Thanks Gandhi
I can get CVD run on the binary version of cTAKES.
but I have problem on the Developer version.
When I try to Load AE on the CVD (Development Version) I get this error
When I try to load : AggregatePlaintextProcessor.xml
I get Error : org.apache.uima.resource.ResourceInitializationException: More
detailed information in the log file
When I try to load : AggregatePlaintextFastUMLSProcessor.xml
I get Error : org.apache.uima.resource.ResourceInitializationException: an
import could not be resolved. No file with name
"org/apache/ctakes/drugner/types/TypeSystem.xml" was found in the class path
or data path
(Descriptor:file:/D:/cTAKES/ctakes-drug-ner/desc/analysis_engine/DrugMentionAnnotator.xml)
More detailed information in the log file
P.S. I changed CTAKES_HOME to D:\cTAKES which is the development folder that
has all code)
How can I fix that?
=================================================Error 1:
<date>2019-12-15T22:23:11</date> <millis>1576408991483</millis>
<sequence>7</sequence> <logger>org.apache.uima</logger> <level>SEVERE</level>
<class>org.apache.uima.tools.cvd.MainFrame</class>
<method>handleException(527)</method> <thread>24</thread> <message>Exception
occurred</message> <exception>
<message>org.apache.uima.resource.ResourceInitializationException</message>
<frame>
<class>org.apache.ctakes.core.resource.LuceneIndexReaderResourceImpl</class>
<method>load</method> <line>82</line> </frame>
=================================================Error 2:
<date>2019-12-15T22:32:54</date> <millis>1576409574952</millis>
<sequence>9</sequence> <logger>org.apache.uima</logger> <level>SEVERE</level>
<class>org.apache.uima.tools.cvd.MainFrame</class>
<method>handleException(527)</method> <thread>24</thread> <message>An import
could not be resolved. No file with name
"org/apache/ctakes/drugner/types/TypeSystem.xml" was found in the class path or
data path. (Descriptor:
file:/J:/__cTAKES/ctakes-drug-ner/desc/analysis_engine/DrugMentionAnnotator.xml)</message>
<exception>
<message>org.apache.uima.resource.ResourceInitializationException: An import
could not be resolved. No file with name
"org/apache/ctakes/drugner/types/TypeSystem.xml" was found in the class path or
data path. (Descriptor:
file:/J:/__cTAKES/ctakes-drug-ner/desc/analysis_engine/DrugMentionAnnotator.xml)</message>
<frame>
<class>org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl</class>
<method>initialize</method> <line>165</line> </frame> <frame>
<class>org.apache.uima.impl.AnalysisEngineFactory_impl</class>
<method>produceResource</method> <line>94</line> </frame>
On Sunday, 15 December 2019, 05:46:24 pm AEDT, gandhi rajan
<[email protected]> wrote:
Hi Akram,
I would prefer to have a look at the following link:
https://cwiki.apache.org/confluence/display/CTAKES/cTAKES+4.0+User+Install+Guide
And for loading custom dictionaries you gotta look at the following link:
https://cwiki.apache.org/confluence/display/CTAKES/cTAKES+4.0+Dictionaries+and+Models
On Sun, Dec 15, 2019 at 9:19 AM Akram <[email protected]> wrote:
> Hi
> I have 2 questions, and would appreciate the help.
> The first question
> ==================
> I have been trying to get how cTAKES work and not so much luck
> I know that we build .piper file through "cTAKES Simple Pipeline
> Fabricator"
> we get a .piper file
> Then the process is not clear
> my understanding and I am not sure if I am right here
> is that we create a .xml file from the .piper file through
> I tried using "cTAKES Pipe File Submitter"
> I loaded HelloWorld.piper but I got this error
> org.apache.uima.resource.ResourceInitializationException: MESSAGE
> LOCALIZATION FAILED: Can't find resource for bundle
> java.util.PropertyResourceBundle, key No Analysis Component found for
> ContextDependentTokenizerAnnotator
> I read Sean's email in the mail archive
> and Replaced
> add ContextDependentTokenizerAnnotator
> with
> add org.apache.ctakes.contexttokenizer.ae
> .ContextDependentTokenizerAnnotator
> but still getting the same error
>
> The 2nd question
> ===============
> After creating the .xml the next step will be
> Loading the result file in the "CAS Visual Debugger (CVD)"
> and build .xmi file
> but what is next?
> How can I view the the NER values? and where is the coloured screen that
> highlight each token in a colour and each NER in a different colour?
> and where I train cTAKES to take ICD10 or SNOMED or any other dataset?
>
>
--
Regards,
Gandhi
"The best way to find urself is to lose urself in the service of others !!!"
