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https://issues.apache.org/jira/browse/PDFBOX-1895?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
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Andreas Lehmkühler resolved PDFBOX-1895.
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       Resolution: Fixed
    Fix Version/s: 2.0.0
                   1.8.6
         Assignee: Andreas Lehmkühler

I agree with Pat, most of the CIDSystemInfo dictionaries weren't decrypted.

I fixed that in revision 1594639 (trunk) and revision 1594642 (1.8 branch).

> Type0 settings /Registry and /Ordering are not decrypted when writing document
> ------------------------------------------------------------------------------
>
>                 Key: PDFBOX-1895
>                 URL: https://issues.apache.org/jira/browse/PDFBOX-1895
>             Project: PDFBox
>          Issue Type: Bug
>          Components: Writing
>    Affects Versions: 1.8.3, 1.8.4
>            Reporter: Pat Hickey
>            Assignee: Andreas Lehmkühler
>             Fix For: 1.8.6, 2.0.0
>
>
> When re-writing a document with font descriptions, Adobe Reader is unable to 
> display the fonts in the document.  Reader can display the fonts in the 
> original document. The difference is that in the original document, the font 
> descriptions are in lower object numbers than the font references; in the 
> output document, the font descriptions are in higher object numbers than the 
> font references.  Is there a quick way to re-order them?
> Update: the PDF file in question is actually corrupt, but somehow modifying 
> it with PDFBox causes it to no longer be readable with Adobe Reader.
> Update: The position of the objects in the document is not important, and is 
> not the issue. Whether the file is corrupt or not according to preflight 
> tools is not the issue. The problem is that the input document is encrypted, 
> including the /Registry and /Ordering settings on the Type0 font, and the 
> output document is not, however the encrypted strings are copied verbatim to 
> the output document, despite having decrypted copies in use for the CMap of 
> the PDType0Font.



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