When solr.xml is persisted, you lose all system property substitution that was 
used. 
-------------------------------------------------------------------------------------

                 Key: SOLR-3137
                 URL: https://issues.apache.org/jira/browse/SOLR-3137
             Project: Solr
          Issue Type: Bug
            Reporter: Mark Miller
            Assignee: Mark Miller
             Fix For: 4.0


A lesser issue is that we also write out properties that where not originally 
in the file with the defaults they picked up.

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