagger-res-3.1.0.pom > ctakes-pos-tagger-res-3.1.0.jar > ctakes-pos-tagger-res-3.1.0-sources.jar > ctakes-preprocessor-3.1.0-sources.jar.asc > ctakes-preprocessor-3.1.0-javadoc.jar.asc > ctakes-preprocessor-3.1.0-sources.jar > ctakes-preprocessor-3.1.0.jar > ctakes-preprocessor-3.1.0.pom > ctakes-preprocessor-3.1.0.pom.asc > ctakes-preprocessor-3.1.0.jar.asc > ctakes-preprocessor-3.1.0-javadoc.jar > ctakes-chunker-3.1.0-sources.jar > ctakes-chunker-3.1.0.pom.asc > ctakes-chunker-3.1.0.jar > ctakes-chunker-3.1.0-javadoc.jar > ctakes-chunker-3.1.0-sources.jar.asc > ctakes-chunker-3.1.0.jar.asc > ctakes-chunker-3.1.0.pom > ctakes-chunker-3.1.0-javadoc.jar.asc > ctakes-smoking-status-3.1.0-javadoc.jar > ctakes-smoking-status-3.1.0.pom.asc > ctakes-smoking-status-3.1.0.pom > ctakes-smoking-status-3.1.0-sources.jar.asc > ctakes-smoking-status-3.1.0-javadoc.jar.asc > ctakes-smoking-status-3.1.0-sources.jar > ctakes-smoking-status-3.1.0.jar.asc > ctakes-smoking-status-3.1.0.jar > ctakes-side-effect-res-3.1.0.jar.asc > ctakes-side-effect-res-3.1.0.pom > ctakes-side-effect-res-3.1.0-sources.jar > ctakes-side-effect-res-3.1.0.pom.asc > ctakes-side-effect-res-3.1.0-sources.jar.asc > ctakes-side-effect-res-3.1.0.jar > ctakes-drug-ner-3.1.0-javadoc.jar > ctakes-drug-ner-3.1.0.pom.asc > ctakes-drug-ner-3.1.0.pom > ctakes-drug-ner-3.1.0.jar > ctakes-drug-ner-3.1.0.jar.asc > ctakes-drug-ner-3.1.0-sources.jar > ctakes-drug-ner-3.1.0-sources.jar.asc > ctakes-drug-ner-3.1.0-javadoc.jar.asc > ctakes-assertion-res-3.1.0.jar.asc > ctakes-assertion-res-3.1.0-sources.jar > ctakes-assertion-res-3.1.0-sources.jar.asc > ctakes-assertion-res-3.1.0.jar > ctakes-assertion-res-3.1.0.pom.asc > ctakes-assertion-res-3.1.0.pom > ctakes-dependency-parser-3.1.0.jar > ctakes-dependency-parser-3.1.0-javadoc.jar > ctakes-dependency-parser-3.1.0.pom > ctakes-dependency-parser-3.1.0-javadoc.jar.asc > ctakes-dependency-parser-3.1.0.pom.asc > ctakes-dependency-parser-3.1.0-sources.jar.asc > ctakes-dependency-parser-3.1.0.jar.asc > ctakes-dependency-parser-3.1.0-sources.jar
