Without a little more information I cannot tell you exactly why you are getting 
that exact error.

ctakes 4.0.0.1 was built with UIMA v2.  Trying to use a newer version of uima 
and/or uimafit will (frequently) not work.

Any declared dependency on ctakes, such as you have for core and 
clinical-pipeline (which includes core) will import the required uima, uimafit 
and other dependencies.  No additional declaration of dependency is required.

If you absolutely require uima 3 for some reason then I don't think that I can 
help you.  You may want to ask the uima lists about mixing versions or 
equivalent v2 solutions for your goals.

Sean


________________________________________
From: Benjamin hansen <benjaminkakke...@gmail.com>
Sent: Tuesday, August 17, 2021 3:35 PM
To: dev@ctakes.apache.org
Subject: UIMA version 3 or later JCas required [EXTERNAL]

* External Email - Caution *


Hello, I am trying to compile some of the examples from the ctakes example
directory using maven. Specifically I am trying to compile the example
called: HelloWorldAggregatePipeline

I am using ctakes v. 4.0.0.1 and uima fit v. 3.0.2 and i am getting the
following error when i run

mvn package

and then

mvn exec:java -Dexec.mainClass=com.myproj.app.HelloWorldAggregatePipeline



Caused by: org.apache.uima.cas.CASRuntimeException: The JCas cannot be
initialized.  The following errors occurred:

JCas Class "org.apache.uima.jcas.tcas.DocumentAnnotation", loaded from
"jar:file:/Users/myuser/.m2/repository/org/apache/uima/uimaj-document-annotation/2.9.0/uimaj-document-annotation-2.9.0.jar!/org/apache/uima/jcas/tcas/DocumentAnnotation.class",
is missing required constructor; likely cause is wrong version (UIMA
version 3 or later JCas required).


I don't understand why i am getting this error when i am using uima fit v.
3.0.2.

My pom.xml file is seen below


Can anyone help me fix this please?





<?xml version="1.0" encoding="UTF-8"?>

<project 
xmlns="https://urldefense.com/v3/__http://maven.apache.org/POM/4.0.0__;!!NZvER7FxgEiBAiR_!_gz7tElyeaTShAFytscJFcJGhRYag_Hgp1bdGfI1KSmdRS05tiRrLBFBwlbg_S6zR_NKwy3Wlow$
 " xmlns:xsi="
https://urldefense.com/v3/__http://www.w3.org/2001/XMLSchema-instance__;!!NZvER7FxgEiBAiR_!_gz7tElyeaTShAFytscJFcJGhRYag_Hgp1bdGfI1KSmdRS05tiRrLBFBwlbg_S6zR_NKjIAjSAA$
 " xsi:schemaLocation="
https://urldefense.com/v3/__http://maven.apache.org/POM/4.0.0__;!!NZvER7FxgEiBAiR_!_gz7tElyeaTShAFytscJFcJGhRYag_Hgp1bdGfI1KSmdRS05tiRrLBFBwlbg_S6zR_NKwy3Wlow$
https://urldefense.com/v3/__http://maven.apache.org/xsd/maven-4.0.0.xsd__;!!NZvER7FxgEiBAiR_!_gz7tElyeaTShAFytscJFcJGhRYag_Hgp1bdGfI1KSmdRS05tiRrLBFBwlbg_S6zR_NKdagS9L8$
 ">
  <modelVersion>4.0.0</modelVersion>

  <groupId>com.myproj.app</groupId>
  <artifactId>myproj</artifactId>
  <version>1.0-SNAPSHOT</version>

  <name>myproj</name>
  <!-- FIXME change it to the project's website -->
  
<url>https://urldefense.com/v3/__http://www.example.com__;!!NZvER7FxgEiBAiR_!_gz7tElyeaTShAFytscJFcJGhRYag_Hgp1bdGfI1KSmdRS05tiRrLBFBwlbg_S6zR_NKGoYVPsc$
 </url>

  <properties>
    <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
    <maven.compiler.source>1.7</maven.compiler.source>
    <maven.compiler.target>1.7</maven.compiler.target>
  </properties>

  <dependencies>
    <dependency>
      <groupId>junit</groupId>
      <artifactId>junit</artifactId>
      <version>4.11</version>
      <scope>test</scope>
    </dependency>
    <!-- 
https://urldefense.com/v3/__https://mvnrepository.com/artifact/org.apache.uima/uimaj-core__;!!NZvER7FxgEiBAiR_!_gz7tElyeaTShAFytscJFcJGhRYag_Hgp1bdGfI1KSmdRS05tiRrLBFBwlbg_S6zR_NKtcT3VO8$
  -->
    <dependency>
      <groupId>org.apache.uima</groupId>
      <artifactId>uimaj-core</artifactId>
      <version>3.2.0</version>
    </dependency>
    <!-- 
https://urldefense.com/v3/__https://mvnrepository.com/artifact/org.apache.uima/uimafit-core__;!!NZvER7FxgEiBAiR_!_gz7tElyeaTShAFytscJFcJGhRYag_Hgp1bdGfI1KSmdRS05tiRrLBFBwlbg_S6zR_NKQTS5428$
  -->
    <dependency>
      <groupId>org.apache.uima</groupId>
      <artifactId>uimafit-core</artifactId>
      <version>3.2.0</version>
    </dependency>
    <!-- 
https://urldefense.com/v3/__https://mvnrepository.com/artifact/org.apache.ctakes/ctakes-core__;!!NZvER7FxgEiBAiR_!_gz7tElyeaTShAFytscJFcJGhRYag_Hgp1bdGfI1KSmdRS05tiRrLBFBwlbg_S6zR_NKBS6M3xE$
-->
    <dependency>
      <groupId>org.apache.ctakes</groupId>
      <artifactId>ctakes-core</artifactId>
      <version>4.0.0.1</version>
    </dependency>
    <!--
https://urldefense.com/v3/__https://mvnrepository.com/artifact/org.apache.ctakes/ctakes-clinical-pipeline__;!!NZvER7FxgEiBAiR_!_gz7tElyeaTShAFytscJFcJGhRYag_Hgp1bdGfI1KSmdRS05tiRrLBFBwlbg_S6zR_NKXF3_mtI$
-->
    <dependency>
      <groupId>org.apache.ctakes</groupId>
      <artifactId>ctakes-clinical-pipeline</artifactId>
      <version>4.0.0.1</version>
    </dependency>

  </dependencies>

  <build>
    <pluginManagement>
      <!-- lock down plugins versions to avoid using Maven defaults (may be
moved to parent pom) -->
      <plugins>
        <!-- clean lifecycle, see
https://urldefense.com/v3/__https://maven.apache.org/ref/current/maven-core/lifecycles.html*clean_Lifecycle__;Iw!!NZvER7FxgEiBAiR_!_gz7tElyeaTShAFytscJFcJGhRYag_Hgp1bdGfI1KSmdRS05tiRrLBFBwlbg_S6zR_NKt7T4VXw$
-->
        <plugin>
          <artifactId>maven-clean-plugin</artifactId>
          <version>3.1.0</version>
        </plugin>
        <!-- default lifecycle, jar packaging: see
https://urldefense.com/v3/__https://maven.apache.org/ref/current/maven-core/default-bindings.html*Plugin_bindings_for_jar_packaging__;Iw!!NZvER7FxgEiBAiR_!_gz7tElyeaTShAFytscJFcJGhRYag_Hgp1bdGfI1KSmdRS05tiRrLBFBwlbg_S6zR_NKvGrH6DM$
-->
        <plugin>
          <artifactId>maven-resources-plugin</artifactId>
          <version>3.0.2</version>
        </plugin>
        <plugin>
          <artifactId>maven-compiler-plugin</artifactId>
          <version>3.8.0</version>
        </plugin>
        <plugin>
          <artifactId>maven-surefire-plugin</artifactId>
          <version>2.22.1</version>
        </plugin>
        <plugin>
          <artifactId>maven-jar-plugin</artifactId>
          <version>3.0.2</version>
        </plugin>
        <plugin>
          <artifactId>maven-install-plugin</artifactId>
          <version>2.5.2</version>
        </plugin>
        <plugin>
          <artifactId>maven-deploy-plugin</artifactId>
          <version>2.8.2</version>
        </plugin>
        <!-- site lifecycle, see
https://urldefense.com/v3/__https://maven.apache.org/ref/current/maven-core/lifecycles.html*site_Lifecycle__;Iw!!NZvER7FxgEiBAiR_!_gz7tElyeaTShAFytscJFcJGhRYag_Hgp1bdGfI1KSmdRS05tiRrLBFBwlbg_S6zR_NKzaG43js$
-->
        <plugin>
          <artifactId>maven-site-plugin</artifactId>
          <version>3.7.1</version>
        </plugin>
        <plugin>
          <artifactId>maven-project-info-reports-plugin</artifactId>
          <version>3.0.0</version>
        </plugin>
      </plugins>
    </pluginManagement>
  </build>
</project>

Reply via email to