I recently posted an updated 2021AA UMLS file to the ctakes resource sourceforge repo: https://sourceforge.net/projects/ctakesresources/files/
which should be a drop-in replacement for the version included in the last ctakes release. If you extract this new file in the same directory as your release version, this container setup is an example of how to download and where to put the file: https://github.com/Machine-Learning-for-Medical-Language/ctakes-rest-package/blob/master/Dockerfile and it references the upgrade of the dictionary descriptor here: https://github.com/Machine-Learning-for-Medical-Language/ctakes-rest-package/blob/master/customDictionary.xml Tim On Tue, 2022-01-18 at 16:52 +0000, Shyam Bhimani wrote: * External Email - Caution * Peter, Appreciate your response. Shyam Bhimani CONFIDENTIALITY NOTICE: The contents of this email message and any attachments are intended solely for the addressee(s) and may contain confidential and/or privileged information and may be legally protected from disclosure. -----Original Message----- From: Peter Abramowitsch < <mailto:pabramowit...@gmail.com> pabramowit...@gmail.com > Sent: Tuesday, January 18, 2022 9:19 AM To: <mailto:dev@ctakes.apache.org> dev@ctakes.apache.org Subject: Re: Ctakes + UMLS dictionary ** WARNING: This email originated from outside of Target RWE. ** As distributed, it contains the mappings of cuis to 2015 snomed and rxnorm vocabularies. It does not contain ICD 9 or 10 mappings. But creating a custom dictionary is a normal aspect of any serious installation. This is how you can incorporate more recent versions of the umls and other vocabularies. See the ctakes dictionary creator for more information. On Tue, Jan 18, 2022, 7:36 AM Shyam Bhimani < <mailto:sbhim...@targetrwe.com> sbhim...@targetrwe.com > wrote: Hello, When I dig little deep I found below information on cTAKES wiki. Does it mean default clinical pipeline uses 2015 version of SNOWMED, RxNorm, ICD9, ICD10? Please advise. Shyam Bhimani *From:* Shyam Bhimani < <mailto:sbhim...@targetrwe.com> sbhim...@targetrwe.com > *Sent:* Thursday, January 13, 2022 8:10 PM *To:* <mailto:dev@ctakes.apache.org> dev@ctakes.apache.org *Subject:* Ctakes + UMLS dictionary *** **WARNING:* This email originated from outside of Target RWE. **** Hello, I am new to cTAKES and having hard time understanding what year/version dictionary (SNOMED-CT, RxNorm, ICD9 etc) is being used by ctakes default clinical pipeline? I have some medication names that are not being picked up by cTAKES eg dupilumab, dupixent so I am trying to understand why. Please advise. 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