Hi Kostas Couple of things, before running "oodt start" make sure you have JAVA_HOME set, it gets very upset if its not but random bits will launch.
Double check the file manager seems operational for the above error. I just launched opsui for the build I did this morning as I'd not actually tested it and it seems okay. I know opsui does like to get upset over minor things, but largely its perfectly functional. Tom On Wed, Mar 2, 2016 at 8:53 PM, Konstantinos Mavrommatis < kmavromma...@celgene.com> wrote: > Thanks, > Indeed updating to maven3 allowed the Radix installation to complete and > services start (based on ps ax | grep oodt) > But.. > After going to the opsui web page I can get the first page but 'File > Catalog Browse', 'Workflow Monitor', 'Resource Monitor', 'PCS status' > result in Runtime exception (see at the end of the message). > 'Configuration' on the other hand allows me to see the configuration of > the File manager only, but no other link on that page works. > 'Ingest' gives me the web page with the staging area and filemnager panels. > > In addition to using the pre-canned tomcat5 in the distribution I have > also tried to use tomcat7 but the result is the same. > Any ideas? > As previously this installation is on a freshly started Ubuntu 14.04 in > AWS. > Thanks > K > > > > WicketMessage: Can't instantiate page using constructor public > org.apache.oodt.pcs.opsui.status.StatusPage(org.apache.wicket.PageParameters) > throws java.lang.InstantiationException and argument > > Root cause: > > java.lang.NullPointerException > at > org.apache.oodt.pcs.util.FileManagerUtils.<init>(FileManagerUtils.java:68) > at > org.apache.oodt.pcs.util.FileManagerUtils.<init>(FileManagerUtils.java:77) > at > org.apache.oodt.pcs.tools.PCSHealthMonitor.<init>(PCSHealthMonitor.java:79) > at > org.apache.oodt.pcs.webcomponents.health.HealthMonitor.<init>(HealthMonitor.java:68) > at > org.apache.oodt.pcs.opsui.status.StatusPage.<init>(StatusPage.java:54) > at java.lang.reflect.Constructor.newInstance(Constructor.java:423) > at > org.apache.wicket.session.DefaultPageFactory.createPage(DefaultPageFactory.java:188) > at > org.apache.wicket.session.DefaultPageFactory.newPage(DefaultPageFactory.java:65) > at > org.apache.wicket.request.target.component.BookmarkablePageRequestTarget.newPage(BookmarkablePageRequestTarget.java:298) > at > org.apache.wicket.request.target.component.BookmarkablePageRequestTarget.getPage(BookmarkablePageRequestTarget.java:320) > at > org.apache.wicket.request.target.component.BookmarkablePageRequestTarget.processEvents(BookmarkablePageRequestTarget.java:234) > at > org.apache.wicket.request.AbstractRequestCycleProcessor.processEvents(AbstractRequestCycleProcessor.java:92) > at > org.apache.wicket.RequestCycle.processEventsAndRespond(RequestCycle.java:1250) > at org.apache.wicket.RequestCycle.step(RequestCycle.java:1329) > at org.apache.wicket.RequestCycle.steps(RequestCycle.java:1436) > at org.apache.wicket.RequestCycle.request(RequestCycle.java:545) > at > org.apache.wicket.protocol.http.WicketFilter.doGet(WicketFilter.java:486) > at > org.apache.wicket.protocol.http.WicketFilter.doFilter(WicketFilter.java:319) > at > org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241) > at > org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208) > at > org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:220) > at > org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:122) > at > org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:501) > at > org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:170) > at > org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:98) > at > org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:950) > at > org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:116) > at > org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:408) > at > org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1041) > at > org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:607) > at > org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:315) > at > java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) > at > java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) > at java.lang.Thread.run(Thread.java:745) > > Complete stack: > > org.apache.wicket.WicketRuntimeException: Can't instantiate page using > constructor public > org.apache.oodt.pcs.opsui.status.StatusPage(org.apache.wicket.PageParameters) > throws java.lang.InstantiationException and argument > at > org.apache.wicket.session.DefaultPageFactory.createPage(DefaultPageFactory.java:212) > at > org.apache.wicket.session.DefaultPageFactory.newPage(DefaultPageFactory.java:65) > at > org.apache.wicket.request.target.component.BookmarkablePageRequestTarget.newPage(BookmarkablePageRequestTarget.java:298) > at > org.apache.wicket.request.target.component.BookmarkablePageRequestTarget.getPage(BookmarkablePageRequestTarget.java:320) > at > org.apache.wicket.request.target.component.BookmarkablePageRequestTarget.processEvents(BookmarkablePageRequestTarget.java:234) > at > org.apache.wicket.request.AbstractRequestCycleProcessor.processEvents(AbstractRequestCycleProcessor.java:92) > at > org.apache.wicket.RequestCycle.processEventsAndRespond(RequestCycle.java:1250) > at org.apache.wicket.RequestCycle.step(RequestCycle.java:1329) > at org.apache.wicket.RequestCycle.steps(RequestCycle.java:1436) > at org.apache.wicket.RequestCycle.request(RequestCycle.java:545) > at > org.apache.wicket.protocol.http.WicketFilter.doGet(WicketFilter.java:486) > > java.lang.reflect.InvocationTargetException > at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native > Method) > at > sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62) > at java.lang.reflect.Constructor.newInstance(Constructor.java:423) > at > org.apache.wicket.session.DefaultPageFactory.createPage(DefaultPageFactory.java:188) > at > org.apache.wicket.session.DefaultPageFactory.newPage(DefaultPageFactory.java:65) > at > org.apache.wicket.request.target.component.BookmarkablePageRequestTarget.newPage(BookmarkablePageRequestTarget.java:298) > at > org.apache.wicket.request.target.component.BookmarkablePageRequestTarget.getPage(BookmarkablePageRequestTarget.java:320) > at > org.apache.wicket.request.target.component.BookmarkablePageRequestTarget.processEvents(BookmarkablePageRequestTarget.java:234) > at > org.apache.wicket.request.AbstractRequestCycleProcessor.processEvents(AbstractRequestCycleProcessor.java:92) > at > org.apache.wicket.RequestCycle.processEventsAndRespond(RequestCycle.java:1250) > at org.apache.wicket.RequestCycle.step(RequestCycle.java:1329) > at org.apache.wicket.RequestCycle.steps(RequestCycle.java:1436) > at org.apache.wicket.RequestCycle.request(RequestCycle.java:545) > at > org.apache.wicket.protocol.http.WicketFilter.doGet(WicketFilter.java:486) > > > -----Original Message----- > From: Tom Barber [mailto:tom.bar...@meteorite.bi] > Sent: Wednesday, March 02, 2016 1:33 AM > To: dev@oodt.apache.org > Subject: Re: Problem installing oodt 0.12. > > Okay Kostas > > You should certainly use Radix unless you have good reason not to, it's by > far the sanest way to build a project currently. > > I use containers to check this stuff so maven can't cheat an use a cached > dependency etc it also isolates my tests from any other rubbish I have > running on my laptop. So I've created a clean ubuntu trusty environment and > here is my entire bash_history: > > apt-get get update > apt-get update > apt-get install openjdk7-jdk > apt-cache search openjdk > apt-get install openjdk-7-jdk > apt-get install maven > mvn -v > curl -s " > > https://urldefense.proofpoint.com/v2/url?u=https-3A__git-2Dwip-2Dus.apache.org_repos_asf-3Fp-3Doodt.git-3Ba-3Dblob-5Fplain-3Bf-3Dmvn_archetypes_radix_src_main_resources_bin_radix-3Bhb-3DHEAD&d=CwIFaQ&c=CZZujK3G2KuXGEKnzq-Hrg&r=wndYZ4MLMT9l3Zb2WZv2hq2O6yvZ1Cs-T2gHY95y7ZA&m=Hxhb-K_1RTAMyy7OPQNBkP6KjbMlImt8JVSUeGy4Zmw&s=WIGMOxijYw_KyYYAMtZV_4ZCfXXOwMkClITLEe18iME&e= > " > | bash > mv oodt oodt-src; cd oodt-src; mvn install cd ../oodt; ./bin/oodt start ps > aux |grep oodt > > At the end of that I had a working OODT. > > I then dumped Oracle JDK8 on the server to test that and built OODT and it > ran fine. > > I'm not entirely sure whats causing that geronimo error, I do know that > codehaus shutting down caused a few issues for a lot of projects. I would > recommend updating to Maven 3, and clearing your ~/.m2/repository folder to > make sure you don't have any half downloaded or stale dependencies. > > From what I can see the 0.12 Radix build works fine as I copied the wiki > page verbatim. Let me know how it goes! > > Tom > > On Wed, Mar 2, 2016 at 8:24 AM, Tom Barber <tom.bar...@meteorite.bi> > wrote: > > > Not tried to build 0.12 yet, but I can do in 30 mins when I get to my > > desk. Give maven 3 a whirl and see if you get any further. > > > > Tom > > On 2 Mar 2016 08:02, "Konstantinos Mavrommatis" > > <kmavromma...@celgene.com> > > wrote: > > > >> Thanks, > >> I tried the -DskipTests but now I got stuck at another point: > >> > >> [ERROR] BUILD ERROR > >> [INFO] > >> --------------------------------------------------------------------- > >> --- > >> [INFO] Failed to resolve artifact. > >> > >> Unable to get dependency information: Unable to read the metadata > >> file for artifact > 'org.apache.geronimo.specs:geronimo-stax-api_1.0_spec:jar': > >> Cannot find parent: org.apache.geronimo.genesis.config:config for > project: > >> null:project-config:pom:1.1 for project null:project-config:pom:1.1 > >> org.apache.geronimo.specs:geronimo-stax-api_1.0_spec:jar:1.0.1 > >> > >> from the specified remote repositories: > >> central ( > https://urldefense.proofpoint.com/v2/url?u=http-3A__repo1.maven.org_maven2&d=CwIFaQ&c=CZZujK3G2KuXGEKnzq-Hrg&r=wndYZ4MLMT9l3Zb2WZv2hq2O6yvZ1Cs-T2gHY95y7ZA&m=Hxhb-K_1RTAMyy7OPQNBkP6KjbMlImt8JVSUeGy4Zmw&s=jID-Hi7Y4Xt7SBMyyS39SNKCBjakt53C2H0OdSQebZs&e= > ), > >> sonatype-nexus ( > https://urldefense.proofpoint.com/v2/url?u=https-3A__oss.sonatype.org_content_groups_public&d=CwIFaQ&c=CZZujK3G2KuXGEKnzq-Hrg&r=wndYZ4MLMT9l3Zb2WZv2hq2O6yvZ1Cs-T2gHY95y7ZA&m=Hxhb-K_1RTAMyy7OPQNBkP6KjbMlImt8JVSUeGy4Zmw&s=tIk_ALhzBIJ4oQVzM5RlSrvHj1qIOThySGyPChlC5kg&e= > ), > >> apache.snapshots > >> (https://urldefense.proofpoint.com/v2/url?u=http-3A__repository.apach > >> e.org_snapshots&d=CwIFaQ&c=CZZujK3G2KuXGEKnzq-Hrg&r=wndYZ4MLMT9l3Zb2W > >> Zv2hq2O6yvZ1Cs-T2gHY95y7ZA&m=Hxhb-K_1RTAMyy7OPQNBkP6KjbMlImt8JVSUeGy4 > >> Zmw&s=uQ7iVq6fUygfUf1fhQfyYIFJRcwh6C-F4JU2NoT3IdI&e= ) > >> > >> Path to dependency: > >> 1) org.apache.oodt:cas-filemgr:jar:0.12 > >> 2) org.apache.solr:solr-core:jar:1.3.0 > >> > >> > >> > >> > >> > >> > >> -----Original Message----- > >> From: Tom Barber [mailto:tom.bar...@meteorite.bi] > >> Sent: Tuesday, March 01, 2016 11:59 PM > >> To: dev@oodt.apache.org > >> Subject: Re: Problem installing oodt 0.12. > >> > >> Also FYI I'd suggest maven 3.x these days, I don't think it will make > >> a difference in your case but at least it's relatively up to date. > >> > >> Tom > >> On 2 Mar 2016 07:54, "Tom Barber" <tom.bar...@meteorite.bi> wrote: > >> > >> > Hi Kostas > >> > > >> > There is a dependency but the tests should mock it, a while ago I > >> > fixed a lot of that stuff where the tests failed to mock services > >> > and instead bound to ports and things because from time to time it > >> > does > >> cause issues. > >> > > >> > For now I'd suggest you run -DskipTests as they've been run and > >> > passed prior to release. Not ideal but will unblock you. > >> > > >> > I'll try and get that test resolved properly, soon. > >> > > >> > Cheers, > >> > > >> > Tom > >> > On 2 Mar 2016 06:52, "Konstantinos Mavrommatis" > >> > <kmavromma...@celgene.com> > >> > wrote: > >> > > >> >> Hi, > >> >> I am trying to install the latest oodt 0.12 from the src.zip file. > >> >> The installation is on a clean Ubuntu 14.04 with maven2.2.1 and > >> >> Oracle java JDK 1.8.0_74 After unzipping the archive I run mvn > >> >> clean install and I get the following error: > >> >> > >> >> $ more org.apache.oodt.cas.protocol.imaps.TestImapsProtocol.txt > >> >> > >> >> ------------------------------------------------------------------ > >> >> --- > >> >> ---------- Test set: > >> >> org.apache.oodt.cas.protocol.imaps.TestImapsProtocol > >> >> > >> >> ------------------------------------------------------------------ > >> >> --- > >> >> ---------- Tests run: 3, Failures: 1, Errors: 2, Skipped: 0, Time > >> >> elapsed: 2.466 sec <<< FAILURE! - in org.apache.oodt.cas.protocol > >> >> .imaps.TestImapsProtocol > >> >> testLSandGET(org.apache.oodt.cas.protocol.imaps.TestImapsProtocol) > >> >> Time > >> >> elapsed: 0.374 sec <<< FAILURE! > >> >> junit.framework.AssertionFailedError: Failed to connect to > >> >> GreenMail IMAPS server : Failed to connected to IMAPS server > >> >> localhost with username bfos...@google.com : > >> >> java.security.cert.CertificateException: Certificates does not > >> >> conform to a lgorithm constraints > >> >> at junit.framework.Assert.fail(Assert.java:57) > >> >> at junit.framework.TestCase.fail(TestCase.java:227) > >> >> at > >> >> org.apache.oodt.cas.protocol.imaps.TestImapsProtocol.setUp(TestIma > >> >> psP > >> >> rotocol.java:62) > >> >> > >> >> testCDAndPWD(org.apache.oodt.cas.protocol.imaps.TestImapsProtocol) > >> >> Time > >> >> elapsed: 1.036 sec <<< ERROR! > >> >> java.lang.RuntimeException: Couldnt start at least one of the mail > >> >> services. > >> >> at > >> com.icegreen.greenmail.util.GreenMail.start(GreenMail.java:91) > >> >> at > >> >> org.apache.oodt.cas.protocol.imaps.TestImapsProtocol.setUp(TestIma > >> >> psP > >> >> rotocol.java:56) > >> >> > >> >> testDelete(org.apache.oodt.cas.protocol.imaps.TestImapsProtocol) > >> >> Time > >> >> elapsed: 1.025 sec <<< ERROR! > >> >> java.lang.RuntimeException: Couldnt start at least one of the mail > >> >> services. > >> >> at > >> com.icegreen.greenmail.util.GreenMail.start(GreenMail.java:91) > >> >> at > >> >> org.apache.oodt.cas.protocol.imaps.TestImapsProtocol.setUp(TestIma > >> >> psP > >> >> rotocol.java:56) > >> >> > >> >> is there a dependency on a email server? If so why is that ? > >> >> > >> >> I also tried to install it using Radix and the commands described > >> >> in > >> >> > >> https://urldefense.proofpoint.com/v2/url?u=https-3A__cwiki.apache.org > >> _confluence_display_OODT_RADiX-2BPowered-2BBy-2BOODT-23RADiXPoweredBy > >> OODT-2DTheCommands&d=CwIBaQ&c=CZZujK3G2KuXGEKnzq-Hrg&r=wndYZ4MLMT9l3Z > >> b2WZv2hq2O6yvZ1Cs-T2gHY95y7ZA&m=7zyWU1FH-fPuthdUVQiHJPWU7Dzdx72sdoSRO > >> sD7jAg&s=7c322fhJX9BbXH_E2tuD6_1XTUpRbOq3IOdbK0rhZJQ&e= > >> . > >> >> In this case after I run > >> >> Mvn install > >> >> I get the error message > >> >> > >> >> [ERROR] BUILD ERROR > >> >> [INFO] > >> >> ------------------------------------------------------------------ > >> >> --- > >> >> --- > >> >> [INFO] Failed to resolve artifact. > >> >> > >> >> Unable to get dependency information: Unable to read the metadata > >> >> file for artifact > >> 'org.apache.geronimo.specs:geronimo-stax-api_1.0_spec:jar': > >> >> Cannot find parent: org.apache.geronimo.genesis.config:config for > >> project: > >> >> null:project-config:pom:1.1 for project null:project-config:pom:1.1 > >> >> org.apache.geronimo.specs:geronimo-stax-api_1.0_spec:jar:1.0.1 > >> >> > >> >> from the specified remote repositories: > >> >> central ( > >> https://urldefense.proofpoint.com/v2/url?u=http-3A__repo1.maven.org_m > >> aven2&d=CwIBaQ&c=CZZujK3G2KuXGEKnzq-Hrg&r=wndYZ4MLMT9l3Zb2WZv2hq2O6yv > >> Z1Cs-T2gHY95y7ZA&m=7zyWU1FH-fPuthdUVQiHJPWU7Dzdx72sdoSROsD7jAg&s=y7Jm > >> u07ef4O7sZkm2UgjPwz5AriwBB27YpSbA1PEX2M&e= > >> ), > >> >> sonatype-nexus ( > >> https://urldefense.proofpoint.com/v2/url?u=https-3A__oss.sonatype.org > >> _content_groups_public&d=CwIBaQ&c=CZZujK3G2KuXGEKnzq-Hrg&r=wndYZ4MLMT > >> 9l3Zb2WZv2hq2O6yvZ1Cs-T2gHY95y7ZA&m=7zyWU1FH-fPuthdUVQiHJPWU7Dzdx72sd > >> oSROsD7jAg&s=3DZxpQ_ny0ek1Uem6Y28Aj0MHzPR0snWhXqf_uqg6dY&e= > >> ), > >> >> maven2 ( > >> https://urldefense.proofpoint.com/v2/url?u=http-3A__download.java.net > >> _maven_2&d=CwIBaQ&c=CZZujK3G2KuXGEKnzq-Hrg&r=wndYZ4MLMT9l3Zb2WZv2hq2O > >> 6yvZ1Cs-T2gHY95y7ZA&m=7zyWU1FH-fPuthdUVQiHJPWU7Dzdx72sdoSROsD7jAg&s=k > >> dBRgD_tTzx0lAqOXJlqSRobXUrHYd37MJQPSMoizcM&e= > >> ), > >> >> apache.snapshots > >> >> (https://urldefense.proofpoint.com/v2/url?u=http-3A__repository.ap > >> >> ach > >> >> e.org_snapshots_&d=CwIBaQ&c=CZZujK3G2KuXGEKnzq-Hrg&r=wndYZ4MLMT9l3 > >> >> Zb2 > >> >> WZv2hq2O6yvZ1Cs-T2gHY95y7ZA&m=7zyWU1FH-fPuthdUVQiHJPWU7Dzdx72sdoSR > >> >> OsD 7jAg&s=XIzxBSR-4MCtOnhqZSI8Vf_-8rHnLRC2nCdEn8eTbTE&e= ) > >> >> > >> >> Path to dependency: > >> >> 1) com.mycompany:oodt-extensions:jar:0.1 > >> >> 2) org.apache.oodt:cas-filemgr:jar:0.12 > >> >> 3) org.apache.solr:solr-core:jar:1.3.0 > >> >> > >> >> > >> >> Am I doing something wrong ? > >> >> Thanks in advance for your help. > >> >> > >> >> Kostas > >> >> > >> >> > >> >> ********************************************************* > >> >> THIS ELECTRONIC MAIL MESSAGE AND ANY ATTACHMENT IS CONFIDENTIAL > >> >> AND MAY CONTAIN LEGALLY PRIVILEGED INFORMATION INTENDED ONLY FOR > >> >> THE USE OF THE INDIVIDUAL OR INDIVIDUALS NAMED ABOVE. > >> >> If the reader is not the intended recipient, or the employee or > >> >> agent responsible to deliver it to the intended recipient, you are > >> >> hereby notified that any dissemination, distribution or copying of > >> >> this communication is strictly prohibited. If you have received > >> >> this communication in error, please reply to the sender to notify > >> >> us of the error and delete the original message. Thank You. > >> >> > >> > > >> > >> ********************************************************* > >> THIS ELECTRONIC MAIL MESSAGE AND ANY ATTACHMENT IS CONFIDENTIAL AND > >> MAY CONTAIN LEGALLY PRIVILEGED INFORMATION INTENDED ONLY FOR THE USE > >> OF THE INDIVIDUAL OR INDIVIDUALS NAMED ABOVE. > >> If the reader is not the intended recipient, or the employee or agent > >> responsible to deliver it to the intended recipient, you are hereby > >> notified that any dissemination, distribution or copying of this > >> communication is strictly prohibited. If you have received this > >> communication in error, please reply to the sender to notify us of > >> the error and delete the original message. Thank You. > >> > > > > ********************************************************* > THIS ELECTRONIC MAIL MESSAGE AND ANY ATTACHMENT IS > CONFIDENTIAL AND MAY CONTAIN LEGALLY PRIVILEGED > INFORMATION INTENDED ONLY FOR THE USE OF THE INDIVIDUAL > OR INDIVIDUALS NAMED ABOVE. > If the reader is not the intended recipient, or the > employee or agent responsible to deliver it to the > intended recipient, you are hereby notified that any > dissemination, distribution or copying of this > communication is strictly prohibited. If you have > received this communication in error, please reply to the > sender to notify us of the error and delete the original > message. Thank You. >
