Hello folks,
I ran into these errors when following the instructions mentioned in CTakes
YTEX installation link:
https://cwiki.apache.org/confluence/display/CTAKES/YTEX+Installation
for this step:
nohup ../../ant -f build-setup.xml all > setup.out 2>&1 &
The error log is attached.
On inspecting and digging around, I found that the error I'm getting,
matches the one here: https://issues.apache.org/jira/browse/CTAKES-523
Could you guys please let me know me if there is a quick resolution to
handle this issue ? It will be most helpful.
Thanks and Regards,
- Bharat
x@a:/media/root/81adf95a-4b78-471d-96f4-62fad38fd452/software/apache-ctakes-4.0.0/bin/ctakes-ytex/scripts$
../../ant -f build-setup.xml all
Buildfile:
/media/root/81adf95a-4b78-471d-96f4-62fad38fd452/software/apache-ctakes-4.0.0/bin/ctakes-ytex/scripts/build-setup.xml
dbping:
dbping:
[java] DBPing: connection succeeded
templateToConfig.init:
templateToConfig.extractTemplates:
[echo] unpacking ytex templates from
/media/root/81adf95a-4b78-471d-96f4-62fad38fd452/software/apache-ctakes-4.0.0/lib/ctakes-ytex-res-4.0.0.jar
to
/media/root/81adf95a-4b78-471d-96f4-62fad38fd452/software/apache-ctakes-4.0.0/resources
[unzip] Expanding:
/media/root/81adf95a-4b78-471d-96f4-62fad38fd452/software/apache-ctakes-4.0.0/lib/ctakes-ytex-res-4.0.0.jar
into
/media/root/81adf95a-4b78-471d-96f4-62fad38fd452/software/apache-ctakes-4.0.0/resources
templateToConfig.updateConfig:
[echo] config.source.dir =
/media/root/81adf95a-4b78-471d-96f4-62fad38fd452/software/apache-ctakes-4.0.0/resources
[echo] config.generated.dir =
/media/root/81adf95a-4b78-471d-96f4-62fad38fd452/software/apache-ctakes-4.0.0/resources
[copy] Copying 6 files to
/media/root/81adf95a-4b78-471d-96f4-62fad38fd452/software/apache-ctakes-4.0.0/resources
templateToConfig:
setupDatabase:
init:
umls.check.mrconso:
[echo] umls.schema umls
[echo] umls.catalog
[sql] Executing commands
[sql] 1 of 1 SQL statements executed successfully
[echo] mrconso.out = MRCONSO
[echo]
[delete] Deleting: /tmp/mrconso-check.txt
[echo] mrconso.exists = true
umls.all:
[echo] mrconso.exists = true
init:
umls.dropAuiFword:
[echo] drop ytex umls_aui_fword table
jdbc.sqlcmd:
[echo] db.schemaytex
[echo] umls.schema umls
[echo] umls.catalog
[echo] execute ./mysql/./umls/drop_tables.sql
[copy] Copying 1 file to /tmp
[echo] executing /tmp/ytex1235180055.sql
[sql] Executing resource: /tmp/ytex1235180055.sql
[sql] 2 of 2 SQL statements executed successfully
[delete] Deleting: /tmp/ytex1235180055.sql
[delete] Deleting: /tmp/ytex1437930044use.sql
umls.setupAuiFword:
[echo] create ytex umls_aui_fword tables
jdbc.sqlcmd:
[echo] db.schemaytex
[echo] umls.schema umls
[echo] umls.catalog
[echo] execute ./mysql/./umls/create_tables.sql
[copy] Copying 1 file to /tmp
[echo] executing /tmp/ytex651425872.sql
[sql] Executing resource: /tmp/ytex651425872.sql
[sql] 2 of 2 SQL statements executed successfully
[delete] Deleting: /tmp/ytex651425872.sql
[delete] Deleting: /tmp/ytex148577633use.sql
[echo] setting up umls_aui_fword table. please be patient - this can take
a while
[java] log4j: reset attribute= "false".
[java] log4j: Threshold ="null".
[java] log4j: Retreiving an instance of org.apache.log4j.Logger.
[java] log4j: Setting [ProgressAppender] additivity to [false].
[java] log4j: Level value for ProgressAppender is [INFO].
[java] log4j: ProgressAppender level set to INFO
[java] log4j: Class name: [org.apache.log4j.ConsoleAppender]
[java] log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
[java] log4j: Setting property [conversionPattern] to [%m].
[java] log4j: Adding appender named [noEolAppender] to category
[ProgressAppender].
[java] log4j: Retreiving an instance of org.apache.log4j.Logger.
[java] log4j: Setting [ProgressDone] additivity to [false].
[java] log4j: Level value for ProgressDone is [INFO].
[java] log4j: ProgressDone level set to INFO
[java] log4j: Class name: [org.apache.log4j.ConsoleAppender]
[java] log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
[java] log4j: Setting property [conversionPattern] to [%m%n].
[java] log4j: Adding appender named [eolAppender] to category
[ProgressDone].
[java] log4j: Level value for root is [INFO].
[java] log4j: root level set to INFO
[java] log4j: Class name: [org.apache.log4j.ConsoleAppender]
[java] log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
[java] log4j: Setting property [conversionPattern] to [%d{dd MMM yyyy
HH:mm:ss} %5p %c{1} - %m%n].
[java] log4j: Adding appender named [consoleAppender] to category [root].
[java] 12 Nov 2018 22:45:03 INFO SetupAuiFirstWord - loading
lvg.properties
from:/media/root/81adf95a-4b78-471d-96f4-62fad38fd452/software/apache-ctakes-4.0.0/resources/org/apache/ctakes/lvg/data/config/lvg.properties
[java] 12 Nov 2018 22:45:04 INFO ENGINE - open start - state not modified
[java] 12 Nov 2018 22:45:04 INFO ENGINE - dataFileCache open start
[java] 12 Nov 2018 22:45:04 INFO ENGINE - dataFileCache open end
[java] 12 Nov 2018 22:45:05 INFO ClassPathXmlApplicationContext -
Refreshing
org.springframework.context.support.ClassPathXmlApplicationContext@5ccddd20:
startup date [Mon Nov 12 22:45:05 CST 2018]; root of context hierarchy
[java] 12 Nov 2018 22:45:05 INFO XmlBeanDefinitionReader - Loading XML
bean definitions from URL
[jar:file:/media/root/81adf95a-4b78-471d-96f4-62fad38fd452/software/apache-ctakes-4.0.0/lib/ctakes-ytex-res-4.0.0.jar!/org/apache/ctakes/ytex/kernelBeanRefContext.xml]
[java] 12 Nov 2018 22:45:05 INFO XmlBeanDefinitionReader - Loading XML
bean definitions from URL
[jar:file:/media/root/81adf95a-4b78-471d-96f4-62fad38fd452/software/apache-ctakes-4.0.0/lib/ctakes-ytex-web-4.0.0-classes.jar!/org/apache/ctakes/ytex/kernelBeanRefContext.xml]
[java] 12 Nov 2018 22:45:05 INFO DefaultListableBeanFactory - Overriding
bean definition for bean 'kernelApplicationContext': replacing [Generic bean:
class [org.springframework.context.support.ClassPathXmlApplicationContext];
scope=; abstract=false; lazyInit=false; autowireMode=0; dependencyCheck=0;
autowireCandidate=true; primary=false; factoryBeanName=null;
factoryMethodName=null; initMethodName=null; destroyMethodName=null; defined in
URL
[jar:file:/media/root/81adf95a-4b78-471d-96f4-62fad38fd452/software/apache-ctakes-4.0.0/lib/ctakes-ytex-res-4.0.0.jar!/org/apache/ctakes/ytex/kernelBeanRefContext.xml]]
with [Generic bean: class
[org.springframework.context.support.ClassPathXmlApplicationContext]; scope=;
abstract=false; lazyInit=false; autowireMode=0; dependencyCheck=0;
autowireCandidate=true; primary=false; factoryBeanName=null;
factoryMethodName=null; initMethodName=null; destroyMethodName=null; defined in
URL
[jar:file:/media/root/81adf95a-4b78-471d-96f4-62fad38fd452/software/apache-ctakes-4.0.0/lib/ctakes-ytex-web-4.0.0-classes.jar!/org/apache/ctakes/ytex/kernelBeanRefContext.xml]]
[java] 12 Nov 2018 22:45:05 INFO DefaultListableBeanFactory -
Pre-instantiating singletons in
org.springframework.beans.factory.support.DefaultListableBeanFactory@489115ef:
defining beans [kernelApplicationContext]; root of factory hierarchy
[java] 12 Nov 2018 22:45:05 INFO ClassPathXmlApplicationContext -
Refreshing
org.springframework.context.support.ClassPathXmlApplicationContext@2cdd0d4b:
startup date [Mon Nov 12 22:45:05 CST 2018]; root of context hierarchy
[java] 12 Nov 2018 22:45:05 INFO XmlBeanDefinitionReader - Loading XML
bean definitions from class path resource
[org/apache/ctakes/ytex/beans-datasource.xml]
[java] 12 Nov 2018 22:45:05 INFO XmlBeanDefinitionReader - Loading XML
bean definitions from class path resource
[org/apache/ctakes/ytex/beans-kernel.hbm.xml]
[java] 12 Nov 2018 22:45:05 INFO XmlBeanDefinitionReader - Loading XML
bean definitions from class path resource
[org/apache/ctakes/ytex/beans-kernel.xml]
[java] 12 Nov 2018 22:45:05 INFO PropertyPlaceholderConfigurer - Loading
properties file from class path resource
[org/apache/ctakes/ytex/ytex-default.properties]
[java] 12 Nov 2018 22:45:05 INFO PropertyPlaceholderConfigurer - Loading
properties file from class path resource
[org/apache/ctakes/ytex/ytex.properties]
[java] 12 Nov 2018 22:45:05 INFO PropertyPlaceholderConfigurer - Loading
properties file from class path resource
[org/apache/ctakes/ytex/ytex-umls.properties]
[java] 12 Nov 2018 22:45:05 INFO DefaultListableBeanFactory -
Pre-instantiating singletons in
org.springframework.beans.factory.support.DefaultListableBeanFactory@533bda92:
defining beans
[org.springframework.beans.factory.config.PropertyPlaceholderConfigurer#0,ytexProperties,hibernateProperties,dataSource,txAdvice,txTemplate,txTemplateNew,transactionManager,sessionFactory,org.springframework.aop.config.internalAutoProxyCreator,daoOperation,umlsDaoOperation,exporterOperation,wekaImporter,mapperOperation,treeOperation,utilOperation,corpusEvaluatorOperation,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#0,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#1,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#2,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#3,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#4,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#5,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#6,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#7,kernelEvaluationDao,conceptDao,umlsDao,wekaBagOfWordsExporter,gramMatrixExporter,documentResultInstanceImporter,wekaResultsImporter,classifierEvaluationDao,libSVMGramMatrixExporter,rGramMatrixExporter,libsvmUtil,instanceTreeBuilder,abstractNormKernel,equalityKernel,atttributeProductKernel,cacheManager,abstractCorpusKernelEvaluator,foldGenerator,kernelUtil,baseClassifierEvaluationParser,semiLEvaluationParser,libSVMParser,svmLightParser,svmlinParser,ClassifierEvaluationImporter,sparseDataExporter,sparseDataFormatterFactory,svmLightFormatterFactory,libSVMFormatterFactory,svmLinFormatterFactory,sgtFormatterFactory,sparseMatrixFormatterFactory,semiLFormatterFactory,wekaFormatterFactory,instanceDataExporter,infogainAttributeEval,rankerSearch,infogainAttributeSelection,wekaAttributeEvaluator,infoContentEvaluator,intrinsicInfoContentEvaluator,imputedFeatureEvaluator,cytoscapeHelper,abstractKernelCacheAdvice,pageRankService];
root of factory hierarchy
[java] 12 Nov 2018 22:45:05 INFO PropertiesFactoryBean - Loading
properties file from class path resource
[org/apache/ctakes/ytex/ytex.properties]
[java] 12 Nov 2018 22:45:06 INFO Version - HCANN000001: Hibernate Commons
Annotations {4.0.2.Final}
[java] 12 Nov 2018 22:45:06 INFO Version - HHH000412: Hibernate Core
{4.2.6.Final}
[java] 12 Nov 2018 22:45:06 INFO Environment - HHH000206:
hibernate.properties not found
[java] 12 Nov 2018 22:45:06 INFO Environment - HHH000021: Bytecode
provider name : javassist
[java] 12 Nov 2018 22:45:07 INFO Dialect - HHH000400: Using dialect:
org.hibernate.dialect.MySQLMyISAMDialect
[java] 12 Nov 2018 22:45:07 INFO TransactionFactoryInitiator - HHH000399:
Using default transaction strategy (direct JDBC transactions)
[java] 12 Nov 2018 22:45:07 INFO ASTQueryTranslatorFactory - HHH000397:
Using ASTQueryTranslatorFactory
[java] 12 Nov 2018 22:45:07 INFO UpdateTimestampsCache - HHH000250:
Starting update timestamps cache at region:
org.hibernate.cache.spi.UpdateTimestampsCache
[java] 12 Nov 2018 22:45:07 INFO StandardQueryCache - HHH000248: Starting
query cache at region: org.hibernate.cache.internal.StandardQueryCache
[java] 12 Nov 2018 22:45:08 INFO HibernateTransactionManager - Using
DataSource [org.apache.commons.dbcp.BasicDataSource@4fe875be] of Hibernate
SessionFactory for HibernateTransactionManager
[java] Exception in thread "main" java.lang.ExceptionInInitializerError
[java] at
org.apache.ctakes.ytex.tools.SetupAuiFirstWord.setupAuiFirstWord(SetupAuiFirstWord.java:190)
[java] at
org.apache.ctakes.ytex.tools.SetupAuiFirstWord.main(SetupAuiFirstWord.java:186)
[java] Caused by:
org.springframework.beans.factory.access.BootstrapException: Unable to
initialize group definition. Group resource name
[classpath*:org/apache/ctakes/ytex/kernelBeanRefContext.xml], factory key
[kernelApplicationContext]; nested exception is
org.springframework.beans.factory.BeanCreationException: Error creating bean
with name 'kernelApplicationContext' defined in URL
[jar:file:/media/root/81adf95a-4b78-471d-96f4-62fad38fd452/software/apache-ctakes-4.0.0/lib/ctakes-ytex-web-4.0.0-classes.jar!/org/apache/ctakes/ytex/kernelBeanRefContext.xml]:
Instantiation of bean failed; nested exception is
org.springframework.beans.BeanInstantiationException: Could not instantiate
bean class
[org.springframework.context.support.ClassPathXmlApplicationContext]:
Constructor threw exception; nested exception is
org.springframework.beans.factory.BeanCreationException: Error creating bean
with name 'gramMatrixExporter' defined in class path resource
[org/apache/ctakes/ytex/beans-kernel.xml]: Initialization of bean failed;
nested exception is org.springframework.beans.FatalBeanException: Failed to
obtain BeanInfo for class [org.apache.ctakes.ytex.weka.GramMatrixExporterImpl];
nested exception is java.beans.IntrospectionException: type mismatch between
read and write methods
[java] at
org.springframework.beans.factory.access.SingletonBeanFactoryLocator.useBeanFactory(SingletonBeanFactoryLocator.java:386)
[java] at
org.apache.ctakes.ytex.kernel.KernelContextHolder.<clinit>(KernelContextHolder.java:29)
[java] ... 2 more
[java] Caused by: org.springframework.beans.factory.BeanCreationException:
Error creating bean with name 'kernelApplicationContext' defined in URL
[jar:file:/media/root/81adf95a-4b78-471d-96f4-62fad38fd452/software/apache-ctakes-4.0.0/lib/ctakes-ytex-web-4.0.0-classes.jar!/org/apache/ctakes/ytex/kernelBeanRefContext.xml]:
Instantiation of bean failed; nested exception is
org.springframework.beans.BeanInstantiationException: Could not instantiate
bean class
[org.springframework.context.support.ClassPathXmlApplicationContext]:
Constructor threw exception; nested exception is
org.springframework.beans.factory.BeanCreationException: Error creating bean
with name 'gramMatrixExporter' defined in class path resource
[org/apache/ctakes/ytex/beans-kernel.xml]: Initialization of bean failed;
nested exception is org.springframework.beans.FatalBeanException: Failed to
obtain BeanInfo for class [org.apache.ctakes.ytex.weka.GramMatrixExporterImpl];
nested exception is java.beans.IntrospectionException: type mismatch between
read and write methods
[java] at
org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:288)
[java] at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:1035)
[java] at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:939)
[java] at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:485)
[java] at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:456)
[java] at
org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:294)
[java] at
org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:225)
[java] at
org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:291)
[java] at
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:193)
[java] at
org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:609)
[java] at
org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:918)
[java] at
org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:469)
[java] at
org.springframework.context.access.ContextSingletonBeanFactoryLocator.initializeDefinition(ContextSingletonBeanFactoryLocator.java:143)
[java] at
org.springframework.beans.factory.access.SingletonBeanFactoryLocator.useBeanFactory(SingletonBeanFactoryLocator.java:381)
[java] ... 3 more
[java] Caused by: org.springframework.beans.BeanInstantiationException:
Could not instantiate bean class
[org.springframework.context.support.ClassPathXmlApplicationContext]:
Constructor threw exception; nested exception is
org.springframework.beans.factory.BeanCreationException: Error creating bean
with name 'gramMatrixExporter' defined in class path resource
[org/apache/ctakes/ytex/beans-kernel.xml]: Initialization of bean failed;
nested exception is org.springframework.beans.FatalBeanException: Failed to
obtain BeanInfo for class [org.apache.ctakes.ytex.weka.GramMatrixExporterImpl];
nested exception is java.beans.IntrospectionException: type mismatch between
read and write methods
[java] at
org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:162)
[java] at
org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:110)
[java] at
org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:280)
[java] ... 16 more
[java] Caused by: org.springframework.beans.factory.BeanCreationException:
Error creating bean with name 'gramMatrixExporter' defined in class path
resource [org/apache/ctakes/ytex/beans-kernel.xml]: Initialization of bean
failed; nested exception is org.springframework.beans.FatalBeanException:
Failed to obtain BeanInfo for class
[org.apache.ctakes.ytex.weka.GramMatrixExporterImpl]; nested exception is
java.beans.IntrospectionException: type mismatch between read and write methods
[java] at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:527)
[java] at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:456)
[java] at
org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:294)
[java] at
org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:225)
[java] at
org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:291)
[java] at
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:193)
[java] at
org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:609)
[java] at
org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:918)
[java] at
org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:469)
[java] at
org.springframework.context.support.ClassPathXmlApplicationContext.<init>(ClassPathXmlApplicationContext.java:139)
[java] at
org.springframework.context.support.ClassPathXmlApplicationContext.<init>(ClassPathXmlApplicationContext.java:93)
[java] at
sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
[java] at
sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
[java] at
sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
[java] at
java.lang.reflect.Constructor.newInstance(Constructor.java:423)
[java] at
org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:147)
[java] ... 18 more
[java] Caused by: org.springframework.beans.FatalBeanException: Failed to
obtain BeanInfo for class [org.apache.ctakes.ytex.weka.GramMatrixExporterImpl];
nested exception is java.beans.IntrospectionException: type mismatch between
read and write methods
[java] at
org.springframework.beans.CachedIntrospectionResults.<init>(CachedIntrospectionResults.java:262)
[java] at
org.springframework.beans.CachedIntrospectionResults.forClass(CachedIntrospectionResults.java:149)
[java] at
org.springframework.beans.BeanWrapperImpl.getCachedIntrospectionResults(BeanWrapperImpl.java:324)
[java] at
org.springframework.beans.BeanWrapperImpl.getPropertyDescriptors(BeanWrapperImpl.java:331)
[java] at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.filterPropertyDescriptorsForDependencyCheck(AbstractAutowireCapableBeanFactory.java:1242)
[java] at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1101)
[java] at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:517)
[java] ... 33 more
[java] Caused by: java.beans.IntrospectionException: type mismatch between
read and write methods
[java] at
java.beans.PropertyDescriptor.findPropertyType(PropertyDescriptor.java:661)
[java] at
java.beans.PropertyDescriptor.setReadMethod(PropertyDescriptor.java:257)
[java] at
org.springframework.beans.ExtendedBeanInfo.addOrUpdatePropertyDescriptor(ExtendedBeanInfo.java:282)
[java] at
org.springframework.beans.ExtendedBeanInfo.addOrUpdatePropertyDescriptor(ExtendedBeanInfo.java:180)
[java] at
org.springframework.beans.ExtendedBeanInfo.<init>(ExtendedBeanInfo.java:100)
[java] at
org.springframework.beans.CachedIntrospectionResults.<init>(CachedIntrospectionResults.java:224)
[java] ... 39 more
[java] 12 Nov 2018 22:45:08 INFO DefaultListableBeanFactory - Destroying
singletons in
org.springframework.beans.factory.support.DefaultListableBeanFactory@533bda92:
defining beans
[org.springframework.beans.factory.config.PropertyPlaceholderConfigurer#0,ytexProperties,hibernateProperties,dataSource,txAdvice,txTemplate,txTemplateNew,transactionManager,sessionFactory,org.springframework.aop.config.internalAutoProxyCreator,daoOperation,umlsDaoOperation,exporterOperation,wekaImporter,mapperOperation,treeOperation,utilOperation,corpusEvaluatorOperation,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#0,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#1,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#2,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#3,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#4,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#5,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#6,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#7,kernelEvaluationDao,conceptDao,umlsDao,wekaBagOfWordsExporter,gramMatrixExporter,documentResultInstanceImporter,wekaResultsImporter,classifierEvaluationDao,libSVMGramMatrixExporter,rGramMatrixExporter,libsvmUtil,instanceTreeBuilder,abstractNormKernel,equalityKernel,atttributeProductKernel,cacheManager,abstractCorpusKernelEvaluator,foldGenerator,kernelUtil,baseClassifierEvaluationParser,semiLEvaluationParser,libSVMParser,svmLightParser,svmlinParser,ClassifierEvaluationImporter,sparseDataExporter,sparseDataFormatterFactory,svmLightFormatterFactory,libSVMFormatterFactory,svmLinFormatterFactory,sgtFormatterFactory,sparseMatrixFormatterFactory,semiLFormatterFactory,wekaFormatterFactory,instanceDataExporter,infogainAttributeEval,rankerSearch,infogainAttributeSelection,wekaAttributeEvaluator,infoContentEvaluator,intrinsicInfoContentEvaluator,imputedFeatureEvaluator,cytoscapeHelper,abstractKernelCacheAdvice,pageRankService];
root of factory hierarchy
[java] 12 Nov 2018 22:45:08 INFO DefaultListableBeanFactory - Destroying
singletons in
org.springframework.beans.factory.support.DefaultListableBeanFactory@489115ef:
defining beans [kernelApplicationContext]; root of factory hierarchy
BUILD FAILED
/media/root/81adf95a-4b78-471d-96f4-62fad38fd452/software/apache-ctakes-4.0.0/bin/ctakes-ytex/scripts/build-setup.xml:55:
The following error occurred while executing this line:
/media/root/81adf95a-4b78-471d-96f4-62fad38fd452/software/apache-ctakes-4.0.0/bin/ctakes-ytex/scripts/data/build.xml:145:
The following error occurred while executing this line:
/media/root/81adf95a-4b78-471d-96f4-62fad38fd452/software/apache-ctakes-4.0.0/bin/ctakes-ytex/scripts/data/build.xml:263:
Java returned: 1
Total time: 9 seconds
