Dear cTAKES developers, I am observing something strange. As soon as I add at the end of my pipeline the uncertainty/negation AEs:
aggregateBuilder.add( PolarityCleartkAnalysisEngine.createAnnotatorDescription() ); aggregateBuilder.add( UncertaintyCleartkAnalysisEngine.createAnnotatorDescription() ); the pipeline becomes 10-20 times slower. I just confirmed this again. As soon as I remove these two AEs at the end of my pipeline, it runs very fast again. It seems to get stuck often right after it outputs this warning: WARN DocumentIDAnnotationUtil - Unable to find DocumentIDAnnotation If I remove the two AEs, this warning disappears. The full pipeline is here: https://github.com/dmitriydligach/ctakes-misc/blob/master/src/main/java/org/apache/ctakes/pipelines/UmlsLookupPipeline.java Any clues? Thank you very much, Dima
