The attachment didn't come through so if the other email I sent didn't help, please post the xmi somewhere that I can download it from. Thanks.
-----Original Message----- From: Nick Nikandish [mailto:snika...@emerginghealthit.com] Sent: Tuesday, July 08, 2014 2:14 PM To: dev@ctakes.apache.org Subject: RE: Retrieving CUIs The xmi file is attached. -----Original Message----- From: Masanz, James J. [mailto:masanz.ja...@mayo.edu] Sent: Tuesday, July 08, 2014 2:54 PM To: 'dev@ctakes.apache.org' Subject: RE: Retrieving CUIs What gets annotated depends on which pipeline you use. The pipeline mentioned in the User Guide should also annotate diseases/disorders, signs/symptoms, procedures, and anatomical sites. So first would be to check which pipeline you are using. Or perhaps you do not have the separately downloadable dictionary. To test that, try text that includes the words "knee" and "pain". If those are annotated and other anatomical sites and signs/symptoms are not, you probably don't have the dictionary resources or don't have them on your classpath. Good things to post to help us help you are: - whether you are using CVD or CPE GUI, or a program/script - the name of pipeline you are running (are you loading an XML descriptor into CVD or CPE), or the name of the script/program - a sample output file (xcas/xmi) [make sure not to include any PHI in the sample text that you process if you are going to post the output] -- James -----Original Message----- From: Nick Nikandish [mailto:snika...@emerginghealthit.com] Sent: Tuesday, July 08, 2014 1:43 PM To: dev@ctakes.apache.org Subject: Retrieving CUIs Hi there, I was wondering if there is any way to retrieve CUIs for the tokens of a free text in CTakes without changing the codebase? I am able to retrieve CUIs for only medications in a text. Thanks, Nick
