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https://issues.apache.org/jira/browse/KAFKA-3323?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=15185488#comment-15185488
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Michael Schiff edited comment on KAFKA-3323 at 3/8/16 6:52 PM:
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[~ijuma] Yes, it is a duplicate.  The accepted solution was the first one I 
mentioned in my comment: group segments to clean by segment size in bytes *and* 
by limiting the difference between the segment base offset and the max offset 
that goes into it.

This however does not address the already broken log segments that I (and 
others) may have in production.  For this I have written a utility to split log 
segments into legal chunks.  If this seems useful I can submit it as a patch.


was (Author: michael.schiff):
[~ijuma] Yes, it is a duplicate.  The accepted solution was the first one I 
mentioned in my comment: group segments to clean, by segment size in bytes and 
by limiting the difference between the segment base offset and the max offset 
that goes into it.

This however does not address the already broken log segments that I (and 
others) may have in production.  For this I have written a utility to split log 
segments into legal chunks.  If this seems useful I can submit it as a patch.

> Negative offsets in Log Segment Index files due to Integer overflow when 
> compaction is enabled 
> -----------------------------------------------------------------------------------------------
>
>                 Key: KAFKA-3323
>                 URL: https://issues.apache.org/jira/browse/KAFKA-3323
>             Project: Kafka
>          Issue Type: Bug
>          Components: log
>    Affects Versions: 0.8.1.1
>            Reporter: Michael Schiff
>            Assignee: Jay Kreps
>         Attachments: index_dump.txt, log_dump.txt
>
>
> Once the Offset Index has negative offset values, the binary search for 
> position lookup is broken. This causes consumers of compact topics to skip 
> large offset intervals when bootstrapping.  This has serious implications for 
> consumers of compact topics.
> {code}
>  /**
>    * Append an entry for the given offset/location pair to the index. This 
> entry must have a larger offset than all subsequent entries.
>    */
>   def append(offset: Long, position: Int) {
>     inLock(lock) {
>       require(!isFull, "Attempt to append to a full index (size = " + size + 
> ").")
>       if (size.get == 0 || offset > lastOffset) {
>         debug("Adding index entry %d => %d to %s.".format(offset, position, 
> file.getName))
>         this.mmap.putInt((offset - baseOffset).toInt)
>         this.mmap.putInt(position)
>         this.size.incrementAndGet()
>         this.lastOffset = offset
>         require(entries * 8 == mmap.position, entries + " entries but file 
> position in index is " + mmap.position + ".")
>       } else {
>         throw new InvalidOffsetException("Attempt to append an offset (%d) to 
> position %d no larger than the last offset appended (%d) to %s."
>           .format(offset, entries, lastOffset, file.getAbsolutePath))
>       }
>     }
>   }
> {code}
> OffsetIndex.append assumes that (offset - baseOffset) can be represented as 
> an integer without overflow. If the LogSegment is from a compacted topic, 
> this assumption may not be valid. The result is a quiet integer overflow, 
> which stores a negative value into the index.
> I believe that the issue is caused by the LogCleaner. Specifically, by the 
> groupings produced by 
> {code}
> /**
>    * Group the segments in a log into groups totaling less than a given size. 
> the size is enforced separately for the log data and the index data.
>    * We collect a group of such segments together into a single
>    * destination segment. This prevents segment sizes from shrinking too much.
>    *
>    * @param segments The log segments to group
>    * @param maxSize the maximum size in bytes for the total of all log data 
> in a group
>    * @param maxIndexSize the maximum size in bytes for the total of all index 
> data in a group
>    *
>    * @return A list of grouped segments
>    */
>   private[log] def groupSegmentsBySize(segments: Iterable[LogSegment], 
> maxSize: Int, maxIndexSize: Int): List[Seq[LogSegment]]
> {code}
> Since this method is only concerned with grouping by size, without taking 
> baseOffset and groupMaxOffset into account, it will produce groups that when 
> cleaned into a single segment, have offsets that overflow. This is more 
> likely for topics with low key cardinality, but high update volume, as you 
> could wind up with very few cleaned records, but with very high offsets.



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