native-maven-plugin does not work with Eclipse Maven workspace resolution: 
"Unable to copy dependency to staging area"
----------------------------------------------------------------------------------------------------------------------

                 Key: MOJO-1535
                 URL: http://jira.codehaus.org/browse/MOJO-1535
             Project: Mojo
          Issue Type: Bug
         Environment: linux-x86-64, sun jdk 1.6.0_20, eclipse with maven2 plugin
            Reporter: Peter De Maeyer


Affects: native-maven-plugin, version 1.0-alpha-5.

I have a project combining some java code and native code through jni.
When running maven "install" target from within eclipse, the linker fails with 
"Unable to copy dependency to stating area".
The reason seems to be that the NativeLinkMojo receives a directory as artifact 
rather than a .jar, and fails on it.
That is of course precisely what workspace resolution is all about: it uses 
directories in the workspace instead as artifacts instead of .jars. It's a 
perfectly valid use case, and plugins should be able to deal with it.

Note that #MOJO-820 is about a similar problem, and is marked as "won't fix", 
but I suggest you reconsider in the context of this new use case.

---
[ERROR] Failed to execute goal 
org.codehaus.mojo:native-maven-plugin:1.0-alpha-5:link (default-link) on 
project libboyermoore: Unable to copy dependency to staging area.  Could not 
copy /home/peter/workspace/de-maeyer/search/impl/target/classes to 
/home/peter/workspace/de-maeyer/search/native/boyer-moore/linux/target/lib/search-impl.jar:
 /home/peter/workspace/de-maeyer/search/impl/target/classes (Is a directory) -> 
[Help 1]
org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal 
org.codehaus.mojo:native-maven-plugin:1.0-alpha-5:link (default-link) on 
project libboyermoore: Unable to copy dependency to staging area.  Could not 
copy /home/peter/workspace/de-maeyer/search/impl/target/classes to 
/home/peter/workspace/de-maeyer/search/native/boyer-moore/linux/target/lib/search-impl.jar
        at 
org.apache.maven.lifecycle.DefaultLifecycleExecutor.execute(DefaultLifecycleExecutor.java:585)
        at 
org.apache.maven.lifecycle.DefaultLifecycleExecutor.execute(DefaultLifecycleExecutor.java:324)
        at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:247)
        at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:104)
        at org.apache.maven.cli.MavenCli.execute(MavenCli.java:427)
        at org.apache.maven.cli.MavenCli.doMain(MavenCli.java:157)
        at org.apache.maven.cli.MavenCli.main(MavenCli.java:121)
        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at 
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
        at 
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
        at java.lang.reflect.Method.invoke(Method.java:597)
        at 
org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced(Launcher.java:290)
        at 
org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:230)
        at 
org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode(Launcher.java:409)
        at 
org.codehaus.plexus.classworlds.launcher.Launcher.main(Launcher.java:352)
Caused by: org.apache.maven.plugin.MojoExecutionException: Unable to copy 
dependency to staging area.  Could not copy 
/home/peter/workspace/de-maeyer/search/impl/target/classes to 
/home/peter/workspace/de-maeyer/search/native/boyer-moore/linux/target/lib/search-impl.jar
        at 
org.codehaus.mojo.natives.plugin.NativeLinkMojo.getDependencyFile(NativeLinkMojo.java:456)
        at 
org.codehaus.mojo.natives.plugin.NativeLinkMojo.getLibFileNames(NativeLinkMojo.java:329)
        at 
org.codehaus.mojo.natives.plugin.NativeLinkMojo.createLinkerConfiguration(NativeLinkMojo.java:220)
        at 
org.codehaus.mojo.natives.plugin.NativeLinkMojo.execute(NativeLinkMojo.java:179)
        at 
org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:105)
        at 
org.apache.maven.lifecycle.DefaultLifecycleExecutor.execute(DefaultLifecycleExecutor.java:577)
        ... 14 more
Caused by: java.io.FileNotFoundException: 
/home/peter/workspace/de-maeyer/search/impl/target/classes (Is a directory)
        at java.io.FileInputStream.open(Native Method)
        at java.io.FileInputStream.<init>(FileInputStream.java:106)
        at 
org.codehaus.plexus.util.io.FileInputStreamFacade.getInputStream(FileInputStreamFacade.java:39)
        at 
org.codehaus.plexus.util.FileUtils.copyStreamToFile(FileUtils.java:1106)
        at org.codehaus.plexus.util.FileUtils.copyFile(FileUtils.java:1013)
        at 
org.codehaus.mojo.natives.plugin.NativeLinkMojo.getDependencyFile(NativeLinkMojo.java:451)

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