Thanks Sean, I am just looking to duplicate the default functionality of cTAKES (with the addition of one more dictionary from UMLS- HPO) and wanted to make sure I had not inadvertently left out something by using a custom dictionary.
On Fri, May 10, 2019 at 10:11 AM Finan, Sean < [email protected]> wrote: > Hi Jeff, > > The 4. default dictionary no longer filters rxnorm to only contain orange > book terms. > > If you want to filter your rxnorm terms using orange book it is possible > by filtering your umls db before using the dictionary creator or by culling > rxnorm terms in the created dictionary. > > It might be easier to just ignore non-orange book cuis during analysis > (post-ctakes). > > > https://www.fda.gov/drugs/drug-approvals-and-databases/approved-drug-products-therapeutic-equivalence-evaluations-orange-book > > Sean > ________________________________________ > From: Jeffrey Miller <[email protected]> > Sent: Friday, May 10, 2019 9:46 AM > To: [email protected] > Subject: RxNorm and Orange book [EXTERNAL] > > Hi, > > Does cTAKES 4.0.0 still make use of the Orange Book and RxNorm_Index as > indicated in the docs here: > > https://urldefense.proofpoint.com/v2/url?u=https-3A__cwiki.apache.org_confluence_display_CTAKES_cTAKES-2B3.1-2BDictionaries-2Band-2BModels&d=DwIBaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=AM_4Qph_pbOQcEpv6TwWx_Rs0Yr4GNuWRGh_COiU4lI&s=RNX2CGey1QeHhYIL6xr2Gj9PQuH_3BEbWGBHolx1fLM&e= > ? > > I ask because we are building our own dictionary via the dictionary creator > GUI and have included RxNorm from the UMLS and wasn't sure what role the > Orange Book and index play and if I need to do something special to include > them when not using the ctakesresources hosted on sourceforge. > > Thanks, > Jeff >
