As far as I know, it's a more generic error. Could you please let us know what action you are trying to perform and steps involved in reproducing the issue.
On Saturday, August 10, 2019, Sebastien Boussard <[email protected]> wrote: > Hello, > I’m an intern in the Stanford Biomedical Informatics Lab and I've been > working on getting a ctakes page for a week, and I’ve been getting a lot of > errors. I have been getting a filed to initialize error for the last day > and a half and I can not solve it. I will send you the whole log, if you > can help me out it would be greatly appreciated. > > log4j: reset attribute= "false". > log4j: Threshold ="null". > log4j: Retreiving an instance of org.apache.log4j.Logger. > log4j: Setting [ProgressAppender] additivity to [false]. > log4j: Level value for ProgressAppender is [INFO]. > log4j: ProgressAppender level set to INFO > log4j: Class name: [org.apache.log4j.ConsoleAppender] > log4j: Parsing layout of class: "org.apache.log4j.PatternLayout" > log4j: Setting property [conversionPattern] to [%m]. > log4j: Adding appender named [noEolAppender] to category > [ProgressAppender]. > log4j: Retreiving an instance of org.apache.log4j.Logger. > log4j: Setting [ProgressDone] additivity to [false]. > log4j: Level value for ProgressDone is [INFO]. > log4j: ProgressDone level set to INFO > log4j: Class name: [org.apache.log4j.ConsoleAppender] > log4j: Parsing layout of class: "org.apache.log4j.PatternLayout" > log4j: Setting property [conversionPattern] to [%m%n]. > log4j: Adding appender named [eolAppender] to category [ProgressDone]. > log4j: Level value for root is [INFO]. > log4j: root level set to INFO > log4j: Class name: [org.apache.log4j.ConsoleAppender] > log4j: Parsing layout of class: "org.apache.log4j.PatternLayout" > log4j: Setting property [conversionPattern] to [%d{dd MMM yyyy HH:mm:ss} > %5p %c{1} - %m%n]. > log4j: Adding appender named [consoleAppender] to category [root]. > /Users/sboussard/Desktop/apache-ctakes-4.0.0/resources/ > org/apache/ctakes/clinical/pipeline/DefaultFastPipeline.piper > 09 Aug 2019 11:28:50 INFO SentenceDetector - Sentence detector model > file: org/apache/ctakes/core/sentdetect/sd-med-model.zip > 09 Aug 2019 11:28:50 INFO TokenizerAnnotatorPTB - Initializing > org.apache.ctakes.core.ae.TokenizerAnnotatorPTB > 09 Aug 2019 11:28:50 INFO ContextDependentTokenizerAnnotator - Finite > state machines loaded. > 09 Aug 2019 11:28:50 INFO POSTagger - POS tagger model file: > org/apache/ctakes/postagger/models/mayo-pos.zip > 09 Aug 2019 11:28:51 INFO Chunker - Chunker model file: > org/apache/ctakes/chunker/models/chunker-model.zip > 09 Aug 2019 11:28:52 INFO AbstractJCasTermAnnotator - Using dictionary > lookup window type: org.apache.ctakes.typesystem.type.textspan.Sentence > 09 Aug 2019 11:28:52 INFO AbstractJCasTermAnnotator - Exclusion tagset > loaded: CC CD DT EX IN LS MD PDT POS PP PP$ PRP PRP$ RP TO VB VBD VBG VBN > VBP VBZ WDT WP WPS WRB > 09 Aug 2019 11:28:52 INFO AbstractJCasTermAnnotator - Using minimum term > text span: 3 > 09 Aug 2019 11:28:52 INFO AbstractJCasTermAnnotator - Using Dictionary > Descriptor: org/apache/ctakes/dictionary/lookup/fast/sno_rx_16ab.xml > 09 Aug 2019 11:28:52 INFO DictionaryDescriptorParser - Parsing dictionary > specifications: > 09 Aug 2019 11:28:52 INFO UmlsUserApprover - Checking UMLS Account at > https://uts-ws.nlm.nih.gov/restful/isValidUMLSUser for user boussard: > ..09 Aug 2019 11:28:53 INFO UmlsUserApprover - UMLS Account at > https://uts-ws.nlm.nih.gov/restful/isValidUMLSUser for user boussard has > been validated > > 09 Aug 2019 11:28:53 ERROR ClinicalProcessor - Initialization of annotator > class "org.apache.ctakes.dictionary.lookup2.ae.DefaultJCasTermAnnotator" > failed. (Descriptor: <unknown>) > > -- Regards, Gandhi "The best way to find urself is to lose urself in the service of others !!!"
