Hi -
I’m new to CTAKES and trying to figure out the Lucene index on rest services.
While running docker file, I’m getting below error:
18 Mar 2019 23:22:11 INFO Chunker - Chunker model file:
org/apache/ctakes/chunker/models/chunker-model.zip
18 Mar 2019 23:22:13 INFO ContextDependentTokenizerAnnotator - Finite state
machines loaded.
18 Mar 2019 23:22:13 INFO AbstractJCasTermAnnotator - Using dictionary lookup
window type: org.apache.ctakes.typesystem.type.textspan.Sentence
18 Mar 2019 23:22:13 INFO AbstractJCasTermAnnotator - Exclusion tagset loaded:
CC CD DT EX IN LS MD PDT POS PP PP$ PRP PRP$ RP TO VB VBD VBG VBN VBP VBZ WDT
WP WPS WRB
18 Mar 2019 23:22:13 INFO AbstractJCasTermAnnotator - Using minimum term text
span: 3
18 Mar 2019 23:22:13 INFO AbstractJCasTermAnnotator - Using Dictionary
Descriptor: org/apache/ctakes/dictionary/lookup/LookupDesc.xml
18 Mar 2019 23:22:13 INFO DictionaryDescriptorParser - Parsing dictionary
specifications:
18 Mar 2019 23:22:13 ERROR CtakesRestController - Error loading pipers
18 Mar 2019 23:22:13 WARN XmlWebApplicationContext - Exception encountered
during context initialization - cancelling refresh attempt:
org.springframework.beans.factory.BeanCreationException: Error creating bean
with name 'ctakesRestController': Invocation of init method failed; nested
exception is javax.servlet.ServletException:
org.apache.uima.resource.ResourceInitializationException: Initialization of
annotator class
"org.apache.ctakes.dictionary.lookup2.concurrent.ThreadSafeFastLookup" failed.
(Descriptor: <unknown>)
18 Mar 2019 23:22:13 ERROR DispatcherServlet - Context initialization failed
org.springframework.beans.factory.BeanCreationException: Error creating bean
with name 'ctakesRestController': Invocation of init method failed; nested
exception is javax.servlet.ServletException:
org.apache.uima.resource.ResourceInitializationException: Initialization of
annotator class
"org.apache.ctakes.dictionary.lookup2.concurrent.ThreadSafeFastLookup" failed.
(Descriptor: <unknown>)
at
org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor.postProcessBeforeInitialization(InitDestroyAnnotationBeanPostProcessor.java:137)
at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyBeanPostProcessorsBeforeInitialization(AbstractAutowireCapableBeanFactory.java:409)
at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1620)
at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:555)
at
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:483)
at
org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:306)
at
org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230)
at
org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:302)
at
org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:197)
at
org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:761)
at
org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:867)
at
org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:543)
at
org.springframework.web.servlet.FrameworkServlet.configureAndRefreshWebApplicationContext(FrameworkServlet.java:668)
at
org.springframework.web.servlet.FrameworkServlet.createWebApplicationContext(FrameworkServlet.java:634)
at
org.springframework.web.servlet.FrameworkServlet.createWebApplicationContext(FrameworkServlet.java:682)
at
org.springframework.web.servlet.FrameworkServlet.initWebApplicationContext(FrameworkServlet.java:553)
at
org.springframework.web.servlet.FrameworkServlet.initServletBean(FrameworkServlet.java:494)
at
org.springframework.web.servlet.HttpServletBean.init(HttpServletBean.java:171)
at javax.servlet.GenericServlet.init(GenericServlet.java:158)
at
org.apache.catalina.core.StandardWrapper.initServlet(StandardWrapper.java:1123)
at
org.apache.catalina.core.StandardWrapper.loadServlet(StandardWrapper.java:1078)
at
org.apache.catalina.core.StandardWrapper.load(StandardWrapper.java:971)
at
org.apache.catalina.core.StandardContext.loadOnStartup(StandardContext.java:4854)
at
org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5170)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
at
org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:713)
at
org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:690)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:695)
at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:978)
at
org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1850)
at
java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at
org.apache.tomcat.util.threads.InlineExecutorService.execute(InlineExecutorService.java:75)
at
java.util.concurrent.AbstractExecutorService.submit(AbstractExecutorService.java:112)
at
org.apache.catalina.startup.HostConfig.deployWARs(HostConfig.java:773)
at
org.apache.catalina.startup.HostConfig.deployApps(HostConfig.java:427)
at org.apache.catalina.startup.HostConfig.start(HostConfig.java:1577)
at
org.apache.catalina.startup.HostConfig.lifecycleEvent(HostConfig.java:309)
at
org.apache.catalina.util.LifecycleBase.fireLifecycleEvent(LifecycleBase.java:123)
at
org.apache.catalina.util.LifecycleBase.setStateInternal(LifecycleBase.java:424)
at
org.apache.catalina.util.LifecycleBase.setState(LifecycleBase.java:367)
at
org.apache.catalina.core.ContainerBase.startInternal(ContainerBase.java:929)
at
org.apache.catalina.core.StandardHost.startInternal(StandardHost.java:831)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
at
org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1377)
at
org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1367)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at
org.apache.tomcat.util.threads.InlineExecutorService.execute(InlineExecutorService.java:75)
at
java.util.concurrent.AbstractExecutorService.submit(AbstractExecutorService.java:134)
at
org.apache.catalina.core.ContainerBase.startInternal(ContainerBase.java:902)
at
org.apache.catalina.core.StandardEngine.startInternal(StandardEngine.java:262)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
at
org.apache.catalina.core.StandardService.startInternal(StandardService.java:423)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
at
org.apache.catalina.core.StandardServer.startInternal(StandardServer.java:928)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
at org.apache.catalina.startup.Catalina.start(Catalina.java:638)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:350)
at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:492)
Caused by: javax.servlet.ServletException:
org.apache.uima.resource.ResourceInitializationException: Initialization of
annotator class
"org.apache.ctakes.dictionary.lookup2.concurrent.ThreadSafeFastLookup" failed.
(Descriptor: <unknown>)
at
org.apache.ctakes.rest.service.CtakesRestController$PipelineRunner.<init>(CtakesRestController.java:95)
at
org.apache.ctakes.rest.service.CtakesRestController$PipelineRunner.<init>(CtakesRestController.java:82)
at
org.apache.ctakes.rest.service.CtakesRestController.init(CtakesRestController.java:57)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at
org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor$LifecycleElement.invoke(InitDestroyAnnotationBeanPostProcessor.java:366)
at
org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor$LifecycleMetadata.invokeInitMethods(InitDestroyAnnotationBeanPostProcessor.java:311)
at
org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor.postProcessBeforeInitialization(InitDestroyAnnotationBeanPostProcessor.java:134)
... 62 more
Caused by: org.apache.uima.resource.ResourceInitializationException:
Initialization of annotator class
"org.apache.ctakes.dictionary.lookup2.concurrent.ThreadSafeFastLookup" failed.
(Descriptor: <unknown>)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at
org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:354)
at
org.apache.ctakes.rest.service.CtakesRestController$PipelineRunner.<init>(CtakesRestController.java:91)
... 71 more
Caused by: org.apache.uima.resource.ResourceInitializationException: EXCEPTION
MESSAGE LOCALIZATION FAILED: java.util.MissingResourceException: Can't find
resource for bundle java.util.PropertyResourceBundle, key Missing name for
Dictionary Name
at
org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:140)
at
org.apache.ctakes.core.concurrent.ThreadSafeWrapper.initialize(ThreadSafeWrapper.java:52)
at
org.apache.ctakes.dictionary.lookup2.concurrent.ThreadSafeFastLookup.initialize(ThreadSafeFastLookup.java:38)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
... 85 more
Caused by: org.apache.uima.analysis_engine.annotator.AnnotatorContextException:
EXCEPTION MESSAGE LOCALIZATION FAILED: java.util.MissingResourceException:
Can't find resource for bundle java.util.PropertyResourceBundle, key Missing
name for Dictionary Name
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.getName(DictionaryDescriptorParser.java:293)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.java:177)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.java:155)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.java:127)
at
org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:138)
... 88 more
Any help is greatly appreciated.
Thanks,
Raghav
