Sean, Thank you. That exactly answered my question.
Melvin On Thu, Nov 2, 2017 at 10:01 AM, Finan, Sean < [email protected]> wrote: > Hi Melvin, > > To see how the sno_rx_16ab was created, please see: > https://cwiki.apache.org/confluence/display/CTAKES/Dictionary+Creator+GUI > > That page will also instruct you on making one that contains things like > "teary eyes", which comes from the MDR vocabulary and not snomed or > rxnorm. It is possible that I didn't include the MDR in my local umls rrf > creation. > > The gui uses code that is in the ctakes-gui project. > > > You can blacklist terms like "probably" and "yes" (which is "yes - > presence finding" in the umls). See this recent thread: > http://mail-archives.apache.org/mod_mbox/ctakes-dev/201710.mbox/% > [email protected]%3E > The comma-delimited semantic groups has been implemented. > > Sean > > > -----Original Message----- > From: Melvin Ma [mailto:[email protected]] > Sent: Thursday, November 02, 2017 12:46 PM > To: [email protected] > Subject: fast dictionary - [EXTERNAL] > > I am recently studying the fast dictionary code and behavior. I wonder how > was sno_rx_16ab.script originally constructed. I have not seen any code > converting UMLs data into "sno_rx_16ab.script" file (obviously I could > missed something). Is it simply a copy of UMLs tables? > > Specifically, I am puzzled by the following: > > 1> "Probably" was recognized as sympton using the default clinical > pipeline. > I could see the following line from sno_rx_16ab.script file: > INSERT INTO CUI_TERMS VALUES(332148,0,1,'probably','probably') > I am guessing somehow, we should eliminate it... (not sure about that). > Similary to "Probably", "Yes" > INSERT INTO CUI_TERMS VALUES(1298907,0,1,'yes','yes') > > 2> "teary eyes" is not captured. If I search in UMLs browser, I did get > return - > Teary eyes [A25737508/MDR/LLT/10043172] > Not sure why it is not included in the fast dictionary. > > > Thank you very much! > > Melvin >
