mcgrawia opened a new issue, #43:
URL: https://github.com/apache/datasketches-python/issues/43
Hi datasketch team,
Thank you for the awesome library! My team and I ran into an issue while
attempting to install the `datasketches-python` package in an alpine linux
docker container. I am a bit stumped as the problem appears to be related to
the `prepare_numpy()` function, but as far as I can tell, I am using the same
numpy version that was used when building the wheel files for other
distributions. At its core, the error seems to be `error: cannot convert
'std::nullptr_t' to 'int' in return`. Does anyone have any tips for how I can
resolve this build issue? I've attached the error and a sample Dockerfile below
if it helps.
Thanks
**Sample Dockerfile**
```dockerfile
FROM python:3.12-alpine
# install build deps
RUN apk add --no-cache make cmake g++ git
RUN pip3 install --no-cache-dir datasketches~=5.0
```
**Error:**
```
... lots of warnings
/tmp/pip-build-env-ihc_qezq/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2:
warning: #warning "Using deprecated NumPy API, disable it with " "#define
NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
In file included from /usr/include/c++/13.2.1/cstring:42,
from
/tmp/datasketches/include/DataSketches/memory_operations.hpp:27,
from
/tmp/datasketches/include/DataSketches/density_sketch_impl.hpp:26,
from
/tmp/datasketches/include/DataSketches/density_sketch.hpp:254,
from
/tmp/pip-install-xb49diqe/datasketches_8f31c08a390743fd9e84ba03778a8c57/src/density_wrapper.cpp:33:
/tmp/pip-install-xb49diqe/datasketches_8f31c08a390743fd9e84ba03778a8c57/src/density_wrapper.cpp:
In function 'int prepare_numpy()':
error seems to be here ->
/tmp/pip-build-env-ihc_qezq/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/__multiarray_api.h:1558:151:
error: cannot convert 'std::nullptr_t' to 'int' in return
1558 | #define import_array() {if (_import_array() < 0)
{PyErr_Print(); PyErr_SetString(PyExc_ImportError, "numpy.core.multiarray
failed to import"); return NULL; } }
|
^~~~
/tmp/pip-install-xb49diqe/datasketches_8f31c08a390743fd9e84ba03778a8c57/src/density_wrapper.cpp:101:3:
note: in expansion of macro 'import_array'
101 | import_array();
| ^~~~~~~~~~~~
In file included from
/tmp/pip-build-env-ihc_qezq/overlay/lib/python3.12/site-packages/nanobind/include/nanobind/nanobind.h:48,
from
/tmp/pip-install-xb49diqe/datasketches_8f31c08a390743fd9e84ba03778a8c57/src/density_wrapper.cpp:22:
/tmp/pip-build-env-ihc_qezq/overlay/lib/python3.12/site-packages/nanobind/include/nanobind/nb_attr.h:
In instantiation of 'struct nanobind::detail::func_data_prelim<0>':
/tmp/pip-build-env-ihc_qezq/overlay/lib/python3.12/site-packages/nanobind/include/nanobind/nb_func.h:95:38:
required from 'PyObject* nanobind::detail::func_create(Func&&, Return
(*)(Args ...), std::index_sequence<Is2 ...>, const Extra& ...) [with bool
ReturnRef = false; bool CheckGuard = true; Func = bind_density_sketch<double,
datasketches::kernel_function_holder>(nanobind::module_&, const
char*)::<lambda(const datasketches::density_sketch<double,
datasketches::kernel_function_holder, std::allocator<double> >&)>; Return =
datasketches::density_sketch<double, datasketches::kernel_function_holder,
std::allocator<double> >; Args = {const datasketches::density_sketch<double,
datasketches::kernel_function_holder, std::allocator<double> >&}; long unsigned
int ...Is = {0}; Extra = {nanobind::scope, nanobind::name,
nanobind::is_method}; PyObject = _object; std::index_sequence<Is2 ...> =
std::integer_sequence<long unsigned int, 0>]'
/tmp/pip-build-env-ihc_qezq/overlay/lib/python3.12/site-packages/nanobind/include/nanobind/nb_func.h:207:37:
required from 'void nanobind::cpp_function_def(Func&&, const Extra& ...)
[with Func = bind_density_sketch<double,
datasketches::kernel_function_holder>(nanobind::module_&, const
char*)::<lambda(const datasketches::density_sketch<double,
datasketches::kernel_function_holder, std::allocator<double> >&)>; Extra =
{scope, name, is_method}; typename std::enable_if<is_lambda_v<typename
std::remove_reference<_Tp>::type>, int>::type <anonymous> = 0]'
/tmp/pip-build-env-ihc_qezq/overlay/lib/python3.12/site-packages/nanobind/include/nanobind/nb_class.h:453:25:
required from 'nanobind::class_<T, Ts>& nanobind::class_<T, Ts>::def(const
char*, Func&&, const Extra& ...) [with Func = bind_density_sketch<double,
datasketches::kernel_function_holder>(nanobind::module_&, const
char*)::<lambda(const datasketches::density_sketch<double,
datasketches::kernel_function_holder, std::allocator<double> >&)>; Extra = {};
T = datasketches::density_sketch<double, datasketches::kernel_function_holder,
std::allocator<double> >; Ts = {}]'
/tmp/pip-install-xb49diqe/datasketches_8f31c08a390743fd9e84ba03778a8c57/src/density_wrapper.cpp:52:9:
required from 'void bind_density_sketch(nanobind::module_&, const char*)
[with T = double; K = datasketches::kernel_function_holder]'
/tmp/pip-install-xb49diqe/datasketches_8f31c08a390743fd9e84ba03778a8c57/src/density_wrapper.cpp:127:54:
required from here
/tmp/pip-build-env-ihc_qezq/overlay/lib/python3.12/site-packages/nanobind/include/nanobind/nb_attr.h:192:14:
warning: ISO C++ forbids zero-size array [-Wpedantic]
192 | arg_data args[Size];
| ^~~~
gmake[3]: *** [CMakeFiles/python.dir/build.make:230:
CMakeFiles/python.dir/src/density_wrapper.cpp.o] Error 1
gmake[3]: *** Waiting for unfinished jobs....
gmake[2]: *** [CMakeFiles/Makefile2:87: CMakeFiles/python.dir/all]
Error 2
gmake[1]: *** [CMakeFiles/Makefile2:94: CMakeFiles/python.dir/rule]
Error 2
gmake: *** [Makefile:124: python] Error 2
Traceback (most recent call last):
File
"/usr/local/lib/python3.12/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py",
line 353, in <module>
main()
File
"/usr/local/lib/python3.12/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py",
line 335, in main
json_out['return_val'] = hook(**hook_input['kwargs'])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/usr/local/lib/python3.12/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py",
line 251, in build_wheel
return _build_backend().build_wheel(wheel_directory,
config_settings,
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/tmp/pip-build-env-ihc_qezq/overlay/lib/python3.12/site-packages/setuptools/build_meta.py",
line 410, in build_wheel
return self._build_with_temp_dir(
^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/tmp/pip-build-env-ihc_qezq/overlay/lib/python3.12/site-packages/setuptools/build_meta.py",
line 395, in _build_with_temp_dir
self.run_setup()
File
"/tmp/pip-build-env-ihc_qezq/overlay/lib/python3.12/site-packages/setuptools/build_meta.py",
line 311, in run_setup
exec(code, locals())
File "<string>", line 92, in <module>
File
"/tmp/pip-build-env-ihc_qezq/overlay/lib/python3.12/site-packages/setuptools/__init__.py",
line 104, in setup
return distutils.core.setup(**attrs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/tmp/pip-build-env-ihc_qezq/overlay/lib/python3.12/site-packages/setuptools/_distutils/core.py",
line 185, in setup
return run_commands(dist)
^^^^^^^^^^^^^^^^^^
File
"/tmp/pip-build-env-ihc_qezq/overlay/lib/python3.12/site-packages/setuptools/_distutils/core.py",
line 201, in run_commands
dist.run_commands()
File
"/tmp/pip-build-env-ihc_qezq/overlay/lib/python3.12/site-packages/setuptools/_distutils/dist.py",
line 969, in run_commands
self.run_command(cmd)
File
"/tmp/pip-build-env-ihc_qezq/overlay/lib/python3.12/site-packages/setuptools/dist.py",
line 967, in run_command
super().run_command(command)
File
"/tmp/pip-build-env-ihc_qezq/overlay/lib/python3.12/site-packages/setuptools/_distutils/dist.py",
line 988, in run_command
cmd_obj.run()
File
"/tmp/pip-build-env-ihc_qezq/overlay/lib/python3.12/site-packages/wheel/bdist_wheel.py",
line 368, in run
self.run_command("build")
File
"/tmp/pip-build-env-ihc_qezq/overlay/lib/python3.12/site-packages/setuptools/_distutils/cmd.py",
line 318, in run_command
self.distribution.run_command(command)
File
"/tmp/pip-build-env-ihc_qezq/overlay/lib/python3.12/site-packages/setuptools/dist.py",
line 967, in run_command
super().run_command(command)
File
"/tmp/pip-build-env-ihc_qezq/overlay/lib/python3.12/site-packages/setuptools/_distutils/dist.py",
line 988, in run_command
cmd_obj.run()
File
"/tmp/pip-build-env-ihc_qezq/overlay/lib/python3.12/site-packages/setuptools/_distutils/command/build.py",
line 131, in run
self.run_command(cmd_name)
File
"/tmp/pip-build-env-ihc_qezq/overlay/lib/python3.12/site-packages/setuptools/_distutils/cmd.py",
line 318, in run_command
self.distribution.run_command(command)
File
"/tmp/pip-build-env-ihc_qezq/overlay/lib/python3.12/site-packages/setuptools/dist.py",
line 967, in run_command
super().run_command(command)
File
"/tmp/pip-build-env-ihc_qezq/overlay/lib/python3.12/site-packages/setuptools/_distutils/dist.py",
line 988, in run_command
cmd_obj.run()
File "<string>", line 46, in run
File "<string>", line 78, in build_extension
File "/usr/local/lib/python3.12/subprocess.py", line 413, in
check_call
raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command '['cmake', '--build', '.',
'--target', 'python', '--config', 'Release', '--', '-j2']' returned non-zero
exit status 2.
[end of output]
note: This error originates from a subprocess, and is likely not a problem
with pip.
ERROR: Failed building wheel for datasketches
Failed to build datasketches
ERROR: Could not build wheels for datasketches, which is required to install
pyproject.toml-based projects
```
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