Chris, Here is the filemgr.properties deployed by RADIX. I modified slightly for my project. I also verified that FILEMGR_HOME contains valid path. The odd is that I can ingest but I can’t delete. If there is problem with FILEMGR_HOME, then ingest should break too.
I originally could not check for the ingested product (-product -pn) either due to multiple records in the catalog for the same product. I cleaned up the catalog and ingested only one record but I still can’t delete the product. Here is the segment of filemgr.properties. I noticed that lines contain “file:[FILEMGR_HOME]” rather than “file://[FILEMGR_HOME]". # lucene catalog configuration org.apache.oodt.cas.filemgr.catalog.lucene.idxPath=[OODT_HOME]/data/catalog org.apache.oodt.cas.filemgr.catalog.lucene.pageSize=20 org.apache.oodt.cas.filemgr.catalog.lucene.commitLockTimeout.seconds=60 org.apache.oodt.cas.filemgr.catalog.lucene.writeLockTimeout.seconds=60 org.apache.oodt.cas.filemgr.catalog.lucene.mergeFactor=20 # XML repository manager configuration org.apache.oodt.cas.filemgr.repositorymgr.dirs=file:[FILEMGR_HOME]/policy/o odt,file:[FILEMGR_HOME]/policy/gnss-h2o # XML validation layer configuration org.apache.oodt.cas.filemgr.validation.dirs=file:[FILEMGR_HOME]/policy/oodt ,file:[FILEMGR_HOME]/policy/gnss-h2o # remote data transfer configuration org.apache.oodt.cas.filemgr.datatransfer.remote.chunkSize=1024 # location of Mime-Type repository org.apache.oodt.cas.filemgr.mime.type.repository=[FILEMGR_HOME]/etc/mime-ty pes.xml I changed those lines to have “file://[FILEMGR_HOME]" # XML repository manager configuration org.apache.oodt.cas.filemgr.repositorymgr.dirs=file://[FILEMGR_HOME]/policy /oodt,file://[FILEMGR_HOME]/policy/gnss-h2o # XML validation layer configuration org.apache.oodt.cas.filemgr.validation.dirs=file://[FILEMGR_HOME]/policy/oo dt,file://[FILEMGR_HOME]/policy/gnss-h2o % fm -dbyid -pid ca00685a-79d4-11e5-9cae-33480ce63ace ERROR: Failed to delete product 'org.apache.oodt.cas.filemgr.structs.Product@3d52315f' : java.lang.Exception: java.lang.IllegalArgumentException: URI is not absolute But, the result is same. Then, I replaced all FILEMGR_HOME in filemgr.properties with valid paths. Same result… FYI. My ingest command is as below: % ./filemgr-client -url http://localhost:9000 -op -ingest -ptn rinex -ps Flat -mf "file:///project/amigho/deploy/gnss-h2o/pcs/data/staging/p1012850.15S.met" -rs "file:///project/amigho/deploy/gnss-h2o/pcs/data/staging/p1012850.15S" -pn p1012850.15S However, I found in lucene the <reference_data_store> contains an illegal path. I’m not sure if that causes the problem for deletion. But, I see this in other catalog (i.e. SMAP) too but it can be deleted. I’m sort of stuck. ;) No big deal. I just can’t test and will have to remove the entire catalog every time. BTW, RADIX does not deploy filemgr/etc/logging.properties. Thanks for your & Lewis’ pointer. I will continue to troubleshoot. Cynthia On 10/25/15, 10:33 AM, "Mattmann, Chris A (3980)" <chris.a.mattm...@jpl.nasa.gov> wrote: >Cynthia, > >The: > >"URI is not absolute” > >error is a long standing configuration issue wherein which >an environment variable referenced in a config (likely >etc/filemgr.properties) >is not defined, and there is a file://[SOME_VAR] use of it, that is a >URI. In this case you get a non absolute URI an hence the error. > >Please check your filemgr.properties and other configs as that is >the most likely cause of your problem. > >Cheers, >Chris > > >++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ >Chris Mattmann, Ph.D. >Chief Architect >Instrument Software and Science Data Systems Section (398) >NASA Jet Propulsion Laboratory Pasadena, CA 91109 USA >Office: 168-519, Mailstop: 168-527 >Email: chris.a.mattm...@nasa.gov >WWW: http://sunset.usc.edu/~mattmann/ >++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ >Adjunct Associate Professor, Computer Science Department >University of Southern California, Los Angeles, CA 90089 USA >++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ > > > > > >-----Original Message----- >From: "Wong, Cynthia L (398G)" <cynthia.l.w...@jpl.nasa.gov> >Reply-To: "dev@oodt.apache.org" <dev@oodt.apache.org> >Date: Thursday, October 22, 2015 at 4:15 PM >To: "dev@oodt.apache.org" <dev@oodt.apache.org> >Subject: OODT 0.10 FileMgr Errors > >>All, >> >>I¹m checking out OODT 0.10. Do you know if it works with JDK 1.7? >> >>I am able to ingest files but I can not perform the following commands to >>get info or delete them. >> >>% ./filemgr-client -url http://localhost:9000 -op -product -pn >>p1012850.15S >>% ./filemgr-client -url http://localhost:9000 -op -pbyn -pn p1012850.15S >>% ./filemgr-client -url http://localhost:9000 -op --deleteProductByName >>-pn p1012850.15S >>% ./filemgr-client -url http://localhost:9000 -op -dbyn -pn p1012850.15S >>% ./filemgr-client -url http://localhost:9000 -op -dbyid -pid >>68c41375-782d-11e5-808e-dd817024279f >> >>The error message onto console: >> >>ERROR: Failed to delete product >>'org.apache.oodt.cas.filemgr.structs.Product@27a8eaf7' : >>java.lang.Exception: java.lang.IllegalArgumentException: URI is not >>absolute >> >> >>And a list of files were ingested (in lucene): >> >>% ./filemgr-client -url http://localhost:9000 -op -page1 -ptn rinex >>Page: [num=1, totalPages=1, pageSize=20] >>Products: >>Product: >>[id=68c41375-782d-11e5-808e-dd817024279f,name=p1012850.15S,type=rinex,str >>u >>c >>ture=Flat, transferStatus=TRANSFERING] >>Product: >>[id=ba7a0b76-782d-11e5-808e-dd817024279f,name=p1012850.15S,type=rinex,str >>u >>c >>ture=Flat, transferStatus=TRANSFERING] >>Product: >>[id=dadee437-782d-11e5-808e-dd817024279f,name=p1012850.15S,type=rinex,str >>u >>c >>ture=Flat, transferStatus=RECEIVED] >>Product: >>[id=ce936405-782f-11e5-adf7-2f670ce93a4d,name=p1012850.15S,type=rinex,str >>u >>c >>ture=Flat, transferStatus=RECEIVED] >>Product: >>[id=e01b7556-782f-11e5-adf7-2f670ce93a4d,name=p1012850.15S,type=rinex,str >>u >>c >>ture=Flat, transferStatus=RECEIVED] >>Product: >>[id=2d6c0385-78e7-11e5-be8b-2f30a366015e,name=p1012850.15S,type=rinex,str >>u >>c >>ture=Flat, transferStatus=RECEIVED] >> >> >> >> >> >> >> >> >>FileMgr log contains the following errors that lead me think of >>compatibility issue. >> >> >>Oct 22, 2015 3:52:05 PM >>org.springframework.beans.factory.xml.DefaultNamespaceHandlerResolver >>initHandlerMappings >>FINE: Ignoring namespace handler >>[org.springframework.scripting.config.LangNamespaceHandler]: handler >>class >>not found >>java.lang.ClassNotFoundException: >>org.springframework.scripting.config.LangNamespaceHandler >> at java.net.URLClassLoader$1.run(URLClassLoader.java:366) >> at java.net.URLClassLoader$1.run(URLClassLoader.java:355) >> at java.security.AccessController.doPrivileged(Native Method) >> at java.net.URLClassLoader.findClass(URLClassLoader.java:354) >> at java.lang.ClassLoader.loadClass(ClassLoader.java:425) >> at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308) >> at java.lang.ClassLoader.loadClass(ClassLoader.java:358) >> at org.springframework.util.ClassUtils.forName(ClassUtils.java:249) >> at >>org.springframework.beans.factory.xml.DefaultNamespaceHandlerResolver.ini >>t >>H >>andlerMappings(DefaultNamespaceHandlerResolver.java:117) >> at >>org.springframework.beans.factory.xml.DefaultNamespaceHandlerResolver.<in >>i >>t >>>(DefaultNamespaceHandlerResolver.java:96) >> at >>org.springframework.beans.factory.xml.DefaultNamespaceHandlerResolver.<in >>i >>t >>>(DefaultNamespaceHandlerResolver.java:83) >> at >>org.springframework.beans.factory.xml.XmlBeanDefinitionReader.createDefau >>l >>t >>NamespaceHandlerResolver(XmlBeanDefinitionReader.java:498) >> at >>org.springframework.beans.factory.xml.XmlBeanDefinitionReader.createReade >>r >>C >>ontext(XmlBeanDefinitionReader.java:487) >> at >>org.springframework.beans.factory.xml.XmlBeanDefinitionReader.registerBea >>n >>D >>efinitions(XmlBeanDefinitionReader.java:468) >> at >>org.springframework.beans.factory.xml.XmlBeanDefinitionReader.doLoadBeanD >>e >>f >>initions(XmlBeanDefinitionReader.java:363) >> at >>org.springframework.beans.factory.xml.XmlBeanDefinitionReader.loadBeanDef >>i >>n >>itions(XmlBeanDefinitionReader.java:313) >> at >>org.springframework.beans.factory.xml.XmlBeanDefinitionReader.loadBeanDef >>i >>n >>itions(XmlBeanDefinitionReader.java:290) >> at >>org.springframework.beans.factory.support.AbstractBeanDefinitionReader.lo >>a >>d >>BeanDefinitions(AbstractBeanDefinitionReader.java:131) >> at >>org.springframework.beans.factory.support.AbstractBeanDefinitionReader.lo >>a >>d >>BeanDefinitions(AbstractBeanDefinitionReader.java:147) >> at >>org.springframework.beans.factory.support.AbstractBeanDefinitionReader.lo >>a >>d >>BeanDefinitions(AbstractBeanDefinitionReader.java:173) >> at >>org.springframework.context.support.AbstractXmlApplicationContext.loadBea >>n >>D >>efinitions(AbstractXmlApplicationContext.java:112) >> at >>org.springframework.context.support.AbstractXmlApplicationContext.loadBea >>n >>D >>efinitions(AbstractXmlApplicationContext.java:79) >> at >>org.springframework.context.support.AbstractRefreshableApplicationContext >>. >>r >>efreshBeanFactory(AbstractRefreshableApplicationContext.java:101) >> at >>org.springframework.context.support.AbstractApplicationContext.obtainFres >>h >>B >>eanFactory(AbstractApplicationContext.java:394) >> at >>org.springframework.context.support.AbstractApplicationContext.refresh(Ab >>s >>t >>ractApplicationContext.java:324) >> at >>org.springframework.context.support.FileSystemXmlApplicationContext.<init >>> >>( >>FileSystemXmlApplicationContext.java:124) >> at >>org.springframework.context.support.FileSystemXmlApplicationContext.<init >>> >>( >>FileSystemXmlApplicationContext.java:68) >> at >>org.apache.oodt.cas.cli.option.store.spring.SpringCmdLineOptionStore.<ini >>t >>> >>(SpringCmdLineOptionStore.java:45) >> at >>org.apache.oodt.cas.cli.option.store.spring.SpringCmdLineOptionStoreFacto >>r >>y >>.createStore(SpringCmdLineOptionStoreFactory.java:42) >> at org.apache.oodt.cas.cli.CmdLineUtility.<init>(CmdLineUtility.java:94) >> at >>org.apache.oodt.cas.filemgr.system.XmlRpcFileManagerClient.main(XmlRpcFil >>e >>M >>anagerClient.java:1349) >> >> >>Oct 22, 2015 3:52:05 PM >>org.springframework.beans.factory.xml.DefaultNamespaceHandlerResolver >>initHandlerMappings >>FINE: Ignoring namespace handler >>[org.springframework.ejb.config.JeeNamespaceHandler]: handler class not >>found >>java.lang.ClassNotFoundException: >>org.springframework.ejb.config.JeeNamespaceHandler >> at java.net.URLClassLoader$1.run(URLClassLoader.java:366) >> at java.net.URLClassLoader$1.run(URLClassLoader.java:355) >> at java.security.AccessController.doPrivileged(Native Method) >> at java.net.URLClassLoader.findClass(URLClassLoader.java:354) >> at java.lang.ClassLoader.loadClass(ClassLoader.java:425) >> at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308) >> at java.lang.ClassLoader.loadClass(ClassLoader.java:358) >> at org.springframework.util.ClassUtils.forName(ClassUtils.java:249) >> at >>org.springframework.beans.factory.xml.DefaultNamespaceHandlerResolver.ini >>t >>H >>andlerMappings(DefaultNamespaceHandlerResolver.java:117) >> at >>org.springframework.beans.factory.xml.DefaultNamespaceHandlerResolver.<in >>i >>t >>>(DefaultNamespaceHandlerResolver.java:96) >> at >>org.springframework.beans.factory.xml.DefaultNamespaceHandlerResolver.<in >>i >>t >>>(DefaultNamespaceHandlerResolver.java:83) >> at >>org.springframework.beans.factory.xml.XmlBeanDefinitionReader.createDefau >>l >>t >>NamespaceHandlerResolver(XmlBeanDefinitionReader.java:498) >> at >>org.springframework.beans.factory.xml.XmlBeanDefinitionReader.createReade >>r >>C >>ontext(XmlBeanDefinitionReader.java:487) >> at >>org.springframework.beans.factory.xml.XmlBeanDefinitionReader.registerBea >>n >>D >>efinitions(XmlBeanDefinitionReader.java:468) >> at >>org.springframework.beans.factory.xml.XmlBeanDefinitionReader.doLoadBeanD >>e >>f >>initions(XmlBeanDefinitionReader.java:363) >> at >>org.springframework.beans.factory.xml.XmlBeanDefinitionReader.loadBeanDef >>i >>n >>itions(XmlBeanDefinitionReader.java:313) >> at >>org.springframework.beans.factory.xml.XmlBeanDefinitionReader.loadBeanDef >>i >>n >>itions(XmlBeanDefinitionReader.java:290) >> at >>org.springframework.beans.factory.support.AbstractBeanDefinitionReader.lo >>a >>d >>BeanDefinitions(AbstractBeanDefinitionReader.java:131) >> at >>org.springframework.beans.factory.support.AbstractBeanDefinitionReader.lo >>a >>d >>BeanDefinitions(AbstractBeanDefinitionReader.java:147) >> at >>org.springframework.beans.factory.support.AbstractBeanDefinitionReader.lo >>a >>d >>BeanDefinitions(AbstractBeanDefinitionReader.java:173) >> at >>org.springframework.context.support.AbstractXmlApplicationContext.loadBea >>n >>D >>efinitions(AbstractXmlApplicationContext.java:112) >> at >>org.springframework.context.support.AbstractXmlApplicationContext.loadBea >>n >>D >>efinitions(AbstractXmlApplicationContext.java:79) >> at >>org.springframework.context.support.AbstractRefreshableApplicationContext >>. >>r >>efreshBeanFactory(AbstractRefreshableApplicationContext.java:101) >> at >>org.springframework.context.support.AbstractApplicationContext.obtainFres >>h >>B >>eanFactory(AbstractApplicationContext.java:394) >> at >>org.springframework.context.support.AbstractApplicationContext.refresh(Ab >>s >>t >>ractApplicationContext.java:324) >> at >>org.springframework.context.support.FileSystemXmlApplicationContext.<init >>> >>( >>FileSystemXmlApplicationContext.java:124) >> at >>org.springframework.context.support.FileSystemXmlApplicationContext.<init >>> >>( >>FileSystemXmlApplicationContext.java:68) >> at >>org.apache.oodt.cas.cli.option.store.spring.SpringCmdLineOptionStore.<ini >>t >>> >>(SpringCmdLineOptionStore.java:45) >> at >>org.apache.oodt.cas.cli.option.store.spring.SpringCmdLineOptionStoreFacto >>r >>y >>.createStore(SpringCmdLineOptionStoreFactory.java:42) >> at org.apache.oodt.cas.cli.CmdLineUtility.<init>(CmdLineUtility.java:94) >> at >>org.apache.oodt.cas.filemgr.system.XmlRpcFileManagerClient.main(XmlRpcFil >>e >>M >>anagerClient.java:1349) >> >> >>Oct 22, 2015 3:52:05 PM >>org.springframework.beans.factory.xml.DefaultNamespaceHandlerResolver >>initHandlerMappings >>FINE: Ignoring namespace handler >>[org.springframework.aop.config.AopNamespaceHandler]: handler class not >>found >>java.lang.ClassNotFoundException: >>org.springframework.aop.config.AopNamespaceHandler >> at java.net.URLClassLoader$1.run(URLClassLoader.java:366) >> at java.net.URLClassLoader$1.run(URLClassLoader.java:355) >> at java.security.AccessController.doPrivileged(Native Method) >> at java.net.URLClassLoader.findClass(URLClassLoader.java:354) >> at java.lang.ClassLoader.loadClass(ClassLoader.java:425) >> at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308) >> at java.lang.ClassLoader.loadClass(ClassLoader.java:358) >> at org.springframework.util.ClassUtils.forName(ClassUtils.java:249) >> at >>org.springframework.beans.factory.xml.DefaultNamespaceHandlerResolver.ini >>t >>H >>andlerMappings(DefaultNamespaceHandlerResolver.java:117) >> at >>org.springframework.beans.factory.xml.DefaultNamespaceHandlerResolver.<in >>i >>t >>>(DefaultNamespaceHandlerResolver.java:96) >> at >>org.springframework.beans.factory.xml.DefaultNamespaceHandlerResolver.<in >>i >>t >>>(DefaultNamespaceHandlerResolver.java:83) >> at >>org.springframework.beans.factory.xml.XmlBeanDefinitionReader.createDefau >>l >>t >>NamespaceHandlerResolver(XmlBeanDefinitionReader.java:498) >> at >>org.springframework.beans.factory.xml.XmlBeanDefinitionReader.createReade >>r >>C >>ontext(XmlBeanDefinitionReader.java:487) >> at >>org.springframework.beans.factory.xml.XmlBeanDefinitionReader.registerBea >>n >>D >>efinitions(XmlBeanDefinitionReader.java:468) >> at >>org.springframework.beans.factory.xml.XmlBeanDefinitionReader.doLoadBeanD >>e >>f >>initions(XmlBeanDefinitionReader.java:363) >> at >>org.springframework.beans.factory.xml.XmlBeanDefinitionReader.loadBeanDef >>i >>n >>itions(XmlBeanDefinitionReader.java:313) >> at >>org.springframework.beans.factory.xml.XmlBeanDefinitionReader.loadBeanDef >>i >>n >>itions(XmlBeanDefinitionReader.java:290) >> at >>org.springframework.beans.factory.support.AbstractBeanDefinitionReader.lo >>a >>d >>BeanDefinitions(AbstractBeanDefinitionReader.java:131) >> at >>org.springframework.beans.factory.support.AbstractBeanDefinitionReader.lo >>a >>d >>BeanDefinitions(AbstractBeanDefinitionReader.java:147) >> at >>org.springframework.beans.factory.support.AbstractBeanDefinitionReader.lo >>a >>d >>BeanDefinitions(AbstractBeanDefinitionReader.java:173) >> at >>org.springframework.context.support.AbstractXmlApplicationContext.loadBea >>n >>D >>efinitions(AbstractXmlApplicationContext.java:112) >> at >>org.springframework.context.support.AbstractXmlApplicationContext.loadBea >>n >>D >>efinitions(AbstractXmlApplicationContext.java:79) >> at >>org.springframework.context.support.AbstractRefreshableApplicationContext >>. >>r >>efreshBeanFactory(AbstractRefreshableApplicationContext.java:101) >> at >>org.springframework.context.support.AbstractApplicationContext.obtainFres >>h >>B >>eanFactory(AbstractApplicationContext.java:394) >> at >>org.springframework.context.support.AbstractApplicationContext.refresh(Ab >>s >>t >>ractApplicationContext.java:324) >> at >>org.springframework.context.support.FileSystemXmlApplicationContext.<init >>> >>( >>FileSystemXmlApplicationContext.java:124) >> at >>org.springframework.context.support.FileSystemXmlApplicationContext.<init >>> >>( >>FileSystemXmlApplicationContext.java:68) >> at >>org.apache.oodt.cas.cli.option.store.spring.SpringCmdLineOptionStore.<ini >>t >>> >>(SpringCmdLineOptionStore.java:45) >> at >>org.apache.oodt.cas.cli.option.store.spring.SpringCmdLineOptionStoreFacto >>r >>y >>.createStore(SpringCmdLineOptionStoreFactory.java:42) >> at org.apache.oodt.cas.cli.CmdLineUtility.<init>(CmdLineUtility.java:94) >> at >>org.apache.oodt.cas.filemgr.system.XmlRpcFileManagerClient.main(XmlRpcFil >>e >>M >>anagerClient.java:1349) >> >> >>Oct 22, 2015 3:52:05 PM >>org.springframework.beans.factory.xml.DefaultBeanDefinitionDocumentReader >>registerBeanDefinitions >>FINE: Loading bean definitions >>Oct 22, 2015 3:52:05 PM >>org.springframework.beans.factory.xml.BeanDefinitionParserDelegate >>parseBeanDefinitionElement >>FINE: Neither XML 'id' nor 'name' specified - using generated bean name >>[org.apache.oodt.cas.cli.option.handler.SetJavaPropertiesHandler#605514f9 >>] >> >>Any help is appreciated. >> >> >>Cynthia >> >
