Github user ajs6f commented on a diff in the pull request:

    https://github.com/apache/jena/pull/108#discussion_r47445042
  
    --- Diff: 
jena-arq/src/main/java/org/apache/jena/sparql/core/mem/DatasetGraphInMemory.java
 ---
    @@ -125,57 +115,104 @@ public DatasetGraphInMemory(final QuadTable i, final 
TripleTable t) {
     
         @Override
         public void begin(final ReadWrite readWrite) {
    -        if (isInTransaction()) throw new 
JenaTransactionException("Transactions cannot be nested!");
    -        transactionType(readWrite);
    -        isInTransaction(true);
    -        writeLock().enterCriticalSection(readWrite.equals(READ)); // get 
the dataset write lock, if needed.
    -        commitLock().readLock().lock(); // if a commit is proceeding, wait 
so that we see a coherent index state
    -        try {
    +        if (isInTransaction()) 
    +            throw new JenaTransactionException("Transactions cannot be 
nested!");
    +        startTransaction(readWrite) ;
    +        _begin(readWrite) ;
    +    }
    +
    +    private void _begin(ReadWrite readWrite) {
    +        withLock(systemLock, () ->{
                 quadsIndex().begin(readWrite);
                 defaultGraph().begin(readWrite);
    -        } finally {
    -            commitLock().readLock().unlock();
    -        }
    +        }) ;
    +    }
    +    
    +    /** Called transaction start code at most once per transaction. */ 
    +    private void startTransaction(ReadWrite mode) {
    +        writeLock.enterCriticalSection(mode.equals(READ)); // get the 
dataset write lock, if needed.
    +        transactionType(mode);
    +        isInTransaction(true);
         }
     
    +    /** Called transaction ending code at most once per transaction. */ 
    +    private void finishTransaction() {
    +        isInTransaction.remove();
    +        transactionType.remove();
    +        writeLock.leaveCriticalSection();
    +    }
    +     
         @Override
         public void commit() {
    -        if (!isInTransaction()) throw new JenaTransactionException("Tried 
to commit outside a transaction!");
    -        commitLock().writeLock().lock();
    -        try {
    +        if (!isInTransaction())
    +            throw new JenaTransactionException("Tried to commit outside a 
transaction!");
    +        if (transactionType().equals(WRITE))
    +            _commit();
    +        finishTransaction();
    +    }
    +
    +    private void _commit() {
    +        withLock(systemLock, () -> {
                 quadsIndex().commit();
                 defaultGraph().commit();
    -        } finally {
    -            commitLock().writeLock().unlock();
    -        }
    -        isInTransaction.remove();
    -        writeLock().leaveCriticalSection();
    +            quadsIndex().end();
    +            defaultGraph().end();
    +        } ) ;
         }
    -
    +    
         @Override
         public void abort() {
    -        if (!isInTransaction()) throw new JenaTransactionException("Tried 
to abort outside a transaction!");
    -        end();
    +        if (!isInTransaction()) 
    +            throw new JenaTransactionException("Tried to abort outside a 
transaction!");
    +        if (transactionType().equals(WRITE))
    +            _abort();
    +        finishTransaction();
         }
     
    +    private void _abort() {
    +        withLock(systemLock, () -> {
    +            quadsIndex().abort();
    +            defaultGraph().abort();
    +            quadsIndex().end();
    +            defaultGraph().end();
    +        } ) ;
    +    }
    +    
         @Override
         public void close() {
    -        if (isInTransaction()) abort();
    +        if (isInTransaction())
    +            abort();
         }
     
         @Override
         public void end() {
             if (isInTransaction()) {
    -            if (transactionType().equals(WRITE))
    -                log.warn("end() called for WRITE transaction without 
commit or abort having been called");
    +            if (transactionType().equals(WRITE)) {
    +                log.warn("end() called for WRITE transaction without 
commit or abort having been called causing a forced abort");
    --- End diff --
    
    This message is a tiny bit ambiguous if you don't already understand that 
`end` calls `_abort`. Maybe just add a sentence break: `"end() called for WRITE 
transaction without commit or abort having been called. This causes a forced 
abort!"`


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