I've noticed that the ctakes-distribution doesn't seem to package the resources. Manually downloading the resources from the website and following the directions for coping into the resources directory solved the issues for me.
https://cwiki.apache.org/confluence/display/CTAKES/cTAKES+3.2+User+Install+Guide On Tue, Sep 22, 2015 at 7:28 AM, Geise, Brandon D. <bdge...@geisinger.edu> wrote: > As a follow-up I've followed the distribution packaging strategy to package > my application and I've gotten past the error below, but now I'm running into > the error below: > Caused by: org.apache.uima.resource.ResourceInitializationException: Could > not access the resource data at > resources\org\apache\ctakes\dictionary\lookup\fast\cakesHsql.xml. > > I've double checked all my paths and tried changing from relative to absolute > but still no luck? Has anyone run into this before and have a suggestion on > where to look? > > Thanks, > Brandon > > > From: Geise, Brandon D. > Sent: Monday, September 21, 2015 9:59 AM > To: 'dev@ctakes.apache.org' <dev@ctakes.apache.org> > Subject: Packaging Ctakes Application > > Hi All, > > I've created a test application using Ctakes and now would like to package > into jar. What I've tried is creating a single jar with all resources in the > JAR and it starts loading the models as expected for the > TokenizerAnnotatorPTB (default from cTakes) but close to the end of the > loading the models I get a URI is not hierarchical error. > > Loading configuration. > Loading feature templates. > Loading lexica. > Loading model: > ................................ > Loading model: > ............................. > URI is not hierarchical > java.lang.IllegalArgumentException: URI is not hierarchical > > > If I run the same from Eclipse it looks like > Loading configuration. > Loading feature templates. > Loading lexica. > Loading model: > ................................ > Loading model: > ............................. > 21 Sep 2015 09:47:19 INFO AbstractJCasTermAnnotator - Using dictionary > lookup window type: org.apache.ctakes.typesystem.type.textspan.Sentence > > Can someone offer some suggestions on the best way to package a maven > application that uses cTakes? Based on another thread I have even tried to > extract the resources folder and specify in the classpath but I'm still > receiving the same error. > > Thanks, > Brandon > > > IMPORTANT WARNING: The information in this message (and the documents > attached to it, if any) is confidential and may be legally privileged. It is > intended solely for the addressee. Access to this message by anyone else is > unauthorized. If you are not the intended recipient, any disclosure, copying, > distribution or any action taken, or omitted to be taken, in reliance on it > is prohibited and may be unlawful. If you have received this message in > error, please delete all electronic copies of this message (and the documents > attached to it, if any), destroy any hard copies you may have created and > notify me immediately by replying to this email. Thank you. > > Geisinger Health System utilizes an encryption process to safeguard Protected > Health Information and other confidential data contained in external e-mail > messages. If email is encrypted, the recipient will receive an e-mail > instructing them to sign on to the Geisinger Health System Secure E-mail > Message Center to retrieve the encrypted e-mail.
