Max Garmash created GIRAPH-1026:
-----------------------------------
Summary: New Out-of-core mechanism does not work
Key: GIRAPH-1026
URL: https://issues.apache.org/jira/browse/GIRAPH-1026
Project: Giraph
Issue Type: Bug
Reporter: Max Garmash
After releasing new OOC mechanism we tried to test it on our data and it failed.
Our environment:
4x (CPU 6 cores / 12 threads, RAM 64GB)
We can successfully process about 75 millions of vertices.
With 100-120M vertices it fails like this:
2015-08-04 12:35:21,000 INFO [AMRM Callback Handler Thread]
yarn.GiraphApplicationMaster
(GiraphApplicationMaster.java:onContainersCompleted(574)) - Got container
status for containerID=container_1438068521412_0193_01_000005, state=COMPLETE,
exitStatus=-104, diagnostics=Container
[pid=6700,containerID=container_1438068521412_0193_01_000005] is running beyond
physical memory limits. Current usage: 20.3 GB of 20 GB physical memory used;
22.4 GB of 42 GB virtual memory used. Killing container.
Dump of the process-tree for container_1438068521412_0193_01_000005 :
|- PID PPID PGRPID SESSID CMD_NAME USER_MODE_TIME(MILLIS)
SYSTEM_TIME(MILLIS) VMEM_USAGE(BYTES) RSSMEM_USAGE(PAGES) FULL_CMD_LINE
|- 6704 6700 6700 6700 (java) 78760 20733 24033841152 5317812 java
-Xmx20480M -Xms20480M -cp
.:${CLASSPATH}:./*:$HADOOP_CLIENT_CONF_DIR:$HADOOP_CONF_DIR:$HADOOP_COMMON_HOME/*:$HADOOP_COMMON_HOME/lib/*:$HADOOP_HDFS_HOME/*:$HADOOP_HDFS_HOME/lib/*:$HADOOP_YARN_HOME/*:$HADOOP_YARN_HOME/lib/*:$HADOOP_MAPRED_HOME/*:$HADOOP_MAPRED_HOME/lib/*:$MR2_CLASSPATH:./*:/etc/hadoop/conf.cloudera.yarn:/run/cloudera-scm-agent/process/264-yarn-NODEMANAGER:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop/*:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop/lib/*:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop-hdfs/*:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop-hdfs/lib/*:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop-yarn/*:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop-yarn/lib/*:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop-mapreduce/*:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop-mapreduce/lib/*::./*:/etc/hadoop/conf.cloudera.yarn:/run/cloudera-scm-agent/process/264-yarn-NODEMANAGER:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop/*:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop/lib/*:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop-hdfs/*:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop-hdfs/lib/*:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop-yarn/*:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop-yarn/lib/*:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop-mapreduce/*:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop-mapreduce/lib/*::./*:/etc/hadoop/conf.cloudera.yarn:/run/cloudera-scm-agent/process/264-yarn-NODEMANAGER:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop/*:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop/lib/*:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop-hdfs/*:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop-hdfs/lib/*:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop-yarn/*:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop-yarn/lib/*:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop-mapreduce/*:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop-mapreduce/lib/*:
org.apache.giraph.yarn.GiraphYarnTask 1438068521412 193 5 1
|- 6700 6698 6700 6700 (bash) 0 0 14376960 433 /bin/bash -c java
-Xmx20480M -Xms20480M -cp
.:${CLASSPATH}:./*:$HADOOP_CLIENT_CONF_DIR:$HADOOP_CONF_DIR:$HADOOP_COMMON_HOME/*:$HADOOP_COMMON_HOME/lib/*:$HADOOP_HDFS_HOME/*:$HADOOP_HDFS_HOME/lib/*:$HADOOP_YARN_HOME/*:$HADOOP_YARN_HOME/lib/*:$HADOOP_MAPRED_HOME/*:$HADOOP_MAPRED_HOME/lib/*:$MR2_CLASSPATH:./*:/etc/hadoop/conf.cloudera.yarn:/run/cloudera-scm-agent/process/264-yarn-NODEMANAGER:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop/*:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop/lib/*:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop-hdfs/*:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop-hdfs/lib/*:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop-yarn/*:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop-yarn/lib/*:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop-mapreduce/*:/opt/cloudera/parcels/CDH-5.4.4-1.cdh5.4.4.p0.4/lib/hadoop-mapreduce/lib/*:
org.apache.giraph.yarn.GiraphYarnTask 1438068521412 193 5 1
1>/var/log/hadoop-yarn/container/application_1438068521412_0193/container_1438068521412_0193_01_000005/task-5-stdout.log
2>/var/log/hadoop-yarn/container/application_1438068521412_0193/container_1438068521412_0193_01_000005/task-5-stderr.log
Container killed on request. Exit code is 143
Container exited with a non-zero exit code 143
Logs from container
2015-08-04 12:34:51,258 INFO [netty-server-worker-4] handler.RequestDecoder
(RequestDecoder.java:channelRead(74)) - decode: Server window metrics
MBytes/sec received = 12.5315, MBytesReceived = 380.217, ave received req
MBytes = 0.007, secs waited = 30.34
2015-08-04 12:35:16,258 INFO [check-memory] ooc.CheckMemoryCallable
(CheckMemoryCallable.java:call(221)) - call: Memory is very limited now.
Calling GC manually. freeMemory = 924.27MB
--
This message was sent by Atlassian JIRA
(v6.3.4#6332)
