Hi Sean, First of all, a huge thank you for taking time to debug this issue. I really appreciate your help.
Second, I think my main message somehow got lost in translation (sorry, I should’ve included it for clarity with my recent emails). I never had any trouble running this pipeline in Eclipse. The “URI is not hierarchical” error only happens when I run it from command line. I run it using the following maven command: mvn exec:java -Dexec.mainClass="org.apache.ctakes.pipelines.UmlsLookupPipeline" -Dexec.args="" -Dctakes.umlsuser=<my umls login name> -Dctakes.umlspw=<my umls password> As I said in my previous email, the other pipeline (that does not have dictionary lookup) runs fine at command line. The error only happens when I run pipelines containing dictionary lookup. Dima > On Apr 26, 2017, at 13:36, Finan, Sean <sean.fi...@childrens.harvard.edu> > wrote: > > Hi Dima, > > Good news: no uri hierarchical error. > > All that I did was import your ctakes-misc pom as a maven project in > intellij. Then I created a run configuration with my sandbox as the working > directory, ctakes-misc as the classpath module, and my umls credentials in > the environment. > All database files were found, the pipeline ran, and I got output: > total 2448 > drwxrwx---+ 1 Administrators Domain Users 0 Apr 26 14:19 . > drwxrwx---+ 1 Administrators Domain Users 0 Apr 26 14:18 .. > -rwxrwx---+ 1 Administrators Domain Users 187675 Apr 26 14:19 > GenSurg_UmbilicalHernia_1.rtf.xmi > -rwxrwx---+ 1 Administrators Domain Users 238984 Apr 26 14:19 > OBGYN_Gen_Abscess_1.rtf.xmi > -rwxrwx---+ 1 Administrators Domain Users 82308 Apr 26 14:19 > OBGYN_HysterectomyAndBSO_1.rtf.xmi > -rwxrwx---+ 1 Administrators Domain Users 115983 Apr 26 14:19 > OBGYN_IUD_1.rtf.xmi > -rwxrwx---+ 1 Administrators Domain Users 35919 Apr 26 14:19 > OBGYN_LaborProgressNote_1.rtf.xmi > -rwxrwx---+ 1 Administrators Domain Users 112460 Apr 26 14:19 > OBGYN_MVAPrego_1.rtf.xmi > -rwxrwx---+ 1 Administrators Domain Users 173695 Apr 26 14:19 > OBGYN_PROMCheck_1.rtf.xmi > -rwxrwx---+ 1 Administrators Domain Users 340626 Apr 26 14:19 > Peds_Dysphagia_1.rtf.xmi > -rwxrwx---+ 1 Administrators Domain Users 390928 Apr 26 14:19 > Peds_FebrileSez_1.rtf.xmi > -rwxrwx---+ 1 Administrators Domain Users 115064 Apr 26 14:19 > Peds_RoutBirthNote_1.rtf.xmi > -rwxrwx---+ 1 Administrators Domain Users 101234 Apr 26 14:19 > VascSurg_AAA_Leak_1.rtf.xmi > -rwxrwx---+ 1 Administrators Domain Users 98015 Apr 26 14:19 > VascSurg_FollowUp_1.rtf.xmi > -rwxrwx---+ 1 Administrators Domain Users 218863 Apr 26 14:19 > VascSurg_PVD_1.rtf.xmi > -rwxrwx---+ 1 Administrators Domain Users 72902 Apr 26 14:19 > VascSurg_RO-AAA_1.rtf.xmi > -rwxrwx---+ 1 Administrators Domain Users 90825 Apr 26 14:19 > VascSurg_RO-DVT.rtf.xmi > -rwxrwx---+ 1 Administrators Domain Users 90827 Apr 26 14:19 > VascSurg_RO-DVT_1.rtf.xmi > > > > > Bad news: it looks like the hsqldb port of lvg2008 is not working. > > Caused by: org.hsqldb.HsqlException: error in script file line: 61 > C:\Spiffy\prj_ctakes_401\dev\ctakes-lvg-res\target\classes\org\apache\ctakes\lvg\data\HSqlDb\lvg2008 > java.io.IOException: read beyond end of file in statement [SET TABLE > PUBLIC.INFLECTION INDEX '3198299 60557 3198299 53129 0 0 0 0 1210464'] > > Caused by: org.hsqldb.HsqlException: Caused by: java.io.IOException: read > beyond end of file > > > At any rate, the code works but I think that something is missing from your > configuration. > Since it is a personal development environment you are kind of on your own. > Good luck, > Sean > > P.S. Get rid of the ctakes-resources-umls2011ab artifact in your pom. It > isn't doing anything. > > > > -----Original Message----- > From: Dligach, Dmitriy [mailto:ddlig...@luc.edu] > Sent: Wednesday, April 26, 2017 12:46 PM > To: dev@ctakes.apache.org > Subject: Re: URI is not hierarchical > > I am definitely still seeing the “URI is not hierarchical” issue. Here’s a > piece of information that might help you figure out what the problem is: > > > > It only happens if the pipeline includes dictionary lookup. For instance, > this one fails: > > > > https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_dmitriydligach_ctakes-2Dmisc_blob_master_src_main_java_org_apache_ctakes_pipelines_UmlsLookupPipeline.java&d=DwIGaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=Cv-_Ac9CLY7wNnflevRAn-a92vTj9x79u08OjKfQ9U4&s=MKa09-UzlhjAB_1jVyGOpVo1UHWrMDqjWiVAnk0jfPE&e= > > > > > But this one succeeds: > > > > https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_dmitriydligach_ctakes-2Dmisc_blob_master_src_main_java_org_apache_ctakes_pipelines_BasicPipeline.java&d=DwIGaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=Cv-_Ac9CLY7wNnflevRAn-a92vTj9x79u08OjKfQ9U4&s=U0zGx-soIiYY64nHK_tIAIpeind9vdIrAuDQIxh-4ek&e= > > > > > (it’s the same as the first one, but the dictionary lookup part is removed). > > > > Dima > > > > > > > >> On Apr 26, 2017, at 11:37, Finan, Sean <sean.fi...@childrens.harvard.edu> >> wrote: > >> > >> Hi again Dima, > >> > >> The piper files are not meant to replace uimafit. Uimafit is great for many >> purposes. > >> > >> As for that annoying old "URI is not hierarchical" bug, a while back I >> checked in a fix that worked for me. Since then I cannot duplicate it. > >> > >> Sean > >> > >> -----Original Message----- > >> From: Dligach, Dmitriy [mailto:ddlig...@luc.edu] > >> Sent: Wednesday, April 26, 2017 12:18 PM > >> To: dev@ctakes.apache.org > >> Subject: Re: URI is not hierarchical > >> > >> As I said in my previous email, the piper approach looks very promising. >> However many of us probably still have lots of existing uimaFIT pipelines >> and it would be nice to be able to run them from command line. > >> > >> So, are there any plans to finally fix this old “URI is not hierarchical” >> problem? Do we at least know what’s causing it? > >> > >> Dima > >> > >> > >> > >>> On Apr 14, 2017, at 12:14, Finan, Sean <sean.fi...@childrens.harvard.edu> >>> wrote: > >>> > >>> Ok, thanks. For your original question: > >>> > >>>> it fails with “URI is not hierarchical” when the dictionary lookup is >>>> enabled. > >>>> I believe this is an old issue, so are there any plans for fixing it in >>>> the new release? > >>> > >>> I thought that I had already fixed it. So much for my thorough testing. > >>> > >>> Let me know what happens with the piper approach. > >>> Sean > >>> > >>> > >>> -----Original Message----- > >>> From: Dligach, Dmitriy [mailto:ddlig...@luc.edu] > >>> Sent: Friday, April 14, 2017 12:47 PM > >>> To: dev@ctakes.apache.org > >>> Subject: Re: URI is not hierarchical > >>> > >>> Hi Sean, > >>> > >>> > >>> > >>> The pipeline I am trying to run is this: > >>> > >>> > >>> > >>> https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_dmitriydligach_ctakes-2Dmisc_blob_master_src_main_java_org_apache_ctakes_pipelines_UmlsLookupPipeline.java&d=DwIGaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=xe6RaWm66aSyUeXjU20x8dEc3xfYTHbadlwhgSdrIsw&s=ixO9vX_WJ7p-dpJc0RdnzRfjwQqbNw4gkLwf0SSpp0I&e= >>> > >>> > >>> > >>> > >>> (This is the UmlsLookupPipeline class). > >>> > >>> > >>> > >>> It runs fine in Eclipse but fails when I run from command line. > >>> > >>> > >>> > >>> I will look into the solution you are suggesting (thanks!). > >>> > >>> > >>> > >>> Dima > >>> > >>> > >>> > >>> > >>> > >>> > >>> > >>>> On Apr 14, 2017, at 11:35, Finan, Sean <sean.fi...@childrens.harvard.edu> >>>> wrote: > >>> > >>>> > >>> > >>>> Hi Dima, > >>> > >>>> > >>> > >>>> Where did you get that class? I don't have UmlsLookupPipeline or the >>>> package org.apache.ctakes.pipelines. > >>> > >>>> > >>> > >>>> If you want to run from command-line I highly recommend that you use the >>>> PiperFileRunner class in core.pipeline. > >>> > >>>> > >>> > >>>> To run the clinical pipeline use cli parameters: > >>> > >>>> -p DefaultFastPipeline.piper > >>> > >>>> -i {inputDir} > >>> > >>>> --xmiOut {outputDir} > >>> > >>>> --user {umlsUsername} > >>> > >>>> --pass {umlsPassword} > >>> > >>>> > >>> > >>>> If you have the binary installation there is a runClinicalPipeline script >>>> in bin/ > >>> > >>>> > >>> > >>>> PiperFileRunner can run other piper files and take other parameters > >>> > >>>> # Runs the pipeline in the piper file specified by -p (piperfile) > >>> > >>>> # with any other provided parameters. Standard parameters are: > >>> > >>>> # -i , --inputDir {inputDirectory} > >>> > >>>> # -o , --outputDir {outputDirectory} > >>> > >>>> # -s , --subDir {subDirectory} (for i/o) > >>> > >>>> # --xmiOut {xmiOutputDirectory} (if different from -o) > >>> > >>>> # -l , --lookupXml {dictionaryConfigFile} (fast only) > >>> > >>>> # --user {umlsUsername} > >>> > >>>> # --pass {umlsPassword} > >>> > >>>> # -? , --help > >>> > >>>> # > >>> > >>>> # Other parameters may be declared in the piper file using the cli >>>> command: > >>> > >>>> # cli {parameterName}={singleCharacter} > >>> > >>>> # For instance, for declaration of ParagraphAnnotator path to regex file >>>> optional parameter PARAGRAPH_TYPES_PATH, > >>> > >>>> # in the custom piper file add the line: > >>> > >>>> # cli PARAGRAPH_TYPES_PATH=t > >>> > >>>> # and when executing this script use: > >>> > >>>> # runPiperFile -p path/to/my/custom.piper -t path/to/my/custom.bsv >>>> ... > >>> > >>>> > >>> > >>>> > >>> > >>>> The above is a snippet from the runPiperFile script in the bin/ directory. > >>> > >>>> > >>> > >>>> I am in the process of writing documentation on piper files in the wiki. > >>> > >>>> > >>> > >>>> https://urldefense.proofpoint.com/v2/url?u=https-3A__cwiki.apache.org_confluence_display_CTAKES_Piper-2BFiles&d=DwIGaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=xe6RaWm66aSyUeXjU20x8dEc3xfYTHbadlwhgSdrIsw&s=pNVLJSOBMk5orJZ4Oy4ZwtpkPp0tU48-g1qxtpIBucw&e= >>>> > >>> > >>>> > >>> > >>>> > >>> > >>>> -----Original Message----- > >>> > >>>> From: Dligach, Dmitriy [mailto:ddlig...@luc.edu] > >>> > >>>> Sent: Friday, April 14, 2017 12:17 PM > >>> > >>>> To: cTAKES Developer list > >>> > >>>> Subject: URI is not hierarchical > >>> > >>>> > >>> > >>>> Dear cTAKES developers, > >>> > >>>> > >>> > >>>> > >>> > >>>> > >>> > >>>> I am trying to run a simple pipeline that involves dictionary lookup: > >>> > >>>> > >>> > >>>> > >>> > >>>> > >>> > >>>> https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_dmitriydligach_ctakes-2Dmisc_blob_master_src_main_java_org_apache_ctakes_pipelines_UmlsLookupPipeline.java&d=DwIGaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=-N-wYwlTFXbedV0kkcf_qgdQj3HYIeLCeKr9Q303b0Q&s=NWoDwPNChJkDhFseM3j8Gi7KNDdVqzi1BFt0onalf9I&e= >>>> > >>> > >>>> > >>> > >>>> > >>> > >>>> > >>> > >>>> from command line as follows: > >>> > >>>> > >>> > >>>> > >>> > >>>> > >>> > >>>> mvn exec:java >>>> -Dexec.mainClass=“org.apache.ctakes.pipelines.UmlsLookupPipeline” > >>> > >>>> > >>> > >>>> > >>> > >>>> > >>> > >>>> It runs fine if the dictionary lookup related fragmented is commented out, >>>> but it fails with “URI is not hierarchical” when the dictionary lookup is >>>> enabled. > >>> > >>>> > >>> > >>>> > >>> > >>>> > >>> > >>>> I believe this is an old issue, so are there any plans for fixing it in >>>> the new release? In the meantime, are there any workarounds? > >>> > >>>> > >>> > >>>> > >>> > >>>> > >>> > >>>> Many thanks! > >>> > >>>> > >>> > >>>> > >>> > >>>> > >>> > >>>> The full error is below. > >>> > >>>> > >>> > >>>> > >>> > >>>> > >>> > >>>> Dima > >>> > >>>> > >>> > >>>> > >>> > >>>> > >>> > >>>> > >>> > >>>> > >>> > >>>> > >>> > >>>> > >>> > >>>> 14 Apr 2017 11:04:24 INFO LvgAnnotator - URL for lvg.properties >>>> =file:/home/dima/.m2/repository/net/sourceforge/ctakesresources/ctakes-resources-lvg2008/4.0.0/ctakes-resources-lvg2008-4.0.0.jar!/org/apache/ctakes/lvg/data/config/lvg.properties > >>> > >>>> > >>> > >>>> 14 Apr 2017 11:04:24 INFO SentenceDetector - Sentence detector model >>>> file: org/apache/ctakes/core/sentdetect/sd-med-model.zip > >>> > >>>> > >>> > >>>> 14 Apr 2017 11:04:24 INFO TokenizerAnnotatorPTB - Initializing >>>> org.apache.ctakes.core.ae.TokenizerAnnotatorPTB > >>> > >>>> > >>> > >>>> 14 Apr 2017 11:04:24 INFO ContextDependentTokenizerAnnotator - Finite >>>> state machines loaded. > >>> > >>>> > >>> > >>>> 14 Apr 2017 11:04:24 INFO POSTagger - POS tagger model file: >>>> org/apache/ctakes/postagger/models/mayo-pos.zip > >>> > >>>> > >>> > >>>> 14 Apr 2017 11:04:24 INFO Chunker - Chunker model file: >>>> /home/dima/cTakes/trunk/ctakes-chunker-res/src/main/resources/org/apache/ctakes/chunker/models/chunker-model.zip > >>> > >>>> > >>> > >>>> 14 Apr 2017 11:04:26 INFO AbstractJCasTermAnnotator - Using dictionary >>>> lookup window type: org.apache.ctakes.typesystem.type.textspan.Sentence > >>> > >>>> > >>> > >>>> 14 Apr 2017 11:04:26 INFO AbstractJCasTermAnnotator - Exclusion tagset >>>> loaded: CC CD DT EX IN LS MD PDT POS PP PP$ PRP PRP$ RP TO VB VBD VBG VBN >>>> VBP VBZ WDT WP WPS WRB > >>> > >>>> > >>> > >>>> 14 Apr 2017 11:04:26 INFO AbstractJCasTermAnnotator - Using minimum term >>>> text span: 3 > >>> > >>>> > >>> > >>>> 14 Apr 2017 11:04:26 INFO AbstractJCasTermAnnotator - Using Dictionary >>>> Descriptor: org/apache/ctakes/dictionary/lookup/fast/sno_rx_16ab.xml > >>> > >>>> > >>> > >>>> 14 Apr 2017 11:04:26 INFO DictionaryDescriptorParser - Parsing dictionary >>>> specifications: > >>> > >>>> > >>> > >>>> 14 Apr 2017 11:04:26 INFO UmlsUserApprover - Checking UMLS Account at >>>> https://urldefense.proofpoint.com/v2/url?u=https-3A__uts-2Dws.nlm.nih.gov_restful_isValidUMLSUser&d=DwIGaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=-N-wYwlTFXbedV0kkcf_qgdQj3HYIeLCeKr9Q303b0Q&s=k4vvKW_sfiLO__5LyOVbw7jMlmz2h1urVXde-7hEzg8&e= >>>> for user dmitriydligach: > >>> > >>>> > >>> > >>>> .14 Apr 2017 11:04:26 INFO UmlsUserApprover - UMLS Account at >>>> https://urldefense.proofpoint.com/v2/url?u=https-3A__uts-2Dws.nlm.nih.gov_restful_isValidUMLSUser&d=DwIGaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=-N-wYwlTFXbedV0kkcf_qgdQj3HYIeLCeKr9Q303b0Q&s=k4vvKW_sfiLO__5LyOVbw7jMlmz2h1urVXde-7hEzg8&e= >>>> for user dmitriydligach has been validated > >>> > >>>> > >>> > >>>> > >>> > >>>> > >>> > >>>> 14 Apr 2017 11:04:26 INFO JdbcConnectionFactory - Connecting to >>>> jdbc:hsqldb:file:resources/org/apache/ctakes/dictionary/lookup/fast/sno_rx_16ab/sno_rx_16ab: > >>> > >>>> > >>> > >>>> 14 Apr 2017 11:04:26 INFO ENGINE - open start - state not modified > >>> > >>>> > >>> > >>>> ................. > >>> > >>>> > >>> > >>>> 14 Apr 2017 11:04:32 INFO JdbcConnectionFactory - Database connected > >>> > >>>> > >>> > >>>> 14 Apr 2017 11:04:32 INFO JdbcRareWordDictionary - Connected to cui and >>>> term table CUI_TERMS > >>> > >>>> > >>> > >>>> 14 Apr 2017 11:04:32 INFO JdbcConceptFactory - Connected to concept table >>>> TUI with class TUI > >>> > >>>> > >>> > >>>> 14 Apr 2017 11:04:32 INFO JdbcConceptFactory - Connected to concept table >>>> RXNORM with class LONG > >>> > >>>> > >>> > >>>> 14 Apr 2017 11:04:32 INFO JdbcConceptFactory - Connected to concept table >>>> PREFTERM with class PREFTERM > >>> > >>>> > >>> > >>>> 14 Apr 2017 11:04:32 INFO JdbcConceptFactory - Connected to concept table >>>> SNOMEDCT_US with class LONG > >>> > >>>> > >>> > >>>> [WARNING] > >>> > >>>> > >>> > >>>> java.lang.IllegalArgumentException: URI is not hierarchical > >>> > >>>> > >>> > >>>> at java.io.File.<init>(File.java:418) > >>> > >>>> > >>> > >>>> at >>>> org.apache.ctakes.lvg.resource.LvgCmdApiResourceImpl.load(LvgCmdApiResourceImpl.java:65) > >>> > >>>> > >>> > >>>> at >>>> org.apache.uima.resource.impl.ResourceManager_impl.registerResource(ResourceManager_impl.java:628) > >>> > >>>> > >>> > >>>> at >>>> org.apache.uima.resource.impl.ResourceManager_impl.initializeExternalResources(ResourceManager_impl.java:464) > >>> > >>>> > >>> > >>>> at >>>> org.apache.uima.resource.Resource_ImplBase.initialize(Resource_ImplBase.java:193) > >>> > >>>> > >>> > >>>> at >>>> org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.initialize(AnalysisEngineImplBase.java:157) > >>> > >>>> > >>> > >>>> at >>>> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:131) > >>> > >>>> > >>> > >>>> at >>>> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94) > >>> > >>>> > >>> > >>>> at >>>> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62) > >>> > >>>> > >>> > >>>> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:279) > >>> > >>>> > >>> > >>>> at >>>> org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:407) > >>> > >>>> > >>> > >>>> at >>>> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:256) > >>> > >>>> > >>> > >>>> at >>>> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:429) > >>> > >>>> > >>> > >>>> at >>>> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:373) > >>> > >>>> > >>> > >>>> at >>>> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:186) > >>> > >>>> > >>> > >>>> at >>>> org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711) > >>> > >>>> > >>> > >>>> at >>>> org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207) > >>> > >>>> > >>> > >>>> at >>>> org.apache.ctakes.pipelines.UmlsLookupPipeline.main(UmlsLookupPipeline.java:66) > >>> > >>>> > >>> > >>>> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) > >>> > >>>> > >>> > >>>> at >>>> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) > >>> > >>>> > >>> > >>>> at >>>> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) > >>> > >>>> > >>> > >>>> at java.lang.reflect.Method.invoke(Method.java:498) > >>> > >>>> > >>> > >>>> at org.codehaus.mojo.exec.ExecJavaMojo$1.run(ExecJavaMojo.java:282) > >>> > >>>> > >>> > >>>> at java.lang.Thread.run(Thread.java:745) > >>> > >>>> > >>> > >>>> [INFO] >>>> ------------------------------------------------------------------------ > >>> > >>>> > >>> > >>>> [INFO] BUILD FAILURE > >>> > >>>> > >>> > >>>> [INFO] >>>> ------------------------------------------------------------------------ > >>> > >>>> > >>> > >>>> [INFO] Total time: 9.900 s > >>> > >>>> > >>> > >>>> [INFO] Finished at: 2017-04-14T11:04:32-05:00 > >>> > >>>> > >>> > >>>> [INFO] Final Memory: 510M/1455M > >>> > >>>> > >>> > >>>> [INFO] >>>> ------------------------------------------------------------------------ > >>> > >>>> > >>> > >>>> [ERROR] Failed to execute goal >>>> org.codehaus.mojo:exec-maven-plugin:1.6.0:java (default-cli) on project >>>> ctakes-misc: An exception occured while executing the Java class. URI is >>>> not hierarchical -> [Help 1] > >>> > >>>> > >>> > >>>> [ERROR] > >>> > >>>> > >>> > >>>> [ERROR] To see the full stack trace of the errors, re-run Maven with the >>>> -e switch. > >>> > >>>> > >>> > >>>> [ERROR] Re-run Maven using the -X switch to enable full debug logging. > >>> > >>>> > >>> > >>>> [ERROR] > >>> > >>>> > >>> > >>>> [ERROR] For more information about the errors and possible solutions, >>>> please read the following articles: > >>> > >>>> > >>> > >>>> [ERROR] [Help 1] >>>> https://urldefense.proofpoint.com/v2/url?u=http-3A__cwiki.apache.org_confluence_display_MAVEN_MojoExecutionException&d=DwIGaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=-N-wYwlTFXbedV0kkcf_qgdQj3HYIeLCeKr9Q303b0Q&s=JfA-JsX45OHwuDl_DNkICQUwoIOMrYhdSxNKV1k_Ig4&e= >>>> > >>> > >>> > >>> > >> > > >
