My bad, I didn't read too closely and thought this was going to be a coreference patch. I don't know this FSM code that well, so I am not an expert. My biggest concern at a glance is that these additions help find more true positives (as in your examples), can we verify that they won't create false positives? Tim
On Fri, 2017-09-29 at 06:25 +0000, Gandhi Rajan Natarajan wrote: > Hi Sean, > > Thanks again for the response. I guess its mistake from my side that > I dint send the complete text. Did you mean that with the text I > sent, the co-reference superscript-1 will be lost? > > Also as per your advice, We have created an issue - https://urldefen > se.proofpoint.com/v2/url?u=https- > 3A__issues.apache.org_jira_browse_CTAKES- > 2D459&d=DwIFAg&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=Heup- > IbsIg9Q1TPOylpP9FE4GTK- > OqdTDRRNQXipowRLRjx0ibQrHEo8uYx6674h&m=0kLxqu0Xu_2pjzCrVwxC4cd_1ubh_g > nqCIxz6hOzUUQ&s=Tihsi1dyNHsqsYbwyClGANfqk2Ov2nfQL2YuIV1L0CI&e= for > measurement FSM changes and attached the modified file changes. Could > someone have a look and know your thoughts please? > > Regards, > Gandhi > > > -----Original Message----- > From: Finan, Sean [mailto:sean.fi...@childrens.harvard.edu] > Sent: Thursday, September 28, 2017 8:21 PM > To: dev@ctakes.apache.org > Cc: Miller, Timothy <timothy.mil...@childrens.harvard.edu> > Subject: RE: Enabling drugner pipeline and identifying dates > [EXTERNAL] [SUSPICIOUS] > > Hi Gandhi, > > I don't recall you sending me that entire snippet of text. I think > that I only had your single example sentence. > You have discovered one of the quirks of software: "change the data, > change the result." > Ctakes is a system with many moving parts. Things that precede or > follow your original example sentence will change the evaluation of > that sentence. > With the pipeline you are using and the full note, you should see a > number (mine is 4) next to the first "thalomid" in the original > example sentence. If you click that number you should see (to the > right) 4 instances of "thalomid". > Tim can correct me here, but maybe the coreference module ranked the > links between "thalomid" as much higher than the rank between "study > treatment of thalomid 200mg" and "the treatment of hepatocellular > carcinoma" and discarded the encapsulating treatment texts from > markables? It is probably more complex than that. > > > > > we have also made some code changes in MeasurementFSM.java to > > identify certain measurements like '20 mg/m2' which was not > > identified out of the box. Should we send the code changes to you > > so that you can consider the same to be productized ? Please > > advise." > I don't know if you've noticed the recent emails on the dev list > involving Alexandru Zbarcea. Alex has been creating or commenting on > Jira items and attaching code for fixes and enhancements. This is a > widely used process and is fairly easy to follow. I think that the > following links are relevant: > Working with issues: https://urldefense.proofpoint.com/v2/url?u=http > s-3A__confluence.atlassian.com_jiracoreserver073_working-2Dwith- > 2Dissues- > 2D861257307.html&d=DwIFAg&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxe > FU&r=Heup-IbsIg9Q1TPOylpP9FE4GTK- > OqdTDRRNQXipowRLRjx0ibQrHEo8uYx6674h&m=0kLxqu0Xu_2pjzCrVwxC4cd_1ubh_g > nqCIxz6hOzUUQ&s=Fo-LGlsEfYJpgYcWvrDmor0B3YGxx5brZLelntVMxrU&e= > Creating patches: https://urldefense.proofpoint.com/v2/url?u=https- > 3A__confluence.atlassian.com_crucible_creating-2Dpatch-2Dfiles-2Dfor- > 2Dpre-2Dcommit-2Dreviews- > 2D298977458.html&d=DwIFAg&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxe > FU&r=Heup-IbsIg9Q1TPOylpP9FE4GTK- > OqdTDRRNQXipowRLRjx0ibQrHEo8uYx6674h&m=0kLxqu0Xu_2pjzCrVwxC4cd_1ubh_g > nqCIxz6hOzUUQ&s=wVhEQCU73iEplHm34bO2AtgaDUpjAvrFe4GFx5b6pYo&e= > Attaching files: https://urldefense.proofpoint.com/v2/url?u=https-3 > A__confluence.atlassian.com_jiracorecloud_attaching-2Dfiles-2Dand- > 2Dscreenshots-2Dto-2Dissues- > 2D765593805.html&d=DwIFAg&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxe > FU&r=Heup-IbsIg9Q1TPOylpP9FE4GTK- > OqdTDRRNQXipowRLRjx0ibQrHEo8uYx6674h&m=0kLxqu0Xu_2pjzCrVwxC4cd_1ubh_g > nqCIxz6hOzUUQ&s=eO_HZCkkeOg8jF3CMYnMxttXRHSM16qdwPl5nTW48zQ&e= > > I don't know if you have a jira account and permissions for the > ctakes project. An administrator may need to set that up for you. > > Thanks, > Sean > > -----Original Message----- > From: Gandhi Rajan Natarajan [mailto:gandhi.natara...@arisglobal.com] > Sent: Thursday, September 28, 2017 4:09 AM > To: dev@ctakes.apache.org > Subject: RE: Enabling drugner pipeline and identifying dates > [EXTERNAL] [SUSPICIOUS] > > Hi Sean, > > Thanks for the response. I was able to see the co-reference > superscript using the html file that you sent. Interestingly even I > was able to generate the sample HTML using piper GUI by having only > that single line - " The patient started study treatment of Thalomid > 200mg (days 1-21), and Epirubicin, 20 mg/m2 (days 1, 8, and 15) on > 06/07/02 for the treatment of hepatocellular carcinoma. " in the > input file. > > But when I change the input file content with the following lines: > > "This patient is participating in a Non-IND study; Protocol CG- > 000424: "Phase I/II of Thalidomide and Epirubicin in Patients with > Unresectable or Metastatic Hepatocellular Carcinoma".Information has > been received from the investigator regarding an 82 year-old male > patient who had gastrointestinal bleeding while on Thalomid, > Epirubicin, and Coumadin. He had a past medical history of > diverticulosis in 03/02 and a right atrial clot from intraventricular > catheter (IVC) for which he was started on Coumadin. During the > hospitalization for a right atrial clot in 03/02 hepatocellular > carcinoma was first noted and he was referred to an oncologist. The > patient started study treatment of Thalomid 200mg (days 1-21), and > Epirubicin, 20 mg/m2 (days 1, 8, and 15) on 06/07/02 for the > treatment of hepatocellular carcinoma. He was concomitantly > receiving Cardura, Ambien (for insomnia), Megace, Coumadin, and > Oxycodone. This patient presented to the emergency room with the > chief complaint of hematochezia. He reported noticing bright red > blood and small clots mixed in with his stool. On 07/13/02, he was > admitted due to gastrointestinal bleed. The physician ordered 2 > large bore intravenous lines and planned to transfuse for hematocrit > less than 30%. Due to the INR (international normalized ratio) level > of 3.0, Coumadin was held. He was also noted to have bilateral lower > extremity edema with dyspnea on exertion. On 07/13/02, he had a > chest X-ray PA and lateral done that showed no evidence of acute > pneumonia or congestive heart failure. On 07/14/02, he underwent an > ultrasound which was negative for deep vein thrombosis. This patient > did not take Thalomid on the day of his admittance to the hospital, > but resumed treatment shortly after with no return of symptoms. On > 07/15/02, he was discharged in stable condition. There have been no > further reports of bleeding at this time. Thedoctor has assessed the > hematochezia as related to Coumadin treatment and previously > diagnosed diverticulosis, and not to protocol therapy with Thalomid > and Epirubicin.Additional information received from the investigator > on 27Aug02 reveals that this male patient began on 07Jun02 two cycles > of therapy with Thalidomide and Epirubicin. His post cycle two > computed tomography scans revealed increase in size of liver lesion > with development of multiple new satellite nodules. On 29Jul02, the > investigator removed this patient from protocol for progressive > disease and recommended hospice care. After seeking a second opinion > from two other institutions, this patient was admitted to hospice on > 05Aug02. On 20Aug02, the investigator noted that this patient was > suffering worsening fatigue and got tired getting out of his > chair. On 25Aug02, this patient died due to disease > progression. The investigator assessed the death as not related to > study treatment and expected" > > The co-reference superscript is lost by then. Did you tried with the > complete text above by any chance in your piper GUI? Also I guess you > did not notice the question on my last post - " Sean, we have also > made some code changes in MeasurementFSM.java to identify certain > measurements like '20 mg/m2' which was not identified out of the > box. Should we send the code changes to you so that you can consider > the same to be productized ? Please advise." > > > Regards, > Gandhi > > > -----Original Message----- > From: Finan, Sean [mailto:sean.fi...@childrens.harvard.edu] > Sent: Wednesday, September 27, 2017 5:53 PM > To: dev@ctakes.apache.org > Subject: RE: Enabling drugner pipeline and identifying dates > [EXTERNAL] [SUSPICIOUS] > > Hi Gandhi, > > I am glad that you are feeling better. > I don't understand why you aren't getting the same output as me. I > just ran your example sentence with your piper with a fresh checkout > and get the html below. The css follows. Copy and paste into a file > and see if you see the corefs. > > ///////////////////////////////////////////////////// html, copy > into file ///////////////////////////////////////////////// > > <!DOCTYPE html> > <html> > <head> > <title>OneLiner Output</title> > </head> > <body> > <link rel="stylesheet" href="ctakes.pretty.css" type="text/css" > media="screen"> <h2>OneLiner</h2> <i>Text processing finished on: 9 > 27 2017, 08:15:31</i> <hr> > > <div id="content"> > > <p> > The patient <span class="AFF_" > onClick="iaf('AFF_NL_EVTNL_startedNL_SPC_[before] doc timeNL_NL_')" > TIP="Event ">started</span> study <span class="AFF_" > onClick="iaf('AFF_NL_EVTNL_treatmentNL_SPC_[before] doc > timeNL_NL_PRCNL_treatmentNL_SPC_C0087111NL_SPC_[Therapeutic > procedure]NL_SPC_[before] doc timeNL_NL_')" TIP="Event Procedure > ">treatment</span><span class="PRC"><sup>•</sup></span> of <span > class="AFF_" > onClick="iaf('AFF_NL_DRGNL_ThalomidNL_SPC_C0723668NL_SPC_[before] doc > timeNL_NL_')" TIP="Drug ">Thalomid</span><span > class="DRG"><sup>•</sup></span> <span class="AFF_" > onClick="iaf('AFF_NL_EVTNL_200mgNL_SPC_[before] doc timeNL_NL_')" > TIP="Event ">200mg</span><span class="UNK" > onClick="crf1()"><sup>1</sup></span> ( <span class="GNR_" > onClick="iaf('GNR_NL_TMXNL_daysNL_NL_')" TIP="Time ">days</span> 1 - > 21 ) , and <span class="AFF_" > onClick="iaf('AFF_NL_DRGNL_EpirubicinNL_SPC_C0014582NL_SPC_[before] > doc timeNL_NL_')" TIP="Drug ">Epirubicin</span><span > class="DRG"><sup>•</sup></span> , 20 mg / m2 ( <span > class="GNR_" onClick="iaf('GNR_NL_TMXNL_days 1 , 8NL_NL_')" TIP="Time > ">days 1 , 8</span> , and 15 ) on <span class="GNR_" > onClick="iaf('GNR_NL_TMXNL_06 / 07 / 02NL_SPC_[CONTAINS] > treatmentNL_NL_')" TIP="Time ">06 / 07 / 02</span> for the <span > class="AFF_" onClick="iaf('AFF_NL_EVTNL_treatmentNL_SPC_[before] doc > timeNL_SPC_06 / 07 / 02 > [CONTAINS]NL_NL_PRCNL_treatmentNL_SPC_C0087111NL_SPC_[Therapeutic > procedure]NL_SPC_[before] doc timeNL_NL_')" TIP="Event Procedure > ">treatment</span><span class="PRC"><sup>•</sup></span> of <span > class="AFF_" onClick="iaf('AFF_NL_DISNL_hepatocellular > carcinomaNL_SPC_C2239176NL_SPC_[Liver carcinoma]NL_SPC_[before] doc > timeNL_NL_')" TIP="Disorder ">hepatocellular </span><span > class="AFF_" onClick="iaf('AFF_NL_DISNL_hepatocellular > carcinomaNL_SPC_C2239176NL_SPC_[Liver carcinoma]NL_SPC_[before] doc > timeNL_NL_EVTNL_carcinomaNL_SPC_[before] doc timeNL_NL_')" > TIP="Disorder Event ">carcinoma</span><span class="DIS" > onClick="crf1()"><sup>1</sup></span> . > <br> > > </p> > > </div> > > <div id="ia"> Annotation Information </div> <script > type="text/javascript"> > function iaf(txt) { > var aff=txt.replace( /AFF_/g,"<br><h3>Affirmed</h3>" ); > var neg=aff.replace( /NEG_/g,"<br><h3>Negated</h3>" ); > var unc=neg.replace( /UNC_/g,"<br><h3>Uncertain</h3>" ); > var unn=unc.replace( /UNN_/g,"<br><h3>Uncertain, Negated</h3>" ); > var ant=unn.replace( /ANT/g,"<b>Anatomical Site</b>" ); > var dis=ant.replace( /DIS/g,"<b>Disease/ Disorder</b>" ); > var fnd=dis.replace( /FND/g,"<b>Sign/ Symptom</b>" ); > var prc=fnd.replace( /PRC/g,"<b>Procedure</b>" ); > var drg=prc.replace( /DRG/g,"<b>Medication</b>" ); > var evt=drg.replace( /EVT/g,"<b>Event</b>" ); > var tmx=evt.replace( /TMX/g,"<b>Time</b>" ); > var unk=tmx.replace( /UNK/g,"<b>Unknown</b>" ); > var spc=unk.replace( > /SPC_/g," " ); > var prf1=spc.replace( /\[/g,"<i>" ); > var prf2=prf1.replace( /\]/g,"</i>" ); > var nl=prf2.replace( /NL_/g,"<br>" ); > document.getElementById("ia").innerHTML = nl; > } > function crf1() { > document.getElementById("ia").innerHTML = "<br><h3>Coreference > Chain</h3>study treatment of Thalomid 200mg<br>the treatment of > hepatocellular carcinoma"; > } > </script></body> > </html> > > > > ///////////////////////////////////////////////////// css, copy into > file named ctakes.pretty.css in same directory as > html ///////////////////////////////////////////////// > > > > .GNR_ { > position: relative; > display: inline-block gray; > border-bottom: 0.10em solid gray; > } > > .AFF_ { > position: relative; > display: inline-block green; > border-bottom: 0.15em solid green; > } > > .UNC_ { > position: relative; > display: inline-block gold; > border-bottom: 0.16em dotted gold; > } > > .NEG_ { > position: relative; > display: inline-block red; > border-bottom: 0.16em dashed red; > } > > .UNN_ { > position: relative; > display: inline-block orange; > border-bottom: 0.16em dashed orange; > } > > .FND { > color: magenta; > } > > .DIS { > color: black; > } > > .DRG { > color: red; > } > > .PRC { > color: blue; > } > > .ANT { > color: gray; > } > > .UNK { > color: gray; > } > > [TIP] { > position: relative; > z-index: 2; > cursor: pointer; > } > [TIP]::before, > [TIP]::after { > visibility: hidden; > -ms-filter: "progid:DXImageTransform.Microsoft.Alpha(Opacity=0)"; > filter: progid: DXImageTransform.Microsoft.Alpha(Opacity=0); > opacity: 0; > pointer-events: none; > } > [TIP]::before { > position: absolute; > bottom: 0%; > left: 100%; > margin-bottom: 5px; > padding: 7px; > -webkit-border-radius: 3px; > -moz-border-radius: 3px; > border-radius: 3px; > background-color: #000; > background-color: hsla(0, 0%, 20%, 0.9); > color: #fff; > content: attr(TIP); > text-align: center; > font-size: 14px; > line-height: 1.2; > } > [TIP]:hover::before, > [TIP]:hover::after { > visibility: visible; > -ms-filter: "progid:DXImageTransform.Microsoft.Alpha(Opacity=100)"; > filter: progid: DXImageTransform.Microsoft.Alpha(Opacity=100); > opacity: 1; > } > > div#ia { > position: fixed; > top: 0; > right: 0; > width: 20%; > height: 100%; > padding: 10px; > overflow: auto; > background-color: lightgray; > } > > div#content { > width: 79%; > height: 100%; > padding: 10px; > overflow: auto; > } > > > > > > > > > > -----Original Message----- > From: Gandhi Rajan Natarajan [mailto:gandhi.natara...@arisglobal.com] > Sent: Wednesday, September 27, 2017 4:40 AM > To: dev@ctakes.apache.org > Subject: RE: Enabling drugner pipeline and identifying dates > [EXTERNAL] [SUSPICIOUS] > > Hi Sean, > > Sorry for the delayed response as I was out of office due to illness. > If I don't add BackwardsTimeAnnotator, I don't see any error related > to isTraining param. But still couldn't get the superscript co- > reference working. Please note that I am using the latest 4.0.1 jars. > The piper file and console log messages are as follows: > > PIPER FILE: > // Advanced Tokenization: Regex sectionization, BIO Sentence Detector > (lumper), Paragraphs,Lists load AdvancedTokenizerPipeline.piper add > ContextDependentTokenizerAnnotator > add POSTagger > // Chunkers > load ChunkerSubPipe.piper > // Default fast dictionary lookup > load DictionarySubPipe.piper > add org.apache.ctakes.drugner.ae.DrugMentionAnnotator > // Cleartk Entity Attributes > load AttributeCleartkSubPipe.piper > // Relations > load RelationSubPipe.piper > // Temporal > load TemporalSubPipe.piper > // Coreferences > load CorefSubPipe.piper > //add org.apache.ctakes.temporal.ae.BackwardsTimeAnnotator > // Html output > add pretty.html.HtmlTextWriter > // XMl writer > add FileTreeXmiWriter > > CONSOLE LOG: > > 22 Sep 2017 13:59:44 INFO ClearNLPSemanticRoleLabelerAE - Finished > initializing > 22 Sep 2017 13:59:44 INFO CleartkAnalysisEngine - Starting > initializing for Assigning Attributes > 22 Sep 2017 13:59:46 INFO CleartkAnalysisEngine - Finished > initializing > 22 Sep 2017 13:59:46 INFO ModifierExtractorAnnotator - Starting > initializing > 22 Sep 2017 13:59:46 INFO ModifierExtractorAnnotator - Finished > initializing > 22 Sep 2017 13:59:46 INFO DegreeOfRelationExtractorAnnotator - > Starting initializing > 22 Sep 2017 13:59:46 INFO DegreeOfRelationExtractorAnnotator - > Finished initializing > 22 Sep 2017 13:59:46 INFO LocationOfRelationExtractorAnnotator - > Starting initializing > 22 Sep 2017 13:59:46 INFO LocationOfRelationExtractorAnnotator - > Finished initializing > 22 Sep 2017 13:59:46 INFO BackwardsTimeAnnotator - Starting > initializing > 22 Sep 2017 13:59:46 INFO BackwardsTimeAnnotator - Finished > initializing > 22 Sep 2017 13:59:46 INFO DocTimeRelAnnotator - Starting > initializing > 22 Sep 2017 13:59:48 INFO DocTimeRelAnnotator - Finished > initializing > 22 Sep 2017 13:59:48 INFO EventTimeRelationAnnotator - Starting > initializing > 22 Sep 2017 13:59:49 INFO EventTimeRelationAnnotator - Finished > initializing > 22 Sep 2017 13:59:49 INFO EventEventRelationAnnotator - Starting > initializing > 22 Sep 2017 13:59:51 INFO EventEventRelationAnnotator - Finished > initializing > 22 Sep 2017 13:59:51 INFO ConstituencyParser - Initializing > parser... > 22 Sep 2017 13:59:54 INFO RegexSectionizer - Annotating Sections ... > 22 Sep 2017 13:59:55 INFO RegexSectionizer - Finished processing > 22 Sep 2017 13:59:55 INFO SentenceDetectorAnnotatorBIO - Starting > processing ... > 22 Sep 2017 13:59:55 INFO SentenceDetectorAnnotatorBIO - Finished > processing > 22 Sep 2017 13:59:55 INFO ParagraphAnnotator - Annotating Paragraphs > ... > 22 Sep 2017 13:59:55 INFO ParagraphAnnotator - Finished processing > 22 Sep 2017 13:59:55 INFO ParagraphSentenceFixer - Adjusting > Sentences overlapping Paragraphs ... > 22 Sep 2017 13:59:55 INFO ParagraphSentenceFixer - Finished > Processing > 22 Sep 2017 13:59:55 INFO ListAnnotator - Annotating Lists ... > 22 Sep 2017 13:59:55 INFO ListAnnotator - Finished processing > 22 Sep 2017 13:59:55 INFO ListSentenceFixer - Adjusting Sentences > overlapping Lists ... > 22 Sep 2017 13:59:55 INFO ListSentenceFixer - Finished Processing > 22 Sep 2017 13:59:55 INFO TokenizerAnnotatorPTB - process(JCas) in > org.apache.ctakes.core.ae.TokenizerAnnotatorPTB > 22 Sep 2017 13:59:55 INFO ContextDependentTokenizerAnnotator - > process(JCas) > 22 Sep 2017 13:59:55 INFO POSTagger - process(JCas) > 22 Sep 2017 13:59:55 INFO Chunker - process(JCas) > 22 Sep 2017 13:59:55 INFO ChunkAdjuster - process(JCas) > 22 Sep 2017 13:59:55 INFO ChunkAdjuster - process(JCas) > 22 Sep 2017 13:59:55 INFO AbstractJCasTermAnnotator - Finding Named > Entities ... > 22 Sep 2017 13:59:55 INFO AbstractJCasTermAnnotator - Finished > processing > 22 Sep 2017 13:59:55 INFO DrugMentionAnnotator - process dev (JCas) > 22 Sep 2017 13:59:55 INFO DrugMentionAnnotator - -1 > 22 Sep 2017 13:59:55 INFO DrugMentionAnnotator - -1 > 22 Sep 2017 13:59:55 INFO DrugMentionAnnotator - -1 > 22 Sep 2017 13:59:55 INFO DrugMentionAnnotator - -1 > 22 Sep 2017 13:59:55 INFO DrugMentionAnnotator - -1 > 22 Sep 2017 13:59:55 INFO DrugMentionAnnotator - -1 > 22 Sep 2017 13:59:55 INFO DrugMentionAnnotator - -1 > 22 Sep 2017 13:59:55 INFO DrugMentionAnnotator - -1 > 22 Sep 2017 13:59:55 INFO DrugMentionAnnotator - -1 > 22 Sep 2017 13:59:55 INFO DrugMentionAnnotator - -1 > 22 Sep 2017 13:59:55 INFO DrugMentionAnnotator - -1 > 22 Sep 2017 13:59:55 INFO DrugMentionAnnotator - -1 > 22 Sep 2017 13:59:55 INFO DrugMentionAnnotator - -1 > 22 Sep 2017 13:59:55 INFO DrugMentionAnnotator - -1 > 22 Sep 2017 13:59:55 INFO DrugMentionAnnotator - -1 > 22 Sep 2017 13:59:55 INFO DrugMentionAnnotator - -1 > 22 Sep 2017 13:59:55 INFO DrugMentionAnnotator - -1 > 22 Sep 2017 13:59:56 INFO DrugMentionAnnotator - -1 > 22 Sep 2017 13:59:56 INFO DrugMentionAnnotator - -1 > 22 Sep 2017 13:59:56 INFO DrugMentionAnnotator - -1 > 22 Sep 2017 13:59:56 INFO ClearNLPDependencyParserAE - Dependency > parser starting with thread:pool-2-thread-1 > 22 Sep 2017 13:59:56 INFO ClearNLPDependencyParserAE - Dependency > parser ending with thread:pool-2-thread-1 > 22 Sep 2017 13:59:56 INFO ClearNLPSemanticRoleLabelerAE - Starting > processing ... > 22 Sep 2017 13:59:56 INFO ClearNLPSemanticRoleLabelerAE - Finished > processing > 22 Sep 2017 13:59:56 INFO CleartkAnalysisEngine - Assigning > Attributes ... > 22 Sep 2017 13:59:56 INFO CleartkAnalysisEngine - Finished Assigning > Attributes > 22 Sep 2017 13:59:56 INFO ModifierExtractorAnnotator - Starting > processing ... > 22 Sep 2017 13:59:56 INFO ModifierExtractorAnnotator - Finished > processing > 22 Sep 2017 13:59:56 INFO DegreeOfRelationExtractorAnnotator - > Starting processing ... > 22 Sep 2017 13:59:56 INFO DegreeOfRelationExtractorAnnotator - > Finished processing > 22 Sep 2017 13:59:56 INFO LocationOfRelationExtractorAnnotator - > Starting processing ... > 22 Sep 2017 13:59:57 INFO LocationOfRelationExtractorAnnotator - > Finished processing > 22 Sep 2017 13:59:57 INFO BackwardsTimeAnnotator - Starting > processing ... > 22 Sep 2017 13:59:57 INFO BackwardsTimeAnnotator - Finished > processing > 22 Sep 2017 13:59:57 INFO DocTimeRelAnnotator - Starting processing > ... > 22 Sep 2017 13:59:58 INFO DocTimeRelAnnotator - Finished processing > 22 Sep 2017 13:59:58 INFO EventTimeRelationAnnotator - Starting > processing ... > 22 Sep 2017 13:59:59 INFO EventTimeRelationAnnotator - Finished > processing > 22 Sep 2017 13:59:59 INFO EventEventRelationAnnotator - Starting > processing ... > 22 Sep 2017 13:59:59 INFO EventEventRelationAnnotator - Finished > processing > 22 Sep 2017 13:59:59 INFO MaxentParserWrapper - Started processing: > test > 22 Sep 2017 14:00:02 INFO MaxentParserWrapper - Done parsing: test > 22 Sep 2017 14:00:03 INFO MentionClusterCoreferenceAnnotator - > Finding Coreferences ... > 22 Sep 2017 14:00:03 INFO MentionClusterCoreferenceAnnotator - > Finished. > 22 Sep 2017 14:00:03 INFO HtmlTextWriter - Writing HTML to > D:\Gandhi\ArisG\cTAKES\apache-ctakes- > 4.0.0\bin_old\test_output\test.txt.pretty.html ... > 22 Sep 2017 14:00:03 INFO HtmlTextWriter - Finished Writing > 22 Sep 2017 14:00:03 INFO FileTreeXmiWriter - Writing XMI to > D:\Gandhi\ArisG\cTAKES\apache-ctakes- > 4.0.0\bin_old\test_output\test.txt.xmi ... > Sep 22, 2017 2:00:03 PM org.apache.uima.util.MessageReport > decreasingWithTrace(51) > WARNING: Message count: 1; Feature > org.apache.ctakes.typesystem.type.textsem.Predicate:relations is > marked multipleReferencesAllowed=false, but it has multiple > references. These will be serialized in duplicate. Message count > indicates messages skipped to avoid potential flooding. Set FINE > logging level for stacktrace. > Sep 22, 2017 2:00:03 PM org.apache.uima.util.MessageReport > decreasingWithTrace(51) > WARNING: Message count: 2; Feature > org.apache.ctakes.typesystem.type.textsem.Predicate:relations is > marked multipleReferencesAllowed=false, but it has multiple > references. These will be serialized in duplicate. Message count > indicates messages skipped to avoid potential flooding. Set FINE > logging level for stacktrace. > Sep 22, 2017 2:00:03 PM org.apache.uima.util.MessageReport > decreasingWithTrace(51) > WARNING: Message count: 4; Feature > org.apache.ctakes.typesystem.type.textsem.Predicate:relations is > marked multipleReferencesAllowed=false, but it has multiple > references. These will be serialized in duplicate. Message count > indicates messages skipped to avoid potential flooding. Set FINE > logging level for stacktrace. > Sep 22, 2017 2:00:03 PM org.apache.uima.util.MessageReport > decreasingWithTrace(51) > WARNING: Message count: 8; Feature > org.apache.ctakes.typesystem.type.textsem.Predicate:relations is > marked multipleReferencesAllowed=false, but it has multiple > references. These will be serialized in duplicate. Message count > indicates messages skipped to avoid potential flooding. Set FINE > logging level for stacktrace. > Sep 22, 2017 2:00:03 PM org.apache.uima.util.MessageReport > decreasingWithTrace(51) > WARNING: Message count: 16; Feature > org.apache.ctakes.typesystem.type.textsem.Predicate:relations is > marked multipleReferencesAllowed=false, but it has multiple > references. These will be serialized in duplicate. Message count > indicates messages skipped to avoid potential flooding. Set FINE > logging level for stacktrace. > Sep 22, 2017 2:00:03 PM org.apache.uima.util.MessageReport > decreasingWithTrace(51) > WARNING: Message count: 32; Feature > org.apache.ctakes.typesystem.type.textsem.Predicate:relations is > marked multipleReferencesAllowed=false, but it has multiple > references. These will be serialized in duplicate. Message count > indicates messages skipped to avoid potential flooding. Set FINE > logging level for stacktrace. > 22 Sep 2017 14:00:03 INFO FileTreeXmiWriter - Finished Writing > > > Sean, we have also made some code changes in MeasurementFSM.java to > identify certain measurements like '20 mg/m2' which was not > identified out of the box. Should we send the code changes to you so > that you can consider the same to be productized ? Please advise. > > Regards, > Gandhi > > > -----Original Message----- > From: Finan, Sean [mailto:sean.fi...@childrens.harvard.edu] > Sent: Friday, September 22, 2017 6:54 PM > To: dev@ctakes.apache.org > Subject: RE: Enabling drugner pipeline and identifying dates > [EXTERNAL] [SUSPICIOUS] > > Hi Gandhi, > > You don't need to add BackwardsTimeAnnotator to your piper. It is > added by the TemporalSubPipe.piper. The error that you are seeing > regarding training is very strange, but you can try adding this line > to the top of the file: > set isTraining=false > > Can you run a sample file with your piper and send me the log > statements? It might help me figure out what is going on. > > > > > is there any doc or guide on how to start writing our own > > annotator. > There are two example annotators in the ctakes-examples project under > the ae/ directory. You can look at those, but I recommend that you > look at some information on Uimafit, which can be used to create new > annotators: > https://urldefense.proofpoint.com/v2/url?u=https-3A__uima.apache.org_ > d_uimafit- > 2D2.1.0_tools.uimafit.book.pdf&d=DwIFAg&c=qS4goWBT7poplM69zy_3xhKwEW1 > 4JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=OlZ5 > SUTgU94HjHE8vZDkXv8hjaaa9qEpAlfZjU52Ymk&s=0rIPMY5osSxL4J9gMymmv0bHsBX > imd0yb1FmUp4uT-A&e= > An introduction to creating Analysis Engines (Annotators) is on page > 5. > > Coding style is individualistic, but below is a rubberstamp that I > use to get started: > > import org.apache.ctakes.core.pipeline.PipeBitInfo; > import org.apache.log4j.Logger; > import org.apache.uima.UimaContext; > import > org.apache.uima.analysis_engine.AnalysisEngineProcessException; > import org.apache.uima.fit.component.JCasAnnotator_ImplBase; > import org.apache.uima.jcas.JCas; > import org.apache.uima.resource.ResourceInitializationException; > > /** > * @author SPF , chip-nlp > * @version %I% > * @since 9/22/2017 > */ > @PipeBitInfo( > name = "Template", > description = "For Example.", role = PipeBitInfo.Role.ANNOTATOR > ) > final public class Template extends JCasAnnotator_ImplBase { > > static private final Logger LOGGER = Logger.getLogger( "Template" > ); > > /** > * {@inheritDoc} > */ > @Override > public void initialize( final UimaContext context ) throws > ResourceInitializationException { > // Always call the super first > super.initialize( context ); > // place AE initialization code here > } > > /** > * {@inheritDoc} > */ > @Override > public void process( final JCas jCas ) throws > AnalysisEngineProcessException { > LOGGER.info( "Processing ..." ); > // Place AE processing code here > LOGGER.info( "Finished." ); > } > } > > > > If you use IntelliJ as your ide you can create a file template with > these parameters: > > #if (${PACKAGE_NAME} && ${PACKAGE_NAME} != "")package > ${PACKAGE_NAME};#end > > import org.apache.ctakes.core.pipeline.PipeBitInfo; > import org.apache.log4j.Logger; > import org.apache.uima.UimaContext; > import > org.apache.uima.analysis_engine.AnalysisEngineProcessException; > import org.apache.uima.fit.component.JCasAnnotator_ImplBase; > import org.apache.uima.jcas.JCas; > import org.apache.uima.resource.ResourceInitializationException; > > #parse("File Header.java") > @PipeBitInfo( > name = "${NAME}", > #if ( ${PROJECT_NAME} != "")description = "For > ${PROJECT_NAME}.",#end > role = PipeBitInfo.Role.ANNOTATOR > ) > final public class ${NAME} extends JCasAnnotator_ImplBase { > > static private final Logger LOGGER = Logger.getLogger( "${NAME}" > ); > > /** > * {@inheritDoc} > */ > @Override > public void initialize( final UimaContext context ) throws > ResourceInitializationException { > // Always call the super first > super.initialize( context ); > // place AE initialization code here > } > > /** > * {@inheritDoc} > */ > @Override > public void process( final JCas jCas ) throws > AnalysisEngineProcessException { > LOGGER.info( "Processing ..." ); > // Place AE processing code here > LOGGER.info( "Finished." ); > } > } > > > > > > -----Original Message----- > From: Gandhi Rajan Natarajan [mailto:gandhi.natara...@arisglobal.com] > Sent: Friday, September 22, 2017 2:23 AM > To: dev@ctakes.apache.org > Subject: RE: Enabling drugner pipeline and identifying dates > [EXTERNAL] [SUSPICIOUS] > > Hi Sean, > > Thanks again for the detailed response. > > I still couldn't manage to get superscript-1 co-reference in piper > GUI. Also I'm not able to use "BackwardsTimeAnnotator" in piper GUI > as it gives me the below error: > > org.apache.uima.resource.ResourceInitializationException: > Initialization of annotator class > "org.apache.ctakes.temporal.ae.BackwardsTimeAnnotator" > failed. (Descriptor: <unknown>) > at > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.ini > tializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:271) > at > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.ini > tialize(PrimitiveAnalysisEngine_impl.java:170) > Caused by: java.lang.IllegalArgumentException: Please specify > PARAM_IS_TRAINING - unable to infer it from context > at > org.cleartk.ml.CleartkAnnotator.initialize(CleartkAnnotator.java:109) > > Somewhere in old mails it's mentioned that it's because of missing > dependencies so I tried adding ClearTkAnnotator with no luck yet. My > piper file is as follows: > > load AdvancedTokenizerPipeline.piper > add ContextDependentTokenizerAnnotator > add POSTagger > load ChunkerSubPipe.piper > load DictionarySubPipe.piper > add org.apache.ctakes.drugner.ae.DrugMentionAnnotator > load AttributeCleartkSubPipe.piper > load RelationSubPipe.piper > load TemporalSubPipe.piper > load CorefSubPipe.piper > add org.apache.ctakes.temporal.ae.BackwardsTimeAnnotator > add pretty.html.HtmlTextWriter > add FileTreeXmiWriter > > Any suggestion on this? Also I'm using all the latest 4.0.1 cTAKES > Jars. Regarding the identification of Names, will dig deep on what > you have mentioned. > > Sorry to ask this as you already mentioned that there are no detailed > docs for cTAKES. But is there any doc or guide on how to start > writing our own annotator if required? It not, Is there any simple > annotator that you would suggest us to look into to get better > understanding on annotators for us to proceed further. Thanks in > advance. > > Regards, > Gandhi > > > -----Original Message----- > From: Finan, Sean [mailto:sean.fi...@childrens.harvard.edu] > Sent: Thursday, September 21, 2017 7:59 AM > To: dev@ctakes.apache.org > Subject: RE: Enabling drugner pipeline and identifying dates > [EXTERNAL] [SUSPICIOUS] > > Hi Gandhi, > > > > > We guess we are missing out on something as we could not find co- > > references for "200mg". Should we add anymore piper for this? > The piper commands that I sent has everything to obtain > coreferences. I use it regularly - it is what I used on your example > sentence to get the coreferences that I mentioned. > > > > > Also the change mentioned in the thread ... > That is a very old thread and I don't think that it applies to what > you are trying to do. > > > > > We also have a requirement to identify the patient names and sex > As James said, ctakes isn't really meant to do this. Ctakes is > catered toward extracting clinical data, and to this point names have > not fallen into that category. It is more a task for general > nlp. There is an opennlp model that can identify names and a few > others (I used to see names using GATE). ctakes has wrapped opennlp > for other tasks and you should be able to do the same to adapt an > engine for names into ctakes. > > > > > cTAKES is unable to identify the dates like 20Aug02 or 20/Aug/02 or > > 06 > > / 07 / 02 or 27Aug2002 > As Chen mentioned, the BackwardTimeAnnotator module uses an ML model > trained on gold data. It isn't perfect. You can add another time > annotator on top of this to get some of the more simply formatted > date mentions - there are a lot of them out there. Personally I have > used jchronic as it can be easily tweaked to recognize medically- > relevant temporal expressions relating to surgery, pharmacology, etc. > > Sean > > > -----Original Message----- > From: Finan, Sean [mailto:sean.fi...@childrens.harvard.edu] > Sent: Wednesday, September 20, 2017 8:50 AM > To: dev@ctakes.apache.org > Subject: RE: Enabling drugner pipeline and identifying dates > [EXTERNAL] [SUSPICIOUS] > > Hi Gandhi, > > I don't have time to go through all of this right now, but I will try > to get to it soon. > > Make sure that you are running the latest version in trunk. > > Sean > > -----Original Message----- > From: Gandhi Rajan Natarajan [mailto:gandhi.natara...@arisglobal.com] > Sent: Wednesday, September 20, 2017 7:03 AM > To: dev@ctakes.apache.org > Subject: RE: Enabling drugner pipeline and identifying dates > [EXTERNAL] > > Hi, Could someone help me out on the below queries please? > > Regards, > Gandhi > > -----Original Message----- > From: Gandhi Rajan Natarajan [mailto:gandhi.natara...@arisglobal.com] > Sent: Tuesday, September 19, 2017 8:51 PM > To: dev@ctakes.apache.org > Subject: RE: Enabling drugner pipeline and identifying dates > [EXTERNAL] > > Hi Sean, > > Thanks again for the detailed and prompt response. We were able to > run the piper GUI as per your advice. But in the output (The patient > started study treatment of Thalomid 200mg ( days 1 - 21 ) , and > Epirubicin ,20 mg / m2 ( days 1 , 8 , and 15 ) on 06 / 07 / 02 for > the treatment of hepatocellular carcinoma.), we were not able to find > superscript-1 as you mentioned earlier but could find superscript-2, > 3 etc. We guess we are missing out on something as we could not find > co-references for "200mg". Should we add anymore piper for this? > > Also the change mentioned in the thread - https://urldefense.proofpoi > nt.com/v2/url?u=http-3A__mail-2Darchives.apache.org_mod- > 5Fmbox_ctakes-2Duser_201403.mbox_-253CCAL6WimrJ-5Fmm1- > 2BXyggBZv62diYuWP0ScA9VEV8mNHGWe4hSNHQg-40mail.gmail.com- > 253E&d=DwIFAg&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67Gvl > GZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=JoUDRZHu91gGMslwknPzTQC_UG2LEB > LyOfXR3ikwOL0&s=GzhvIkBu4cgyzYN9n6VLe2rz4sJhJzMxDcWyB0BkqAc&e= is > required for the drug-ner module to identify drug-ner annotations. > > 1) We also have a requirement to identify the patient names and sex > available in narrative texts. Please let us know how to achieve the > same as its not identifying the proper nouns and the relationship > with the patient? > Eg. "This male patient named Tom Hardy aged 35 years is participating > in a Non-IND study" > > 2) cTAKES is unable to identify the dates like 20Aug02 or 20/Aug/02 > or 06 / 07 / 02 or 27Aug2002 as in the below example. Please let us > know how to enhance the system to identify such date patterns. > E.g " On 20Aug02, the investigator noted that this patient was > suffering worsening fatigue and got tired getting out of his chair" > > Regards, > Gandhi > > > -----Original Message----- > From: Finan, Sean [mailto:sean.fi...@childrens.harvard.edu] > Sent: Monday, September 18, 2017 10:02 PM > To: dev@ctakes.apache.org > Subject: RE: Enabling drugner pipeline and identifying dates > [EXTERNAL] > > Hi Gandhi, > > > > > So in this case will be able to see drug attributes in the output > > XML? > As long as you have the DrugMentionAnnotator in your pipeline you > should be able to find drug attributes in the xml output file. > > > > > we also saw some code changes needs to be done to use drug-ner > > module. Is it still valid? > As far as I know there aren't any necessary code changes to get drug > ner running. However, I do not normally use drugner so I can't say > for certain. > > > > > Also you mentioned that the drun-ner module is out of date > It can still be used and will produce annotations. All that I meant > was that there may not be many people out there using it. It is not > part of the default pipeline. > > > You also mentioned that when you run the sentence, the date was > identified. Where and how exactly did you ran it so that we can check > the same? > I run the following in a piper file because I am interested in a lot > of modules (I added drugner just for you): > > // Advanced Tokenization: Regex sectionization, BIO Sentence Detector > (lumper), Paragraphs, Lists load AdvancedTokenizerPipeline.piper add > ContextDependentTokenizerAnnotator > add POSTagger > // Chunkers > load ChunkerSubPipe.piper > // Default fast dictionary lookup > load DictionarySubPipe.piper > add org.apache.ctakes.drugner.ae.DrugMentionAnnotator > // Cleartk Entity Attributes > load AttributeCleartkSubPipe.piper > // Relations > load RelationSubPipe.piper > // Temporal > load TemporalSubPipe.piper > // Coreferences > load CorefSubPipe.piper > // Html output > add pretty.html.HtmlTextWriter > > For information on piper files, see https://urldefense.proofpoint.com > /v2/url?u=https-3A__cwiki.apache.org_confluence_display_CTAKES_Piper- > 2BFiles&d=DwIFAg&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67 > GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=JoUDRZHu91gGMslwknPzTQC_UG2 > LEBLyOfXR3ikwOL0&s=9ueuHYwEywok8byBXEkVjmTWiChmaIY3ryB4Pi6ajRo&e= > I run it in my IDE with: > org.apache.ctakes.core.pipeline.PiperFileRunner -Xmx3G -p > <FileAsAbove>.piper -i org/apache/ctakes/examples/notes -o > <OutputDir> --user <MyUmlsUser> --pass <MyUmlsPass> You can run it by > command line by substituting > "org.apache.ctakes.core.pipeline.PiperFileRunner -Xmx3G" with > "bin/runPiperFile". > You can also run it through a ctakes 4.01 (trunk) gui. See https://u > rldefense.proofpoint.com/v2/url?u=https- > 3A__cwiki.apache.org_confluence_display_CTAKES_Piper-2BFile- > 2BSubmitter- > 2BGUI&d=DwIFAg&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67Gv > lGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=JoUDRZHu91gGMslwknPzTQC_UG2LE > BLyOfXR3ikwOL0&s=VWIrXrfA2dZ8KHOdoizJo-nTx7nPSy4GDOZ7IxQteIQ&e= > > > > > I'm not able to see any clickable option in HTML output > You must have the HtmlTextWriter at the end of your pipeline to > produce html files. To keep the xml file output, place "add > FileTreeXmiWriter" at the end of the piper. > > > > > Apologizes for too many > No worries, we are happy to have your interest! > > Sean > > > -----Original Message----- > From: Gandhi Rajan Natarajan [mailto:gandhi.natara...@arisglobal.com] > Sent: Saturday, September 16, 2017 7:01 AM > To: dev@ctakes.apache.org > Subject: RE: Enabling drugner pipeline and identifying dates > [EXTERNAL] > > Hi Sean, > > Thanks again for the prompt response. Appreciate your input on adding > DrugMentionAnnotator. Actually, we are relying on pretty printer > output just to understand the analysis. Our logic to extract > disorders and findings are based on the XML file generated by https:/ > /urldefense.proofpoint.com/v2/url?u=https- > 3A__github.com_healthnlp_examples_blob_master_ctakes-2Dtemporal- > 2Ddemo_src_main_java_org_apache_ctakes_web_client_servlet_DemoServlet > .java&d=DwIFAg&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67Gv > lGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=_MJKBj93YJdd5aa84dBvqtg6o- > BKBn7UcbfF660CEBI&s=g8UzBHRoOyn1hoRABKSC6EtPMvwOSSggviRmWCHKti4&e= > So in this case will be able to see drug attributes in the output > XML? > > In one of the old post (https://urldefense.proofpoint.com/v2/url?u=ht > tp-3A__mail-2Darchives.apache.org_mod-5Fmbox_ctakes- > 2Duser_201403.mbox_-253CCAL6WimrJ-5Fmm1- > 2BXyggBZv62diYuWP0ScA9VEV8mNHGWe4hSNHQg-40mail.gmail.com- > 253E&d=DwIFAg&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67Gvl > GZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=_MJKBj93YJdd5aa84dBvqtg6o- > BKBn7UcbfF660CEBI&s=iT_1UGR98APO80UaZsaCBHseMqF4M4PfItgokD27r5c&e= ) > we also saw some code changes needs to be done to use drug-ner > module. Is it still valid? Also you mentioned that the drun-ner > module is out of date which means it cannot be used or it may not > provide accurate analysis? Also what changes needs to be done to > bring it up to date so that we can try the same if you can assist? > > You also mentioned that when you run the sentence, the date was > identified. Where and how exactly did you ran it so that we can check > the same? Also regarding you explanation on corefernce, I'm not able > to see any clickable option in HTML output. So wanted to understand > how can we run and check that too. > > Apologizes for too many questions as we are just a week old in NLP > and cTAKES. Thanks in advance. > > Regards, > Gandhi > > This email and any files transmitted with it are confidential and > intended solely for the use of the individual or entity to whom they > are addressed. If you are not the named addressee you should not > disseminate, distribute or copy this e-mail. Please notify the sender > or system manager by email immediately if you have received this e- > mail by mistake and delete this e-mail from your system. If you are > not the intended recipient you are notified that disclosing, copying, > distributing or taking any action in reliance on the contents of this > information is strictly prohibited and against the law. > This email and any files transmitted with it are confidential and > intended solely for the use of the individual or entity to whom they > are addressed. If you are not the named addressee you should not > disseminate, distribute or copy this e-mail. Please notify the sender > or system manager by email immediately if you have received this e- > mail by mistake and delete this e-mail from your system. If you are > not the intended recipient you are notified that disclosing, copying, > distributing or taking any action in reliance on the contents of this > information is strictly prohibited and against the law. > This email and any files transmitted with it are confidential and > intended solely for the use of the individual or entity to whom they > are addressed. If you are not the named addressee you should not > disseminate, distribute or copy this e-mail. Please notify the sender > or system manager by email immediately if you have received this e- > mail by mistake and delete this e-mail from your system. If you are > not the intended recipient you are notified that disclosing, copying, > distributing or taking any action in reliance on the contents of this > information is strictly prohibited and against the law. > This email and any files transmitted with it are confidential and > intended solely for the use of the individual or entity to whom they > are addressed. If you are not the named addressee you should not > disseminate, distribute or copy this e-mail. Please notify the sender > or system manager by email immediately if you have received this e- > mail by mistake and delete this e-mail from your system. If you are > not the intended recipient you are notified that disclosing, copying, > distributing or taking any action in reliance on the contents of this > information is strictly prohibited and against the law. > This email and any files transmitted with it are confidential and > intended solely for the use of the individual or entity to whom they > are addressed. If you are not the named addressee you should not > disseminate, distribute or copy this e-mail. Please notify the sender > or system manager by email immediately if you have received this e- > mail by mistake and delete this e-mail from your system. If you are > not the intended recipient you are notified that disclosing, copying, > distributing or taking any action in reliance on the contents of this > information is strictly prohibited and against the law. > > This email and any files transmitted with it are confidential and > intended solely for the use of the individual or entity to whom they > are addressed. If you are not the named addressee you should not > disseminate, distribute or copy this e-mail. Please notify the sender > or system manager by email immediately if you have received this e- > mail by mistake and delete this e-mail from your system. If you are > not the intended recipient you are notified that disclosing, copying, > distributing or taking any action in reliance on the contents of this > information is strictly prohibited and against the law. > > This email and any files transmitted with it are confidential and > intended solely for the use of the individual or entity to whom they > are addressed. If you are not the named addressee you should not > disseminate, distribute or copy this e-mail. Please notify the sender > or system manager by email immediately if you have received this e- > mail by mistake and delete this e-mail from your system. If you are > not the intended recipient you are notified that disclosing, copying, > distributing or taking any action in reliance on the contents of this > information is strictly prohibited and against the law.
