Hi Alaa, The -shortest- answer is that you'll need to run the dictionary creation tool. There are instructions in older devlist threads. By default the dictionary creation tool does add icd9 and icd10 tables to the dictionary. The problem is that in Umls 2011AB those codes weren't very well populated. The 2015AB icd# set is much more rich so those tables should be pretty good. Then in ctakes you would look up annotations by icd9 or icd10 codes instead of by cui: OntologyConceptUtil.getAnnotationsByCode( jcas, lookupWindow, icd#Code ); OntologyConceptUtil.getAnnotationsByCode( jcas, icd#Code );
Sean -----Original Message----- From: Savova, Guergana [mailto:[email protected]] Sent: Tuesday, December 08, 2015 12:17 PM To: [email protected] Subject: RE: ctakes with icd10 Hi Alaa, You need to create a resource off the terminology/ontology you want to use (in this case ICD9 or ICD10). Then run that resource with cTAKES for the fast dictionary lookup. There is cTAKES code and some documentation on how to create that resource. By default, cTAKES runs with a resource created from the English version of SNOMED CT and RxNORM. Hope this helps. --Guergana -----Original Message----- From: Alaa al Barari [mailto:[email protected]] Sent: Tuesday, December 8, 2015 10:01 AM To: [email protected] Subject: ctakes with icd10 Hi, I downloaded Latest umls version, and I want to know how to make ctakes work with icd10 and icd9. Thanks
