Patrick,

I have the smoking-status component of cTAKES running without exceptions. I 
also combined it into the AggregatePlaintextFastUMLSProcessor, on 
https://issues.apache.org/jira/browse/CTAKES-370 you can find my 
AggregatePlaintextFastUMLSProcessor.xml and the necessary steps on how to 
integrate it. 

The same steps are necessary in your case to just run the smoking-status 
component. 

I noticed that many initial cTAKES problems boil down to missing or not found 
resources. In your stacktrace there is :

Caused by: org.apache.uima.resource.ResourceInitializationException: An import 
could not be resolved.  No .xml file with name 
"org.apache.ctakes.core.analysis_engine.TokenizerAnnotator" was found in the 
class path or data path. 

As written in https://issues.apache.org/jira/browse/CTAKES-370 , this 
TokenizerAnnotator is imported in ProductionPostSentenceAggregate_step1.xml 
from the smoking-status component. To make it work, I had to give it an 
absolute or relative path to where this TokenizerAnnotator.xml actually was on 
my file system.

Hope it helps,
Tomasz

________________________________________
From: Patrick Eads [patrick.e...@dartmouth.edu]
Sent: Tuesday, January 12, 2016 4:34 PM
To: dev@ctakes.apache.org
Subject: RE: Getting ctakes smoking-status component to run in Eclipse (repost)

Hello all,

I am reposting this on the advice of a developer. Below please find the comment 
thread already in progress.

We are trying to get the ctakes smoking-status component to run after getting 
the code from SVN and successfully compiling it. Following all of the steps 
here: 
https://urldefense.proofpoint.com/v2/url?u=https-3A__cwiki.apache.org_confluence_display_CTAKES_cTAKES-2B3.2-2BDeveloper-2BInstall-2BGuide&d=BQIFAg&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=WVWuRCArUkT-KephujkeDXUIxpgJLSFpIcMwJKwfMp8&s=sU7N53JIbhAO_vfUc8O13mDkTzLCh1anfWuASe3tV5c&e=
 , we are able to successful test the clinical-pipeline by processing the 
testpatient_plaintext_1.txt from the User Install Guide. However, when we 
attempt to load the SimulatedProdSmokingTAE.xml after running the 
smoking-status project, the following exception is thrown (sorry for the long 
stack trace):

1/7/16 2:45:14 PM - 17: 
org.apache.uima.tools.cvd.MainFrame.handleException(526): SEVERE: 
Initialization of annotator class 
"org.apache.ctakes.smokingstatus.ae.ClassifiableEntries" failed.  (Descriptor: 
file:/home/.../ctakes/ctakes-smoking-status/desc/analysis_engine/ClassifiableEntriesAnnotator.xml)
org.apache.uima.resource.ResourceInitializationException: Initialization of 
annotator class "org.apache.ctakes.smokingstatus.ae.ClassifiableEntries" 
failed.  (Descriptor: 
file:/home/.../ctakes/ctakes-smoking-status/desc/analysis_engine/ClassifiableEntriesAnnotator.xml)
                at 
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252)
                at 
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
                at 
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
                at 
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
                at 
org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
                at 
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
                at 
org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
                at 
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
                at 
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
                at 
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
                at 
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
                at 
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
                at 
org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
                at 
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:354)
                at 
org.apache.uima.tools.cvd.MainFrame.setupAE(MainFrame.java:1484)
                at 
org.apache.uima.tools.cvd.MainFrame.loadAEDescriptor(MainFrame.java:476)
                at 
org.apache.uima.tools.cvd.control.AnnotatorOpenEventHandler.actionPerformed(AnnotatorOpenEventHandler.java:52)
                at 
javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2022)
                at 
javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2348)
                at 
javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402)
                at 
javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259)
                at javax.swing.AbstractButton.doClick(AbstractButton.java:376)
                at 
javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItemUI.java:833)
                at 
javax.swing.plaf.basic.BasicMenuItemUI$Handler.menuDragMouseReleased(BasicMenuItemUI.java:943)
                at 
javax.swing.JMenuItem.fireMenuDragMouseReleased(JMenuItem.java:586)
                at 
javax.swing.JMenuItem.processMenuDragMouseEvent(JMenuItem.java:483)
                at javax.swing.JMenuItem.processMouseEvent(JMenuItem.java:429)
                at 
javax.swing.MenuSelectionManager.processMouseEvent(MenuSelectionManager.java:329)
                at 
javax.swing.plaf.basic.BasicPopupMenuUI$MouseGrabber.eventDispatched(BasicPopupMenuUI.java:870)
                at 
java.awt.Toolkit$SelectiveAWTEventListener.eventDispatched(Toolkit.java:2425)
                at 
java.awt.Toolkit$ToolkitEventMulticaster.eventDispatched(Toolkit.java:2317)
                at java.awt.Toolkit.notifyAWTEventListeners(Toolkit.java:2275)
                at java.awt.Component.dispatchEventImpl(Component.java:4787)
                at java.awt.Container.dispatchEventImpl(Container.java:2294)
                at java.awt.Component.dispatchEvent(Component.java:4713)
                at 
java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4888)
                at 
java.awt.LightweightDispatcher.processMouseEvent(Container.java:4525)
                at 
java.awt.LightweightDispatcher.dispatchEvent(Container.java:4466)
                at java.awt.Container.dispatchEventImpl(Container.java:2280)
                at java.awt.Window.dispatchEventImpl(Window.java:2750)
                at java.awt.Component.dispatchEvent(Component.java:4713)
                at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:758)
                at java.awt.EventQueue.access$500(EventQueue.java:97)
                at java.awt.EventQueue$3.run(EventQueue.java:709)
                at java.awt.EventQueue$3.run(EventQueue.java:703)
                at java.security.AccessController.doPrivileged(Native Method)
                at 
java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:76)
                at 
java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:86)
                at java.awt.EventQueue$4.run(EventQueue.java:731)
                at java.awt.EventQueue$4.run(EventQueue.java:729)
                at java.security.AccessController.doPrivileged(Native Method)
                at 
java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:76)
                at java.awt.EventQueue.dispatchEvent(EventQueue.java:728)
                at 
org.GNOME.Accessibility.AtkWrapper$5.dispatchEvent(AtkWrapper.java:697)
                at 
java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:201)
                at 
java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
                at 
java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
                at 
java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
                at 
java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
                at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
Caused by: org.apache.uima.resource.ResourceInitializationException: An import 
could not be resolved.  No .xml file with name 
"org.apache.ctakes.core.analysis_engine.TokenizerAnnotator" was found in the 
class path or data path. (Descriptor: 
file:/home/.../ctakes/ctakes-smoking-status-res/target/classes/org/apache/ctakes/smokingstatus/analysis_engine/ProductionPostSentenceAggregate_step1.xml)
                at 
org.apache.ctakes.smokingstatus.ae.ClassifiableEntries.initialize(ClassifiableEntries.java:178)
                at 
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
                ... 59 more
Caused by: org.apache.uima.resource.ResourceInitializationException: An import 
could not be resolved.  No .xml file with name 
"org.apache.ctakes.core.analysis_engine.TokenizerAnnotator" was found in the 
class path or data path. (Descriptor: 
file:/home/.../ctakes/ctakes-smoking-status-res/target/classes/org/apache/ctakes/smokingstatus/analysis_engine/ProductionPostSentenceAggregate_step1.xml)
                at 
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:159)
                at 
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
                at 
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
                at 
org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
                at 
org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:314)
                at 
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:425)
                at 
org.apache.ctakes.smokingstatus.ae.ClassifiableEntries.initialize(ClassifiableEntries.java:164)
                ... 60 more
Caused by: org.apache.uima.util.InvalidXMLException: An import could not be 
resolved.  No .xml file with name 
"org.apache.ctakes.core.analysis_engine.TokenizerAnnotator" was found in the 
class path or data path. (Descriptor: 
file:/home/.../ctakes/ctakes-smoking-status-res/target/classes/org/apache/ctakes/smokingstatus/analysis_engine/ProductionPostSentenceAggregate_step1.xml)
                at 
org.apache.uima.resource.metadata.impl.Import_impl.findAbsoluteUrl(Import_impl.java:107)
                at 
org.apache.uima.analysis_engine.impl.AnalysisEngineDescription_impl.resolveDelegateAnalysisEngineImports(AnalysisEngineDescription_impl.java:798)
                at 
org.apache.uima.analysis_engine.impl.AnalysisEngineDescription_impl.resolveDelegateAnalysisEngineImports(AnalysisEngineDescription_impl.java:765)
                at 
org.apache.uima.analysis_engine.impl.AnalysisEngineDescription_impl.getDelegateAnalysisEngineSpecifiers(AnalysisEngineDescription_impl.java:193)
                at 
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:147)
                ... 66 more


Please let me know if you have any advice. Thank you.

Regards,

Patrick Eads


From: Finan, Sean [mailto:sean.fi...@childrens.harvard.edu]
Sent: Tuesday, January 12, 2016 5:24 PM
To: Patrick Eads <patrick.e...@dartmouth.edu>
Subject: RE: Getting ctakes smoking-status component to run in Eclipse

Hi Patrick,

My apologies for not getting back to you.  I have had one task after another 
thrown onto my plate at work, and I haven’t dedicated any personal time to 
ctakes in the last couple of weeks.  I don’t know if I’ll be able to pull 
together any time for this over the next week.  Perhaps reposting on the 
listserv is the way to go.

Sean

From: Patrick Eads [mailto:patrick.e...@dartmouth.edu]
Sent: Tuesday, January 12, 2016 3:12 PM
To: Finan, Sean
Subject: RE: Getting ctakes smoking-status component to run in Eclipse


Hi Sean,

I didn’t want to burden the mailserv with this and we can move any pertinent 
discussion back as needed, but have you had any time to look at the workflow?

Regards,

Patrick

From: Finan, Sean<mailto:sean.fi...@childrens.harvard.edu>
Sent: Thursday, January 7, 2016 3:50 PM
To: dev@ctakes.apache.org<mailto:dev@ctakes.apache.org>
Subject: RE: Getting ctakes smoking-status component to run in Eclipse

Hi Patrick,

That is very strange.  If I can find some time later I'll try to run the 
workflow myself and see what happens.

Sean

-----Original Message-----
From: Patrick Eads [mailto:patrick.e...@dartmouth.edu]
Sent: Thursday, January 07, 2016 3:48 PM
To: dev@ctakes.apache.org<mailto:dev@ctakes.apache.org>
Subject: RE: Getting ctakes smoking-status component to run in Eclipse

Hi Sean,

I'm pulling the head from 
https://urldefense.proofpoint.com/v2/url?u=https-3A__svn.apache.org_repos_asf_ctakes_trunk&d=BQIFAg&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=I2RDR92crNxCMkNkHohpBpc_wMG1FJ2xFSfWwgVIxW8&s=v3FlCkQgYLzmZHBhHASLna5gkLUIQ0LqwPrjavSIuew&e=
 .

Regards,

Patrick

-----Original Message-----
From: Finan, Sean [mailto:sean.fi...@childrens.harvard.edu]
Sent: Thursday, January 07, 2016 3:12 PM
To: dev@ctakes.apache.org<mailto:dev@ctakes.apache.org>
Subject: RE: Getting ctakes smoking-status component to run in Eclipse

Hi Patrick,

What version of ctakes are you running?  The stack trace looks a little strange.

The Tokenizer used by the smoking status module was changed from 
TokenizerAnnotator to tokenizerAnnotatorPTB in version 2.3 on 5/11/2012.  But 
in your trace it looks like the TokenizerAnnotator class is being called.  
Also, it looks like it is being called directly instead of indirectly through 
an .xml

Sean



-----Original Message-----
From: Patrick Eads [mailto:patrick.e...@dartmouth.edu]
Sent: Thursday, January 07, 2016 3:00 PM
To: dev@ctakes.apache.org<mailto:dev@ctakes.apache.org>
Subject: Getting ctakes smoking-status component to run in Eclipse

Hello all,

We are trying to get the ctakes smoking-status component to run after getting 
the code from SVN and successfully compiling it. Following all of the steps 
here: 
https://urldefense.proofpoint.com/v2/url?u=https-3A__cwiki.apache.org_confluence_display_CTAKES_cTAKES-2B3.2-2BDeveloper-2BInstall-2BGuide&d=BQIFAg&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=WVWuRCArUkT-KephujkeDXUIxpgJLSFpIcMwJKwfMp8&s=sU7N53JIbhAO_vfUc8O13mDkTzLCh1anfWuASe3tV5c&e=
 , we are able to successful test the clinical-pipeline by processing the 
testpatient_plaintext_1.txt from the User Install Guide. However, when we 
attempt to load the SimulatedProdSmokingTAE.xml after running the 
smoking-status project, the following exception is thrown (sorry for the long 
stack trace):

1/7/16 2:45:14 PM - 17: 
org.apache.uima.tools.cvd.MainFrame.handleException(526): SEVERE: 
Initialization of annotator class 
"org.apache.ctakes.smokingstatus.ae.ClassifiableEntries" failed.  (Descriptor: 
file:/home/.../ctakes/ctakes-smoking-status/desc/analysis_engine/ClassifiableEntriesAnnotator.xml)
org.apache.uima.resource.ResourceInitializationException: Initialization of 
annotator class "org.apache.ctakes.smokingstatus.ae.ClassifiableEntries" 
failed.  (Descriptor: 
file:/home/.../ctakes/ctakes-smoking-status/desc/analysis_engine/ClassifiableEntriesAnnotator.xml)
                at 
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252)
                at 
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
                at 
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
                at 
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
                at 
org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
                at 
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
                at 
org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
                at 
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
                at 
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
                at 
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
                at 
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
                at 
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
                at 
org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
                at 
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:354)
                at 
org.apache.uima.tools.cvd.MainFrame.setupAE(MainFrame.java:1484)
                at 
org.apache.uima.tools.cvd.MainFrame.loadAEDescriptor(MainFrame.java:476)
                at 
org.apache.uima.tools.cvd.control.AnnotatorOpenEventHandler.actionPerformed(AnnotatorOpenEventHandler.java:52)
                at 
javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2022)
                at 
javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2348)
                at 
javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402)
                at 
javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259)
                at javax.swing.AbstractButton.doClick(AbstractButton.java:376)
                at 
javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItemUI.java:833)
                at 
javax.swing.plaf.basic.BasicMenuItemUI$Handler.menuDragMouseReleased(BasicMenuItemUI.java:943)
                at 
javax.swing.JMenuItem.fireMenuDragMouseReleased(JMenuItem.java:586)
                at 
javax.swing.JMenuItem.processMenuDragMouseEvent(JMenuItem.java:483)
                at javax.swing.JMenuItem.processMouseEvent(JMenuItem.java:429)
                at 
javax.swing.MenuSelectionManager.processMouseEvent(MenuSelectionManager.java:329)
                at 
javax.swing.plaf.basic.BasicPopupMenuUI$MouseGrabber.eventDispatched(BasicPopupMenuUI.java:870)
                at 
java.awt.Toolkit$SelectiveAWTEventListener.eventDispatched(Toolkit.java:2425)
                at 
java.awt.Toolkit$ToolkitEventMulticaster.eventDispatched(Toolkit.java:2317)
                at java.awt.Toolkit.notifyAWTEventListeners(Toolkit.java:2275)
                at java.awt.Component.dispatchEventImpl(Component.java:4787)
                at java.awt.Container.dispatchEventImpl(Container.java:2294)
                at java.awt.Component.dispatchEvent(Component.java:4713)
                at 
java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4888)
                at 
java.awt.LightweightDispatcher.processMouseEvent(Container.java:4525)
                at 
java.awt.LightweightDispatcher.dispatchEvent(Container.java:4466)
                at java.awt.Container.dispatchEventImpl(Container.java:2280)
                at java.awt.Window.dispatchEventImpl(Window.java:2750)
                at java.awt.Component.dispatchEvent(Component.java:4713)
                at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:758)
                at java.awt.EventQueue.access$500(EventQueue.java:97)
                at java.awt.EventQueue$3.run(EventQueue.java:709)
                at java.awt.EventQueue$3.run(EventQueue.java:703)
                at java.security.AccessController.doPrivileged(Native Method)
                at 
java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:76)
                at 
java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:86)
                at java.awt.EventQueue$4.run(EventQueue.java:731)
                at java.awt.EventQueue$4.run(EventQueue.java:729)
                at java.security.AccessController.doPrivileged(Native Method)
                at 
java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:76)
                at java.awt.EventQueue.dispatchEvent(EventQueue.java:728)
                at 
org.GNOME.Accessibility.AtkWrapper$5.dispatchEvent(AtkWrapper.java:697)
                at 
java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:201)
                at 
java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
                at 
java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
                at 
java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
                at 
java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
                at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
Caused by: org.apache.uima.resource.ResourceInitializationException: An import 
could not be resolved.  No .xml file with name 
"org.apache.ctakes.core.analysis_engine.TokenizerAnnotator" was found in the 
class path or data path. (Descriptor: 
file:/home/.../ctakes/ctakes-smoking-status-res/target/classes/org/apache/ctakes/smokingstatus/analysis_engine/ProductionPostSentenceAggregate_step1.xml)
                at 
org.apache.ctakes.smokingstatus.ae.ClassifiableEntries.initialize(ClassifiableEntries.java:178)
                at 
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
                ... 59 more
Caused by: org.apache.uima.resource.ResourceInitializationException: An import 
could not be resolved.  No .xml file with name 
"org.apache.ctakes.core.analysis_engine.TokenizerAnnotator" was found in the 
class path or data path. (Descriptor: 
file:/home/.../ctakes/ctakes-smoking-status-res/target/classes/org/apache/ctakes/smokingstatus/analysis_engine/ProductionPostSentenceAggregate_step1.xml)
                at 
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:159)
                at 
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
                at 
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
                at 
org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
                at 
org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:314)
                at 
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:425)
                at 
org.apache.ctakes.smokingstatus.ae.ClassifiableEntries.initialize(ClassifiableEntries.java:164)
                ... 60 more
Caused by: org.apache.uima.util.InvalidXMLException: An import could not be 
resolved.  No .xml file with name 
"org.apache.ctakes.core.analysis_engine.TokenizerAnnotator" was found in the 
class path or data path. (Descriptor: 
file:/home/.../ctakes/ctakes-smoking-status-res/target/classes/org/apache/ctakes/smokingstatus/analysis_engine/ProductionPostSentenceAggregate_step1.xml)
                at 
org.apache.uima.resource.metadata.impl.Import_impl.findAbsoluteUrl(Import_impl.java:107)
                at 
org.apache.uima.analysis_engine.impl.AnalysisEngineDescription_impl.resolveDelegateAnalysisEngineImports(AnalysisEngineDescription_impl.java:798)
                at 
org.apache.uima.analysis_engine.impl.AnalysisEngineDescription_impl.resolveDelegateAnalysisEngineImports(AnalysisEngineDescription_impl.java:765)
                at 
org.apache.uima.analysis_engine.impl.AnalysisEngineDescription_impl.getDelegateAnalysisEngineSpecifiers(AnalysisEngineDescription_impl.java:193)
                at 
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:147)
                ... 66 more


Please let me know if you have any advice. Thank you.

Regards,

Patrick Eads

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