Thank you, Vijay. However, I am still encountering with the crash. Best, Oranit.
-----Original Message----- From: vijay garla [mailto:[email protected]] Sent: Monday, July 13, 2015 5:53 PM To: [email protected] Subject: Re: The SegmentRegexAnnotator of Ytex see https://cwiki.apache.org/confluence/display/CTAKES/User%27s+Guide best, vj On Mon, Jul 13, 2015 at 2:50 AM, Oranit Dror <[email protected]> wrote: > Hello, > > I am using ctakes 3.2.2. and recently I have tried to apply the YTEX > pipeline. Particularly, I am interested in the SegmentRegexAnnotator of > Ytex. > > My questions are: > > 1. When running the pipeline, an > org.apache.uima.resource.ResourceInitializationException is thrown, > probably due to a failure in the initialization of > org.apache.ctakes.ytex.uima.annotators.SegmentRegexAnnotator. Below is the > stack trace. > > 2. Where can I find information on how the SegmentRegexAnnotator > works, especially where the list of segments is defined. > > Thank you, > Oranit. > > > The stack trace for the Ytex pipeline crash: > > 12 יול 2015 09:47:52 ERROR RunEngine - Failed to create AE from xml > descriptor > :E:/Data/Views/oranit_nlp/subprod1/nlp/java/algotec-nlp/desc/desc/algotec-nlp/desc/analysis_engine/AggregateDiseaseYtexUMLSProcessorDescriptor.xml > org.apache.uima.resource.ResourceInitializationException: Initialization > of annotator class > "org.apache.ctakes.ytex.uima.annotators.SegmentRegexAnnotator" failed. > (Descriptor: file:/E:/Program > Files/apache-ctakes-3.2.2-rc2/desc/ctakes-ytex-uima/desc/analysis_engine/SegmentRegexAnnotator.xml) > at > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252) > at > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156) > at > org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94) > at > org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62) > at > org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269) > at > org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387) > at > org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254) > at > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431) > at > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375) > at > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185) > at > org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94) > at > org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62) > at > org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269) > at > org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387) > at > org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254) > at > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431) > at > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375) > at > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185) > at > org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94) > at > org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62) > at > org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269) > at > org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:354) > at com.algotec.nlp.RunEngine.createCasObjects(RunEngine.java:1399) > at com.algotec.nlp.RunEngine.ensureCasObjects(RunEngine.java:1373) > at com.algotec.nlp.RunEngine.analyze(RunEngine.java:954) > at > com.algotec.nlp.servlet.ReportNLPServlet.doPost(ReportNLPServlet.java:128) > at > com.algotec.nlp.servlet.ReportNLPServlet.doPost(ReportNLPServlet.java:103) > at javax.servlet.http.HttpServlet.service(HttpServlet.java:647) > at javax.servlet.http.HttpServlet.service(HttpServlet.java:728) > at > org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:305) > at > org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210) > at > org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:51) > at > org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243) > at > org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210) > at > org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:222) > at > org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:123) > at > org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:502) > at > org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:171) > at > org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:100) > at > org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:953) > at > org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:118) > at > org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:408) > at > org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1041) > at > org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:603) > at > org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:310) > at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source) > at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown > Source) > at java.lang.Thread.run(Unknown Source) > Caused by: org.springframework.beans.factory.access.BootstrapException: > Unable to initialize group definition. Group resource name > [classpath*:org/apache/ctakes/ytex/uima/beanRefContext.xml], factory key > [ytexApplicationContext]; nested exception is > org.springframework.beans.factory.BeanCreationException: Error creating > bean with name 'ytexApplicationContext' defined in URL > [jar:file:/E:/Data/Views/oranit_nlp/subprod1/nlp/java/.metadata/.plugins/org.eclipse.wst.server.core/tmp0/wtpwebapps/nlp/WEB-INF/lib/ctakes-ytex-web-3.2.2-classes.jar!/org/apache/ctakes/ytex/uima/beanRefContext.xml]: > Instantiation of bean failed; nested exception is > org.springframework.beans.BeanInstantiationException: Could not instantiate > bean class > [org.springframework.context.support.ClassPathXmlApplicationContext]: > Constructor threw exception; nested exception is > org.springframework.beans.factory.BeanCreationException: Error creating > bean with name 'txAdvice' defined in class path resource > [org/apache/ctakes/ytex/beans-datasource.xml]: Cannot resolve reference to > bean 'transactionManager' while setting bean property 'transactionManager'; > nested exception is > org.springframework.beans.factory.BeanCreationException: Error creating > bean with name 'transactionManager' defined in class path resource > [org/apache/ctakes/ytex/beans-datasource.xml]: Instantiation of bean > failed; nested exception is java.lang.NoClassDefFoundError: > org/hibernate/HibernateException > at > org.springframework.beans.factory.access.SingletonBeanFactoryLocator.useBeanFactory(SingletonBeanFactoryLocator.java:386) > at > org.apache.ctakes.ytex.uima.ApplicationContextHolder.getApplicationContext(ApplicationContextHolder.java:79) > at > org.apache.ctakes.ytex.uima.annotators.SegmentRegexAnnotator.initialize(SegmentRegexAnnotator.java:65) > at > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250) > ... 47 more > Caused by: org.springframework.beans.factory.BeanCreationException: Error > creating bean with name 'ytexApplicationContext' defined in URL > [jar:file:/E:/Data/Views/oranit_nlp/subprod1/nlp/java/.metadata/.plugins/org.eclipse.wst.server.core/tmp0/wtpwebapps/nlp/WEB-INF/lib/ctakes-ytex-web-3.2.2-classes.jar!/org/apache/ctakes/ytex/uima/beanRefContext.xml]: > Instantiation of bean failed; nested exception is > org.springframework.beans.BeanInstantiationException: Could not instantiate > bean class > [org.springframework.context.support.ClassPathXmlApplicationContext]: > Constructor threw exception; nested exception is > org.springframework.beans.factory.BeanCreationException: Error creating > bean with name 'txAdvice' defined in class path resource > [org/apache/ctakes/ytex/beans-datasource.xml]: Cannot resolve reference to > bean 'transactionManager' while setting bean property 'transactionManager'; > nested exception is > org.springframework.beans.factory.BeanCreationException: Error creating > bean with name 'transactionManager' defined in class path resource > [org/apache/ctakes/ytex/beans-datasource.xml]: Instantiation of bean > failed; nested exception is java.lang.NoClassDefFoundError: > org/hibernate/HibernateException > at > org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:288) > at > org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:1035) > at > org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:939) > at > org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:485) > at > org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:456) > at > org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:294) > at > org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:225) > at > org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:291) > at > org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:193) > at > org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:609) > at > org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:918) > at > org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:469) > at > org.springframework.context.access.ContextSingletonBeanFactoryLocator.initializeDefinition(ContextSingletonBeanFactoryLocator.java:143) > at > org.springframework.beans.factory.access.SingletonBeanFactoryLocator.useBeanFactory(SingletonBeanFactoryLocator.java:381) > ... 50 more > Caused by: org.springframework.beans.BeanInstantiationException: Could not > instantiate bean class > [org.springframework.context.support.ClassPathXmlApplicationContext]: > Constructor threw exception; nested exception is > org.springframework.beans.factory.BeanCreationException: Error creating > bean with name 'txAdvice' defined in class path resource > [org/apache/ctakes/ytex/beans-datasource.xml]: Cannot resolve reference to > bean 'transactionManager' while setting bean property 'transactionManager'; > nested exception is > org.springframework.beans.factory.BeanCreationException: Error creating > bean with name 'transactionManager' defined in class path resource > [org/apache/ctakes/ytex/beans-datasource.xml]: Instantiation of bean > failed; nested exception is java.lang.NoClassDefFoundError: > org/hibernate/HibernateException > at > org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:162) > at > org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:110) > at > org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:280) > ... 63 more > Caused by: org.springframework.beans.factory.BeanCreationException: Error > creating bean with name 'txAdvice' defined in class path resource > [org/apache/ctakes/ytex/beans-datasource.xml]: Cannot resolve reference to > bean 'transactionManager' while setting bean property 'transactionManager'; > nested exception is > org.springframework.beans.factory.BeanCreationException: Error creating > bean with name 'transactionManager' defined in class path resource > [org/apache/ctakes/ytex/beans-datasource.xml]: Instantiation of bean > failed; nested exception is java.lang.NoClassDefFoundError: > org/hibernate/HibernateException > at > org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:328) > at > org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:106) > at > org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyPropertyValues(AbstractAutowireCapableBeanFactory.java:1360) > at > org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1118) > at > org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:517) > at > org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:456) > at > org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:294) > at > org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:225) > at > org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:291) > at > org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:193) > at > org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:609) > at > org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:918) > at > org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:469) > at > org.springframework.context.support.ClassPathXmlApplicationContext.<init>(ClassPathXmlApplicationContext.java:139) > at > org.springframework.context.support.ClassPathXmlApplicationContext.<init>(ClassPathXmlApplicationContext.java:93) > at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native > Method) > at sun.reflect.NativeConstructorAccessorImpl.newInstance(Unknown > Source) > at > sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source) > at java.lang.reflect.Constructor.newInstance(Unknown Source) > at > org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:147) > ... 65 more > Caused by: org.springframework.beans.factory.BeanCreationException: Error > creating bean with name 'transactionManager' defined in class path resource > [org/apache/ctakes/ytex/beans-datasource.xml]: Instantiation of bean > failed; nested exception is java.lang.NoClassDefFoundError: > org/hibernate/HibernateException > at > org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.instantiateBean(AbstractAutowireCapableBeanFactory.java:997) > at > org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:943) > at > org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:485) > at > org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:456) > at > org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:294) > at > org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:225) > at > org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:291) > at > org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:193) > at > org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:322) > ... 84 more > Caused by: java.lang.NoClassDefFoundError: org/hibernate/HibernateException > at java.lang.Class.getDeclaredConstructors0(Native Method) > at java.lang.Class.privateGetDeclaredConstructors(Unknown Source) > at java.lang.Class.getConstructor0(Unknown Source) > at java.lang.Class.getDeclaredConstructor(Unknown Source) > at > org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:67) > at > org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.instantiateBean(AbstractAutowireCapableBeanFactory.java:990) > ... 92 more > Caused by: java.lang.ClassNotFoundException: > org.hibernate.HibernateException > at > org.apache.catalina.loader.WebappClassLoader.loadClass(WebappClassLoader.java:1702) > at > org.apache.catalina.loader.WebappClassLoader.loadClass(WebappClassLoader.java:1547) > ... 98 more > 9684 [http-bio-8080-exec-3] ERROR com.algotec.nlp.RunEngine - Failed to > create AE from xml descriptor > :E:/Data/Views/oranit_nlp/subprod1/nlp/java/algotec-nlp/desc/desc/algotec-nlp/desc/analysis_engine/AggregateDiseaseYtexUMLSProcessorDescriptor.xml > org.apache.uima.resource.ResourceInitializationException: Initialization > of annotator class > "org.apache.ctakes.ytex.uima.annotators.SegmentRegexAnnotator" failed. > (Descriptor: file:/E:/Program > Files/apache-ctakes-3.2.2-rc2/desc/ctakes-ytex-uima/desc/analysis_engine/SegmentRegexAnnotator.xml) > at > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252) > at > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156) > at > org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94) > at > org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62) > at > org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269) > at > org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387) > at > org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254) > at > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431) > at > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375) > at > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185) > at > org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94) > at > org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62) > at > org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269) > at > org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387) > at > org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254) > at > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431) > at > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375) > at > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185) > at > org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94) > at > org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62) > at > org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269) > at > org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:354) > at com.algotec.nlp.RunEngine.createCasObjects(RunEngine.java:1399) > at com.algotec.nlp.RunEngine.ensureCasObjects(RunEngine.java:1373) > at com.algotec.nlp.RunEngine.analyze(RunEngine.java:954) > at > com.algotec.nlp.servlet.ReportNLPServlet.doPost(ReportNLPServlet.java:128) > at > com.algotec.nlp.servlet.ReportNLPServlet.doPost(ReportNLPServlet.java:103) > at javax.servlet.http.HttpServlet.service(HttpServlet.java:647) > at javax.servlet.http.HttpServlet.service(HttpServlet.java:728) > at > org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:305) > at > org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210) > at > org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:51) > at > org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243) > at > org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210) > at > org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:222) > at > org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:123) > at > org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:502) > at > org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:171) > at > org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:100) > at > org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:953) > at > org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:118) > at > org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:408) > at > org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1041) > at > org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:603) > at > org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:310) > at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source) > at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown > Source) > at java.lang.Thread.run(Unknown Source) > Caused by: org.springframework.beans.factory.access.BootstrapException: > Unable to initialize group definition. Group resource name > [classpath*:org/apache/ctakes/ytex/uima/beanRefContext.xml], factory key > [ytexApplicationContext]; nested exception is > org.springframework.beans.factory.BeanCreationException: Error creating > bean with name 'ytexApplicationContext' defined in URL > [jar:file:/E:/Data/Views/oranit_nlp/subprod1/nlp/java/.metadata/.plugins/org.eclipse.wst.server.core/tmp0/wtpwebapps/nlp/WEB-INF/lib/ctakes-ytex-web-3.2.2-classes.jar!/org/apache/ctakes/ytex/uima/beanRefContext.xml]: > Instantiation of bean failed; nested exception is > org.springframework.beans.BeanInstantiationException: Could not instantiate > bean class > [org.springframework.context.support.ClassPathXmlApplicationContext]: > Constructor threw exception; nested exception is > org.springframework.beans.factory.BeanCreationException: Error creating > bean with name 'txAdvice' defined in class path resource > [org/apache/ctakes/ytex/beans-datasource.xml]: Cannot resolve reference to > bean 'transactionManager' while setting bean property 'transactionManager'; > nested exception is > org.springframework.beans.factory.BeanCreationException: Error creating > bean with name 'transactionManager' defined in class path resource > [org/apache/ctakes/ytex/beans-datasource.xml]: Instantiation of bean > failed; nested exception is java.lang.NoClassDefFoundError: > org/hibernate/HibernateException > at > org.springframework.beans.factory.access.SingletonBeanFactoryLocator.useBeanFactory(SingletonBeanFactoryLocator.java:386) > at > org.apache.ctakes.ytex.uima.ApplicationContextHolder.getApplicationContext(ApplicationContextHolder.java:79) > at > org.apache.ctakes.ytex.uima.annotators.SegmentRegexAnnotator.initialize(SegmentRegexAnnotator.java:65) > at > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250) > ... 47 more > Caused by: org.springframework.beans.factory.BeanCreationException: Error > creating bean with name 'ytexApplicationContext' defined in URL > [jar:file:/E:/Data/Views/oranit_nlp/subprod1/nlp/java/.metadata/.plugins/org.eclipse.wst.server.core/tmp0/wtpwebapps/nlp/WEB-INF/lib/ctakes-ytex-web-3.2.2-classes.jar!/org/apache/ctakes/ytex/uima/beanRefContext.xml]: > Instantiation of bean failed; nested exception is > org.springframework.beans.BeanInstantiationException: Could not instantiate > bean class > [org.springframework.context.support.ClassPathXmlApplicationContext]: > Constructor threw exception; nested exception is > org.springframework.beans.factory.BeanCreationException: Error creating > bean with name 'txAdvice' defined in class path resource > [org/apache/ctakes/ytex/beans-datasource.xml]: Cannot resolve reference to > bean 'transactionManager' while setting bean property 'transactionManager'; > nested exception is > org.springframework.beans.factory.BeanCreationException: Error creating > bean with name 'transactionManager' defined in class path resource > [org/apache/ctakes/ytex/beans-datasource.xml]: Instantiation of bean > failed; nested exception is java.lang.NoClassDefFoundError: > org/hibernate/HibernateException > at > org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:288) > at > org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:1035) > at > org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:939) > at > org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:485) > at > org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:456) > at > org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:294) > at > org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:225) > at > org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:291) > at > org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:193) > at > org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:609) > at > org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:918) > at > org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:469) > at > org.springframework.context.access.ContextSingletonBeanFactoryLocator.initializeDefinition(ContextSingletonBeanFactoryLocator.java:143) > at > org.springframework.beans.factory.access.SingletonBeanFactoryLocator.useBeanFactory(SingletonBeanFactoryLocator.java:381) > ... 50 more > Caused by: org.springframework.beans.BeanInstantiationException: Could not > instantiate bean class > [org.springframework.context.support.ClassPathXmlApplicationContext]: > Constructor threw exception; nested exception is > org.springframework.beans.factory.BeanCreationException: Error creating > bean with name 'txAdvice' defined in class path resource > [org/apache/ctakes/ytex/beans-datasource.xml]: Cannot resolve reference to > bean 'transactionManager' while setting bean property 'transactionManager'; > nested exception is > org.springframework.beans.factory.BeanCreationException: Error creating > bean with name 'transactionManager' defined in class path resource > [org/apache/ctakes/ytex/beans-datasource.xml]: Instantiation of bean > failed; nested exception is java.lang.NoClassDefFoundError: > org/hibernate/HibernateException > at > org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:162) > at > org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:110) > at > org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:280) > ... 63 more > Caused by: org.springframework.beans.factory.BeanCreationException: Error > creating bean with name 'txAdvice' defined in class path resource > [org/apache/ctakes/ytex/beans-datasource.xml]: Cannot resolve reference to > bean 'transactionManager' while setting bean property 'transactionManager'; > nested exception is > org.springframework.beans.factory.BeanCreationException: Error creating > bean with name 'transactionManager' defined in class path resource > [org/apache/ctakes/ytex/beans-datasource.xml]: Instantiation of bean > failed; nested exception is java.lang.NoClassDefFoundError: > org/hibernate/HibernateException > at > org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:328) > at > org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:106) > at > org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyPropertyValues(AbstractAutowireCapableBeanFactory.java:1360) > at > org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1118) > at > org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:517) > at > org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:456) > at > org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:294) > at > org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:225) > at > org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:291) > at > org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:193) > at > org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:609) > at > org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:918) > at > org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:469) > at > org.springframework.context.support.ClassPathXmlApplicationContext.<init>(ClassPathXmlApplicationContext.java:139) > at > org.springframework.context.support.ClassPathXmlApplicationContext.<init>(ClassPathXmlApplicationContext.java:93) > at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native > Method) > at sun.reflect.NativeConstructorAccessorImpl.newInstance(Unknown > Source) > at > sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source) > at java.lang.reflect.Constructor.newInstance(Unknown Source) > at > org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:147) > ... 65 more > Caused by: org.springframework.beans.factory.BeanCreationException: Error > creating bean with name 'transactionManager' defined in class path resource > [org/apache/ctakes/ytex/beans-datasource.xml]: Instantiation of bean > failed; nested exception is java.lang.NoClassDefFoundError: > org/hibernate/HibernateException > at > org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.instantiateBean(AbstractAutowireCapableBeanFactory.java:997) > at > org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:943) > at > org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:485) > at > org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:456) > at > org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:294) > at > org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:225) > at > org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:291) > at > org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:193) > at > org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:322) > ... 84 more > Caused by: java.lang.NoClassDefFoundError: org/hibernate/HibernateException > at java.lang.Class.getDeclaredConstructors0(Native Method) > at java.lang.Class.privateGetDeclaredConstructors(Unknown Source) > at java.lang.Class.getConstructor0(Unknown Source) > at java.lang.Class.getDeclaredConstructor(Unknown Source) > at > org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:67) > at > org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.instantiateBean(AbstractAutowireCapableBeanFactory.java:990) > ... 92 more > Caused by: java.lang.ClassNotFoundException: > org.hibernate.HibernateException > at > org.apache.catalina.loader.WebappClassLoader.loadClass(WebappClassLoader.java:1702) > at > org.apache.catalina.loader.WebappClassLoader.loadClass(WebappClassLoader.java:1547) > ... 98 more > 12 יול 2015 09:47:52 INFO RunEngine - Unknown error > 9690 [http-bio-8080-exec-3] INFO com.algotec.nlp.RunEngine - Unknown error > java.lang.RuntimeException: > org.apache.uima.resource.ResourceInitializationException: Initialization of > annotator class > "org.apache.ctakes.ytex.uima.annotators.SegmentRegexAnnotator" failed. > (Descriptor: file:/E:/Program > Files/apache-ctakes-3.2.2-rc2/desc/ctakes-ytex-uima/desc/analysis_engine/SegmentRegexAnnotator.xml) > at com.algotec.nlp.RunEngine.createCasObjects(RunEngine.java:1413) > at com.algotec.nlp.RunEngine.ensureCasObjects(RunEngine.java:1373) > at com.algotec.nlp.RunEngine.analyze(RunEngine.java:954) > at > com.algotec.nlp.servlet.ReportNLPServlet.doPost(ReportNLPServlet.java:128) > at > com.algotec.nlp.servlet.ReportNLPServlet.doPost(ReportNLPServlet.java:103) > at javax.servlet.http.HttpServlet.service(HttpServlet.java:647) > at javax.servlet.http.HttpServlet.service(HttpServlet.java:728) > at > org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:305) > at > org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210) > at > org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:51) > at > org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243) > at > org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210) > at > org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:222) > at > org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:123) > at > org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:502) > at > org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:171) > at > org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:100) > at > org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:953) > at > org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:118) > at > org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:408) > at > org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1041) > at > org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:603) > at > org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:310) > at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source) > at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown > Source) > at java.lang.Thread.run(Unknown Source) > Caused by: org.apache.uima.resource.ResourceInitializationException: > Initialization of annotator class > "org.apache.ctakes.ytex.uima.annotators.SegmentRegexAnnotator" failed. > (Descriptor: file:/E:/Program > Files/apache-ctakes-3.2.2-rc2/desc/ctakes-ytex-uima/desc/analysis_engine/SegmentRegexAnnotator.xml) > at > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252) > at > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156) > at > org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94) > at > org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62) > at > org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269) > at > org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387) > at > org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254) > at > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431) > at > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375) > at > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185) > at > org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94) > at > org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62) > at > org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269) > at > org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387) > at > org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254) > at > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431) > at > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375) > at > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185) > at > org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94) > at > org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62) > at > org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269) > at > org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:354) > at com.algotec.nlp.RunEngine.createCasObjects(RunEngine.java:1399) > ... 25 more > Caused by: org.springframework.beans.factory.access.BootstrapException: > Unable to initialize group definition. Group resource name > [classpath*:org/apache/ctakes/ytex/uima/beanRefContext.xml], factory key > [ytexApplicationContext]; nested exception is > org.springframework.beans.factory.BeanCreationException: Error creating > bean with name 'ytexApplicationContext' defined in URL > [jar:file:/E:/Data/Views/oranit_nlp/subprod1/nlp/java/.metadata/.plugins/org.eclipse.wst.server.core/tmp0/wtpwebapps/nlp/WEB-INF/lib/ctakes-ytex-web-3.2.2-classes.jar!/org/apache/ctakes/ytex/uima/beanRefContext.xml]: > Instantiation of bean failed; nested exception is > org.springframework.beans.BeanInstantiationException: Could not instantiate > bean class > [org.springframework.context.support.ClassPathXmlApplicationContext]: > Constructor threw exception; nested exception is > org.springframework.beans.factory.BeanCreationException: Error creating > bean with name 'txAdvice' defined in class path resource > [org/apache/ctakes/ytex/beans-datasource.xml]: Cannot resolve reference to > bean 'transactionManager' while setting bean property 'transactionManager'; > nested exception is > org.springframework.beans.factory.BeanCreationException: Error creating > bean with name 'transactionManager' defined in class path resource > [org/apache/ctakes/ytex/beans-datasource.xml]: Instantiation of bean > failed; nested exception is java.lang.NoClassDefFoundError: > org/hibernate/HibernateException > at > org.springframework.beans.factory.access.SingletonBeanFactoryLocator.useBeanFactory(SingletonBeanFactoryLocator.java:386) > at > org.apache.ctakes.ytex.uima.ApplicationContextHolder.getApplicationContext(ApplicationContextHolder.java:79) > at > org.apache.ctakes.ytex.uima.annotators.SegmentRegexAnnotator.initialize(SegmentRegexAnnotator.java:65) > at > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250) > ... 47 more > Caused by: org.springframework.beans.factory.BeanCreationException: Error > creating bean with name 'ytexApplicationContext' defined in URL > [jar:file:/E:/Data/Views/oranit_nlp/subprod1/nlp/java/.metadata/.plugins/org.eclipse.wst.server.core/tmp0/wtpwebapps/nlp/WEB-INF/lib/ctakes-ytex-web-3.2.2-classes.jar!/org/apache/ctakes/ytex/uima/beanRefContext.xml]: > Instantiation of bean failed; nested exception is > org.springframework.beans.BeanInstantiationException: Could not instantiate > bean class > [org.springframework.context.support.ClassPathXmlApplicationContext]: > Constructor threw exception; nested exception is > org.springframework.beans.factory.BeanCreationException: Error creating > bean with name 'txAdvice' defined in class path resource > [org/apache/ctakes/ytex/beans-datasource.xml]: Cannot resolve reference to > bean 'transactionManager' while setting bean property 'transactionManager'; > nested exception is > org.springframework.beans.factory.BeanCreationException: Error creating > bean with name 'transactionManager' defined in class path resource > [org/apache/ctakes/ytex/beans-datasource.xml]: Instantiation of bean > failed; nested exception is java.lang.NoClassDefFoundError: > org/hibernate/HibernateException > at > org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:288) > at > org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:1035) > at > org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:939) > at > org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:485) > at > org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:456) > at > org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:294) > at > org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:225) > at > org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:291) > at > org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:193) > at > org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:609) > at > org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:918) > at > org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:469) > at > org.springframework.context.access.ContextSingletonBeanFactoryLocator.initializeDefinition(ContextSingletonBeanFactoryLocator.java:143) > at > org.springframework.beans.factory.access.SingletonBeanFactoryLocator.useBeanFactory(SingletonBeanFactoryLocator.java:381) > ... 50 more > Caused by: org.springframework.beans.BeanInstantiationException: Could not > instantiate bean class > [org.springframework.context.support.ClassPathXmlApplicationContext]: > Constructor threw exception; nested exception is > org.springframework.beans.factory.BeanCreationException: Error creating > bean with name 'txAdvice' defined in class path resource > [org/apache/ctakes/ytex/beans-datasource.xml]: Cannot resolve reference to > bean 'transactionManager' while setting bean property 'transactionManager'; > nested exception is > org.springframework.beans.factory.BeanCreationException: Error creating > bean with name 'transactionManager' defined in class path resource > [org/apache/ctakes/ytex/beans-datasource.xml]: Instantiation of bean > failed; nested exception is java.lang.NoClassDefFoundError: > org/hibernate/HibernateException > at > org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:162) > at > org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:110) > at > org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:280) > ... 63 more > Caused by: org.springframework.beans.factory.BeanCreationException: Error > creating bean with name 'txAdvice' defined in class path resource > [org/apache/ctakes/ytex/beans-datasource.xml]: Cannot resolve reference to > bean 'transactionManager' while setting bean property 'transactionManager'; > nested exception is > org.springframework.beans.factory.BeanCreationException: Error creating > bean with name 'transactionManager' defined in class path resource > [org/apache/ctakes/ytex/beans-datasource.xml]: Instantiation of bean > failed; nested exception is java.lang.NoClassDefFoundError: > org/hibernate/HibernateException > at > org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:328) > at > org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:106) > at > org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyPropertyValues(AbstractAutowireCapableBeanFactory.java:1360) > at > org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1118) > at > org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:517) > at > org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:456) > at > org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:294) > at > org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:225) > at > org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:291) > at > org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:193) > at > org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:609) > at > org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:918) > at > org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:469) > at > org.springframework.context.support.ClassPathXmlApplicationContext.<init>(ClassPathXmlApplicationContext.java:139) > at > org.springframework.context.support.ClassPathXmlApplicationContext.<init>(ClassPathXmlApplicationContext.java:93) > at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native > Method) > at sun.reflect.NativeConstructorAccessorImpl.newInstance(Unknown > Source) > at > sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source) > at java.lang.reflect.Constructor.newInstance(Unknown Source) > at > org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:147) > ... 65 more > Caused by: org.springframework.beans.factory.BeanCreationException: Error > creating bean with name 'transactionManager' defined in class path resource > [org/apache/ctakes/ytex/beans-datasource.xml]: Instantiation of bean > failed; nested exception is java.lang.NoClassDefFoundError: > org/hibernate/HibernateException > at > org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.instantiateBean(AbstractAutowireCapableBeanFactory.java:997) > at > org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:943) > at > org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:485) > at > org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:456) > at > org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:294) > at > org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:225) > at > org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:291) > at > org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:193) > at > org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:322) > ... 84 more > Caused by: java.lang.NoClassDefFoundError: org/hibernate/HibernateException > at java.lang.Class.getDeclaredConstructors0(Native Method) > at java.lang.Class.privateGetDeclaredConstructors(Unknown Source) > at java.lang.Class.getConstructor0(Unknown Source) > at java.lang.Class.getDeclaredConstructor(Unknown Source) > at > org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:67) > at > org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.instantiateBean(AbstractAutowireCapableBeanFactory.java:990) > ... 92 more > Caused by: java.lang.ClassNotFoundException: > org.hibernate.HibernateException > at > org.apache.catalina.loader.WebappClassLoader.loadClass(WebappClassLoader.java:1702) > at > org.apache.catalina.loader.WebappClassLoader.loadClass(WebappClassLoader.java:1547) > ... 98 more > > >
