To Add more here is the query on dictionary
SELECT * FROM "PUBLIC"."CUI_TERMS" WHERE "TEXT" LIKE 'herpes zoster' 42338 1 2 herpes zoster zoster On Wed, Feb 15, 2017 at 3:14 PM, shahid ashraf <[email protected]> wrote: > Hi Sean > > I have created a dictionary with 6-7 vocabs with filtered semtypes. that > includes *[Disease or Syndrome]* > When i search the term "herpes zoster" i am getting multiple cuis e.g > > Ctakes matches: *"herpes" *to <refsem:UmlsConcept xmi:id="133" > codingScheme="CHV" code="6101" score="0.0" disambiguated="false" cui=" > C0019340" tui="T047" preferredText="Herpes NOS"/> > <refsem:UmlsConcept xmi:id="143" codingScheme="MDR" code="10019944" score > ="0.0" disambiguated="false" cui="C0019340" tui="T047" preferredText="Herpes > NOS"/> > and *"herpes zoster"* > <refsem:UmlsConcept xmi:id="97" codingScheme="SNOMEDCT_US" code="19551004" > score="0.0" disambiguated="false" cui="C0042338" tui="T005" preferredText > ="Human herpesvirus 3"/> > <refsem:UmlsConcept xmi:id="67" codingScheme="MSH" code="D014645" score=" > 0.0" disambiguated="false" cui="C0042338" tui="T005" preferredText="Human > herpesvirus 3"/> > > My Question is why not it returned the "herpes zoster" match to MDR > instead of MSH. When i did few greps on MRCONSO both vocabs have "herpes > zoster(C0019340)" > > grep '*C0042338*' MRCONSO.RRF | grep "Herpes zoster" > *C0042338|ENG|S|L0019360|PF|S0377939|Y|A2933029|479641014|19551004||SNOMEDCT_US|SY|19551004|Herpes > zoster|9|N|256|* > C0042338|ENG|S|L0019365|PF|S0048120|Y|A26631650||M0022527|D014645|MSH|ET|D014645|Herpes > zoster Virus|0|N|256| > C0042338|ENG|S|L0019365|VO|S0048121|Y|A0067793||M0022527|D014645|MSH|PM|D014645|Herpes > zoster Viruses|0|N|256| > C0042338|ENG|S|L0028839|PF|S0068313|Y|A26639692||M0022527|D014645|MSH|ET|D014645|Ocular > Herpes zoster Virus|0|N|256| > C0042338|ENG|S|L1105581|PF|S1327080|Y|A3286316|479640010| > 19551004||SNOMEDCT_US|SY|19551004|HZ - Herpes zoster virus|9|N|256| > C0042338|ENG|S|L1105582|PF|S1327081|Y|A3286317|479637010| > 19551004||SNOMEDCT_US|SY|19551004|HZ - Herpes zoster|9|N|256| > ➜ * META grep 'C0019360' MRCONSO.RRF | grep "MDR"* > *C0019360|ENG|S|L0019360|VC|S0377939|N|A0421203|||10019974|MDR|PT|10019974|Herpes > zoster|3|N|256|* > C0019360|ENG|S|L0019360|VC|S0377939|N|A25726963||| > 10019974|MDR|LLT|10019974|Herpes zoster|3|N|256| > C0019360|ENG|S|L0019360|VO|S0660815|Y|A25702167||| > 10019974|MDR|LLT|10019982|Herpes zoster NOS|3|N|256| > C0019360|ENG|S|L0036967|PF|S0085594|N|A25745497||| > 10019974|MDR|LLT|10040555|Shingles|3|N|256| > C0019360|ENG|S|L0043516|PF|S0100676|N|A25732030||| > 10019974|MDR|LLT|10067526|Zona|3|N|256| > > 2) .. Also how i can prioritize this to return MDR based CUI ??? > > -- > with Regards > Shahid Ashraf > -- with Regards Shahid Ashraf
