[INFO] Scanning for projects...
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Build Order:
[INFO]
[INFO] Apache cTAKES
[INFO] ctakes-gui-res
[INFO] Apache cTAKES Resources coreference
[INFO] Apache cTAKES Resources temporal
[INFO] Apache cTAKES Resources relation-extractor
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res
[INFO] Apache cTAKES Resources core
[INFO] Apache cTAKES common type system
[INFO] Apache cTAKES utils
[INFO] Apache cTAKES core
[INFO] Apache cTAKES dictionary lookup fast
[INFO] Apache cTAKES document preprocessor
[INFO] Apache cTAKES Resources lvg
[INFO] Apache cTAKES LVG lexical tools
[INFO] Apache cTAKES Resources ne-contexts
[INFO] Apache cTAKES named entity contexts
[INFO] Apache cTAKES Resources assertion
[INFO] Apache cTAKES Resources constituency-parser
[INFO] Apache cTAKES Constituency Parser
[INFO] Apache cTAKES Resources dependency-parser
[INFO] Apache cTAKES Resources pos-tagger
[INFO] Apache cTAKES part-of-speech tagger
[INFO] Apache cTAKES Dependency Parser
[INFO] Apache cTAKES context dependent tokenizer
[INFO] Apache cTAKES Resources ctakes-chunker-res
[INFO] Apache cTAKES chunker
[INFO] Apache cTAKES Assertion
[INFO] ctakes-clinical-pipeline-res
[INFO] Apache cTAKES ctakes-clinical-pipeline
[INFO] Apache cTAKES Relation Extractor
[INFO] Apache cTAKES Temporal Information Extraction
[INFO] Apache cTAKES CoReference Resolver
[INFO] ctakes-gui
[INFO] Apache cTAKES Resources dictionary-lookup
[INFO] Apache cTAKES dictionary lookup
[INFO] Apache cTAKES Resources drug-ner
[INFO] Apache cTAKES Drug NER
[INFO] Apache cTAKES Resources side-effect
[INFO] Apache cTAKES Side Effects
[INFO] Apache cTAKES Resources smoking-status
[INFO] Apache cTAKES Smoking Status
[INFO] Apache cTAKES Resources assertion-zoner
[INFO] Apache cTAKES Assertion's zoner
[INFO] ctakes-examples-res
[INFO] ctakes-examples
[INFO] Apache cTAKES Resources ctakes-ytex-res
[INFO] Apache cTAKES YTEX
[INFO] Apache cTAKES YTEX UIMA
[INFO] Apache cTAKES YTEX Web
[INFO] Apache cTAKES Distribution
[INFO] Apache cTAKES Regression-test
[INFO] Apache cTAKES template filler
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes ---
[INFO]
[INFO] --- maven-site-plugin:3.1:attach-descriptor (attach-descriptor) @ ctakes
---
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building ctakes-gui-res 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-gui-res
---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @
ctakes-gui-res ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 85 resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-gui-res
---
[INFO] No sources to compile
[INFO]
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @
ctakes-gui-res ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory
C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-gui-res\src\test\resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @
ctakes-gui-res ---
[INFO] Nothing to compile - all classes are up to date
[INFO]
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-gui-res ---
[INFO] Surefire report directory:
C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-gui-res\target\surefire-reports
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Results :
Tests run: 0, Failures: 0, Errors: 0, Skipped: 0
[INFO]
[INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ ctakes-gui-res ---
[INFO] Building jar:
C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-gui-res\target\ctakes-gui-res-4.0.1-SNAPSHOT.jar
[INFO]
[INFO] --- maven-site-plugin:3.1:attach-descriptor (attach-descriptor) @
ctakes-gui-res ---
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES Resources coreference 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @
ctakes-coreference-res ---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @
ctakes-coreference-res ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 53 resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @
ctakes-coreference-res ---
[INFO] No sources to compile
[INFO]
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @
ctakes-coreference-res ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory
C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-coreference-res\src\test\resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @
ctakes-coreference-res ---
[INFO] No sources to compile
[INFO]
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @
ctakes-coreference-res ---
[INFO] Surefire report directory:
C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-coreference-res\target\surefire-reports
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Results :
Tests run: 0, Failures: 0, Errors: 0, Skipped: 0
[INFO]
[INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ ctakes-coreference-res ---
[INFO] Building jar:
C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-coreference-res\target\ctakes-coreference-res-4.0.1-SNAPSHOT.jar
[INFO]
[INFO] --- maven-site-plugin:3.1:attach-descriptor (attach-descriptor) @
ctakes-coreference-res ---
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES Resources temporal 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @
ctakes-temporal-res ---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @
ctakes-temporal-res ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 24 resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @
ctakes-temporal-res ---
[INFO] No sources to compile
[INFO]
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @
ctakes-temporal-res ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory
C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-temporal-res\src\test\resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @
ctakes-temporal-res ---
[INFO] No sources to compile
[INFO]
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @
ctakes-temporal-res ---
[INFO] Surefire report directory:
C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-temporal-res\target\surefire-reports
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Results :
Tests run: 0, Failures: 0, Errors: 0, Skipped: 0
[INFO]
[INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ ctakes-temporal-res ---
[INFO] Building jar:
C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-temporal-res\target\ctakes-temporal-res-4.0.1-SNAPSHOT.jar
[INFO]
[INFO] --- maven-site-plugin:3.1:attach-descriptor (attach-descriptor) @
ctakes-temporal-res ---
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES Resources relation-extractor 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @
ctakes-relation-extractor-res ---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @
ctakes-relation-extractor-res ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 10 resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @
ctakes-relation-extractor-res ---
[INFO] No sources to compile
[INFO]
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @
ctakes-relation-extractor-res ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory
C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-relation-extractor-res\src\test\resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @
ctakes-relation-extractor-res ---
[INFO] No sources to compile
[INFO]
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @
ctakes-relation-extractor-res ---
[INFO] Surefire report directory:
C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-relation-extractor-res\target\surefire-reports
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Results :
Tests run: 0, Failures: 0, Errors: 0, Skipped: 0
[INFO]
[INFO] --- maven-jar-plugin:2.4:jar (default-jar) @
ctakes-relation-extractor-res ---
[INFO] Building jar:
C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-relation-extractor-res\target\ctakes-relation-extractor-res-4.0.1-SNAPSHOT.jar
[INFO]
[INFO] --- maven-site-plugin:3.1:attach-descriptor (attach-descriptor) @
ctakes-relation-extractor-res ---
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES Resources dictionary-lookup-fast-res
4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @
ctakes-dictionary-lookup-fast-res ---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @
ctakes-dictionary-lookup-fast-res ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 9 resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-dependency-plugin:2.8:unpack-dependencies
(unpack-dependencies-ide) @ ctakes-dictionary-lookup-fast-res ---
[INFO] ctakes-resources-sno_rx-4.0.0.jar already exists in destination.
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @
ctakes-dictionary-lookup-fast-res ---
[INFO] No sources to compile
[INFO]
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @
ctakes-dictionary-lookup-fast-res ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory
C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-dictionary-lookup-fast-res\src\test\resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @
ctakes-dictionary-lookup-fast-res ---
[INFO] No sources to compile
[INFO]
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @
ctakes-dictionary-lookup-fast-res ---
[INFO] Surefire report directory:
C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-dictionary-lookup-fast-res\target\surefire-reports
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Results :
Tests run: 0, Failures: 0, Errors: 0, Skipped: 0
[INFO]
[INFO] --- maven-jar-plugin:2.4:jar (default-jar) @
ctakes-dictionary-lookup-fast-res ---
[INFO] Building jar:
C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-dictionary-lookup-fast-res\target\ctakes-dictionary-lookup-fast-res-4.0.1-SNAPSHOT.jar
[INFO]
[INFO] --- maven-site-plugin:3.1:attach-descriptor (attach-descriptor) @
ctakes-dictionary-lookup-fast-res ---
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES Resources core 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @
ctakes-core-res ---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @
ctakes-core-res ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 24 resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @
ctakes-core-res ---
[INFO] Nothing to compile - all classes are up to date
[INFO]
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @
ctakes-core-res ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory
C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-core-res\src\test\resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @
ctakes-core-res ---
[INFO] Nothing to compile - all classes are up to date
[INFO]
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-core-res
---
[INFO] Surefire report directory:
C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-core-res\target\surefire-reports
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Results :
Tests run: 0, Failures: 0, Errors: 0, Skipped: 0
[INFO]
[INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ ctakes-core-res ---
[INFO] Building jar:
C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-core-res\target\ctakes-core-res-4.0.1-SNAPSHOT.jar
[INFO]
[INFO] --- maven-site-plugin:3.1:attach-descriptor (attach-descriptor) @
ctakes-core-res ---
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES common type system 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @
ctakes-type-system ---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @
ctakes-type-system ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 3 resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- jcasgen-maven-plugin:2.10.2:generate (default) @ ctakes-type-system
---
[INFO] JCasGen: Found descriptor
'C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-type-system\src\main\resources\org\apache\ctakes\typesystem\types\TypeSystem.xml'
[INFO] JCasGen: Limiting generation to descriptors in
'C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-type-system'
[INFO] JCasGen: Output going to
'C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-type-system\target\generated-sources\jcasgen'
[INFO] JCasGen: Reading the XML TAE descriptor, and creating types, for xml
input file
'C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-type-system\target\jcasgen\typesystem.xml'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.refsem.AnatomicalSite'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.refsem.AnatomicalSite_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Attribute'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.refsem.Attribute_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.refsem.BodyLaterality'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.refsem.BodyLaterality_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.BodySide'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.refsem.BodySide_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Course'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.refsem.Course_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Date'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Date_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Element'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.refsem.Element_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Entity'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.refsem.Entity_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Event'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.refsem.Event_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.refsem.EventProperties'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.refsem.EventProperties_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Lab'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Lab_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.refsem.LabDeltaFlag'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.refsem.LabDeltaFlag_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.refsem.LabReferenceRange'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.refsem.LabReferenceRange_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.LabValue'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.refsem.LabValue_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.refsem.Medication'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.refsem.Medication_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.refsem.MedicationDosage'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.refsem.MedicationDosage_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.refsem.MedicationDuration'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.refsem.MedicationDuration_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.refsem.MedicationForm'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.refsem.MedicationForm_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.refsem.MedicationFrequency'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.refsem.MedicationFrequency_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.refsem.MedicationRoute'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.refsem.MedicationRoute_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.refsem.MedicationStatusChange'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.refsem.MedicationStatusChange_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.refsem.MedicationStrength'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.refsem.MedicationStrength_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.refsem.OntologyConcept'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.refsem.OntologyConcept_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Procedure'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.refsem.Procedure_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.refsem.ProcedureDevice'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.refsem.ProcedureDevice_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.refsem.ProcedureMethod'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.refsem.ProcedureMethod_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Severity'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.refsem.Severity_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.refsem.SignSymptom'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.refsem.SignSymptom_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Time'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.refsem.Time_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.refsem.UmlsConcept'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.refsem.UmlsConcept_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.relation.Affects'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.Affects_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.AffectsTextRelation'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.AffectsTextRelation_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.AspectualTextRelation'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.AspectualTextRelation_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.AttributeRelation'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.AttributeRelation_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.BinaryTextRelation'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.BinaryTextRelation_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.CausesBringsAbout'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.CausesBringsAbout_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.CausesBringsAboutTextRelation'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.CausesBringsAboutTextRelation_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.CollectionTextRelation'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.CollectionTextRelation_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.CollectionTextRelationIdentifiedAnnotationRelation'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.CollectionTextRelationIdentifiedAnnotationRelation_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.ComplicatesDisrupts'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.ComplicatesDisrupts_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.ComplicatesDisruptsTextRelation'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.ComplicatesDisruptsTextRelation_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.Contraindicates'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.Contraindicates_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.ContraindicatesTextRelation'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.ContraindicatesTextRelation_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.CoreferenceRelation'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.CoreferenceRelation_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.DegreeOf'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.DegreeOf_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.DegreeOfTextRelation'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.DegreeOfTextRelation_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.Diagnoses'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.Diagnoses_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.DiagnosesTextRelation'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.DiagnosesTextRelation_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.ElementRelation'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.ElementRelation_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.Indicates'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.Indicates_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.IndicatesTextRelation'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.IndicatesTextRelation_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.IsIndicatedFor'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.IsIndicatedFor_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.IsIndicatedForTextRelation'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.IsIndicatedForTextRelation_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.LocationOf'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.LocationOf_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.LocationOfTextRelation'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.LocationOfTextRelation_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.ManagesTreats'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.ManagesTreats_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.ManagesTreatsTextRelation'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.ManagesTreatsTextRelation_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.ManifestationOf'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.ManifestationOf_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.ManifestationOfTextRelation'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.ManifestationOfTextRelation_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.Prevents'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.Prevents_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.PreventsTextRelation'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.PreventsTextRelation_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.Relation'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.Relation_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.RelationArgument'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.RelationArgument_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.ResultOf'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.ResultOf_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.ResultOfTextRelation'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.ResultOfTextRelation_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.TemporalRelation'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.TemporalRelation_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.TemporalTextRelation'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.TemporalTextRelation_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.UMLSRelation'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.relation.UMLSRelation_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.structured.Demographics'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.structured.Demographics_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.structured.DocumentClassification'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.structured.DocumentClassification_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.structured.DocumentID'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.structured.DocumentID_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.structured.DocumentIdPrefix'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.structured.DocumentIdPrefix_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.structured.DocumentPath'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.structured.DocumentPath_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.structured.Metadata'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.structured.Metadata_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.structured.SourceData'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.structured.SourceData_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.ADJP'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.ADJP_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.ADVP'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.ADVP_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.BaseToken'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.syntax.BaseToken_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.CONJP'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.syntax.CONJP_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.Chunk'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.syntax.Chunk_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.syntax.ContractionToken'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.syntax.ContractionToken_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.INTJ'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.INTJ_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.LST'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.LST_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.Lemma'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.syntax.Lemma_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.NP'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.NP_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.syntax.NewlineToken'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.syntax.NewlineToken_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.NumToken'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.syntax.NumToken_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.O'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.O_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.PP'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.PP_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.PRT'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.PRT_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.syntax.PunctuationToken'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.syntax.PunctuationToken_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.SBAR'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.SBAR_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.syntax.StanfordDependency'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.syntax.StanfordDependency_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.syntax.SymbolToken'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.syntax.SymbolToken_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.syntax.TerminalTreebankNode'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.syntax.TerminalTreebankNode_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.syntax.TopTreebankNode'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.syntax.TopTreebankNode_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.syntax.TreebankNode'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.syntax.TreebankNode_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.UCP'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.UCP_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.VP'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.VP_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.WordToken'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.syntax.WordToken_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.BodyLateralityModifier'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.BodyLateralityModifier_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.BodySideModifier'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.BodySideModifier_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.ConditionalModifier'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.ConditionalModifier_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.ContextAnnotation'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.ContextAnnotation_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.CourseModifier'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.CourseModifier_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.DateAnnotation'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.DateAnnotation_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.EntityMention'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.EntityMention_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.EventMention'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.EventMention_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.FractionAnnotation'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.FractionAnnotation_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.GenericModifier'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.GenericModifier_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.HistoryOfModifier'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.HistoryOfModifier_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.LabDeltaFlagModifier'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.LabDeltaFlagModifier_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.LabEstimatedModifier'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.LabEstimatedModifier_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.LabInterpretationModifier'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.LabInterpretationModifier_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.LabMention'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.LabMention_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.LabReferenceRangeModifier'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.LabReferenceRangeModifier_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.LabValueModifier'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.LabValueModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.Markable'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.Markable_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.MedicationAllergyModifier'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.MedicationAllergyModifier_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.MedicationDosageModifier'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.MedicationDosageModifier_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.MedicationDurationModifier'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.MedicationDurationModifier_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.MedicationEventMention'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.MedicationEventMention_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.MedicationFormModifier'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.MedicationFormModifier_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.MedicationFrequencyModifier'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.MedicationFrequencyModifier_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.MedicationMention'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.MedicationMention_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.MedicationRouteModifier'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.MedicationRouteModifier_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.MedicationStatusChangeModifier'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.MedicationStatusChangeModifier_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.MedicationStrengthModifier'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.MedicationStrengthModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.Modifier'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.Modifier_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.PersonTitleAnnotation'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.PersonTitleAnnotation_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.PolarityModifier'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.PolarityModifier_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.Predicate'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.Predicate_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.ProcedureDeviceModifier'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.ProcedureDeviceModifier_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.ProcedureMention'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.ProcedureMention_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.ProcedureMethodModifier'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.ProcedureMethodModifier_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.RangeAnnotation'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.RangeAnnotation_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.RomanNumeralAnnotation'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.RomanNumeralAnnotation_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.SemanticArgument'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.SemanticArgument_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.SeverityModifier'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.SeverityModifier_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.SignSymptomMention'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.SubjectModifier'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.SubjectModifier_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.TimeAnnotation'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.TimeAnnotation_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.TimeMention'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.TimeMention_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.UncertaintyModifier'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textsem.UncertaintyModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.List'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textspan.List_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textspan.ListEntry'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textspan.ListEntry_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textspan.Paragraph'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textspan.Paragraph_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Segment'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textspan.Segment_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textspan.Sentence'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.textspan.Sentence_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.Pair'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.Pair_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.Pairs'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.Pairs_Type'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.util.ProbabilityDistribution'.
[INFO] JCasGen: Replacing:
'org.apache.ctakes.typesystem.type.util.ProbabilityDistribution_Type'.
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @
ctakes-type-system ---
[INFO] Compiling 322 source files to
C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-type-system\target\classes
[INFO]
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @
ctakes-type-system ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory
C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-type-system\src\test\resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @
ctakes-type-system ---
[INFO] No sources to compile
[INFO]
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @
ctakes-type-system ---
[INFO] Surefire report directory:
C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-type-system\target\surefire-reports
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Results :
Tests run: 0, Failures: 0, Errors: 0, Skipped: 0
[INFO]
[INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ ctakes-type-system ---
[INFO] Building jar:
C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-type-system\target\ctakes-type-system-4.0.1-SNAPSHOT.jar
[INFO]
[INFO] --- maven-site-plugin:3.1:attach-descriptor (attach-descriptor) @
ctakes-type-system ---
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES utils 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-utils
---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @
ctakes-utils ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory
C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-utils\src\main\resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-utils
---
[INFO] Nothing to compile - all classes are up to date
[INFO]
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @
ctakes-utils ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory
C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-utils\src\test\resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @
ctakes-utils ---
[INFO] No sources to compile
[INFO]
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-utils ---
[INFO] Surefire report directory:
C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-utils\target\surefire-reports
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Results :
Tests run: 0, Failures: 0, Errors: 0, Skipped: 0
[INFO]
[INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ ctakes-utils ---
[INFO] Building jar:
C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-utils\target\ctakes-utils-4.0.1-SNAPSHOT.jar
[INFO]
[INFO] --- maven-site-plugin:3.1:attach-descriptor (attach-descriptor) @
ctakes-utils ---
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES core 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-core ---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @
ctakes-core ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory
C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-core\src\main\resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-core ---
[INFO] Nothing to compile - all classes are up to date
[INFO]
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @
ctakes-core ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory
C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-core\src\test\resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @
ctakes-core ---
[INFO] Nothing to compile - all classes are up to date
[INFO]
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-core ---
[INFO] Surefire report directory:
C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-core\target\surefire-reports
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Running org.apache.ctakes.core.ae.SentenceDetectorAnnotatorTest
Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 0.286 sec <<<
FAILURE!
Running org.apache.ctakes.core.ae.SimpleSegmentAnnotatorTests
Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 0.017 sec <<<
FAILURE!
Running org.apache.ctakes.core.ae.TestCDASegmentAnnotator
Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 0 sec <<<
FAILURE!
Running org.apache.ctakes.core.ae.TokenizerAnnotatorPTBTests
Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 0 sec <<<
FAILURE!
Running org.apache.ctakes.core.ci.HyphenTextModifierImplTests
Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 0.016 sec <<<
FAILURE!
Results :
Tests in error:
initializationError(org.apache.ctakes.core.ae.SentenceDetectorAnnotatorTest):
org/hamcrest/SelfDescribing
initializationError(org.apache.ctakes.core.ae.SimpleSegmentAnnotatorTests):
org/hamcrest/SelfDescribing
initializationError(org.apache.ctakes.core.ae.TestCDASegmentAnnotator):
org/hamcrest/SelfDescribing
initializationError(org.apache.ctakes.core.ae.TokenizerAnnotatorPTBTests):
org/hamcrest/SelfDescribing
initializationError(org.apache.ctakes.core.ci.HyphenTextModifierImplTests):
org/hamcrest/SelfDescribing
Tests run: 5, Failures: 0, Errors: 5, Skipped: 0
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ...................................... SUCCESS [ 5.764 s]
[INFO] ctakes-gui-res ..................................... SUCCESS [ 6.106 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [ 7.051 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 2.113 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [ 0.820 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [ 3.752 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [ 1.339 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [ 12.484 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [ 1.700 s]
[INFO] Apache cTAKES core ................................. FAILURE [ 6.373 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SKIPPED
[INFO] Apache cTAKES document preprocessor ................ SKIPPED
[INFO] Apache cTAKES Resources lvg ........................ SKIPPED
[INFO] Apache cTAKES LVG lexical tools .................... SKIPPED
[INFO] Apache cTAKES Resources ne-contexts ................ SKIPPED
[INFO] Apache cTAKES named entity contexts ................ SKIPPED
[INFO] Apache cTAKES Resources assertion .................. SKIPPED
[INFO] Apache cTAKES Resources constituency-parser ........ SKIPPED
[INFO] Apache cTAKES Constituency Parser .................. SKIPPED
[INFO] Apache cTAKES Resources dependency-parser .......... SKIPPED
[INFO] Apache cTAKES Resources pos-tagger ................. SKIPPED
[INFO] Apache cTAKES part-of-speech tagger ................ SKIPPED
[INFO] Apache cTAKES Dependency Parser .................... SKIPPED
[INFO] Apache cTAKES context dependent tokenizer .......... SKIPPED
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SKIPPED
[INFO] Apache cTAKES chunker .............................. SKIPPED
[INFO] Apache cTAKES Assertion ............................ SKIPPED
[INFO] ctakes-clinical-pipeline-res ....................... SKIPPED
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SKIPPED
[INFO] Apache cTAKES Relation Extractor ................... SKIPPED
[INFO] Apache cTAKES Temporal Information Extraction ...... SKIPPED
[INFO] Apache cTAKES CoReference Resolver ................. SKIPPED
[INFO] ctakes-gui ......................................... SKIPPED
[INFO] Apache cTAKES Resources dictionary-lookup .......... SKIPPED
[INFO] Apache cTAKES dictionary lookup .................... SKIPPED
[INFO] Apache cTAKES Resources drug-ner ................... SKIPPED
[INFO] Apache cTAKES Drug NER ............................. SKIPPED
[INFO] Apache cTAKES Resources side-effect ................ SKIPPED
[INFO] Apache cTAKES Side Effects ......................... SKIPPED
[INFO] Apache cTAKES Resources smoking-status ............. SKIPPED
[INFO] Apache cTAKES Smoking Status ....................... SKIPPED
[INFO] Apache cTAKES Resources assertion-zoner ............ SKIPPED
[INFO] Apache cTAKES Assertion's zoner .................... SKIPPED
[INFO] ctakes-examples-res ................................ SKIPPED
[INFO] ctakes-examples .................................... SKIPPED
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SKIPPED
[INFO] Apache cTAKES YTEX ................................. SKIPPED
[INFO] Apache cTAKES YTEX UIMA ............................ SKIPPED
[INFO] Apache cTAKES YTEX Web ............................. SKIPPED
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... SKIPPED
[INFO] Apache cTAKES template filler ...................... SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 49.189 s
[INFO] Finished at: 2018-03-16T12:03:30+05:30
[INFO] Final Memory: 48M/485M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal
org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (default-test) on
project ctakes-core: There are test failures.
[ERROR]
[ERROR] Please refer to
C:\Users\AMAL\eclipse-workspace\ctakes\ctakes-core\target\surefire-reports for
the individual test results.
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e
switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please
read the following articles:
[ERROR] [Help 1]
http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-core
How solve it??????
Thanks & Regards
AMAL M
9633746869
