[
https://issues.apache.org/jira/browse/PHOENIX-2599?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
]
Abhishek Kothalikar updated PHOENIX-2599:
-----------------------------------------
Description:
When running Spark 1.4.1 and Phoenix 4.5.1 via Phoenix-Spark connector. We
notice sometimes (30~50%) time the following error would appear and kill the
running spark job:
16/01/14 19:40:16 ERROR yarn.ApplicationMaster: User class threw exception:
org.apache.spark.SparkException: Job aborted due to stage failure: Task 5 in
stage 110.0 failed 4 times, most recent failure: Lost task 5.3 in stage 110.0
(TID 35526, datanode-123.somewhere): java.lang.RuntimeException:
org.apache.phoenix.schema.StaleRegionBoundaryCacheException: ERROR 1108
(XCL08): Cache of region boundaries are out of date.
at com.google.common.base.Throwables.propagate(Throwables.java:156)
at
org.apache.phoenix.mapreduce.PhoenixRecordReader.initialize(PhoenixRecordReader.java:126)
at org.apache.spark.rdd.NewHadoopRDD$$anon$1.<init>(NewHadoopRDD.scala:133)
at org.apache.spark.rdd.NewHadoopRDD.compute(`.scala:104)
at org.apache.spark.rdd.NewHadoopRDD.compute(NewHadoopRDD.scala:66)
at org.apache.phoenix.spark.PhoenixRDD.compute(PhoenixRDD.scala:52)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:277)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:244)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:35)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:277)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:244)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:35)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:277)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:244)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:63)
at org.apache.spark.scheduler.Task.run(Task.scala:70)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:213)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
Caused by: org.apache.phoenix.schema.StaleRegionBoundaryCacheException: ERROR
1108 (XCL08): Cache of region boundaries are out of date.
at
org.apache.phoenix.exception.SQLExceptionCode$13.newException(SQLExceptionCode.java:304)
at
org.apache.phoenix.exception.SQLExceptionInfo.buildException(SQLExceptionInfo.java:145)
at org.apache.phoenix.util.ServerUtil.parseRemoteException(ServerUtil.java:131)
at
org.apache.phoenix.util.ServerUtil.parseServerExceptionOrNull(ServerUtil.java:115)
at org.apache.phoenix.util.ServerUtil.parseServerException(ServerUtil.java:104)
at
org.apache.phoenix.iterate.TableResultIterator.getDelegate(TableResultIterator.java:70)
at
org.apache.phoenix.iterate.TableResultIterator.<init>(TableResultIterator.java:88)
at
org.apache.phoenix.iterate.TableResultIterator.<init>(TableResultIterator.java:79)
at
org.apache.phoenix.mapreduce.PhoenixRecordReader.initialize(PhoenixRecordReader.java:111)
... 18 more
was:
When running Spark 1.4.1 and Phoenix 4.5.1 via Phoenix-Spark connector. We
notice sometimes (30~50%) time the following error would appear and kill the
running spark job:
16/01/14 19:40:16 ERROR yarn.ApplicationMaster: User class threw exception:
org.apache.spark.SparkException: Job aborted due to stage failure: Task 5 in
stage 110.0 failed 4 times, most recent failure: Lost task 5.3 in stage 110.0
(TID 35526, datanode-123.somewhere): java.lang.RuntimeException:
org.apache.phoenix.schema.StaleRegionBoundaryCacheException: ERROR 1108
(XCL08): Cache of region boundaries are out of date.
at com.google.common.base.Throwables.propagate(Throwables.java:156)
at
org.apache.phoenix.mapreduce.PhoenixRecordReader.initialize(PhoenixRecordReader.java:126)
at org.apache.spark.rdd.NewHadoopRDD$$anon$1.<init>(NewHadoopRDD.scala:133)
at org.apache.spark.rdd.NewHadoopRDD.compute(NewHadoopRDD.scala:104)
at org.apache.spark.rdd.NewHadoopRDD.compute(NewHadoopRDD.scala:66)
at org.apache.phoenix.spark.PhoenixRDD.compute(PhoenixRDD.scala:52)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:277)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:244)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:35)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:277)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:244)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:35)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:277)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:244)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:63)
at org.apache.spark.scheduler.Task.run(Task.scala:70)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:213)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
Caused by: org.apache.phoenix.schema.StaleRegionBoundaryCacheException: ERROR
1108 (XCL08): Cache of region boundaries are out of date.
at
org.apache.phoenix.exception.SQLExceptionCode$13.newException(SQLExceptionCode.java:304)
at
org.apache.phoenix.exception.SQLExceptionInfo.buildException(SQLExceptionInfo.java:145)
at org.apache.phoenix.util.ServerUtil.parseRemoteException(ServerUtil.java:131)
at
org.apache.phoenix.util.ServerUtil.parseServerExceptionOrNull(ServerUtil.java:115)
at org.apache.phoenix.util.ServerUtil.parseServerException(ServerUtil.java:104)
at
org.apache.phoenix.iterate.TableResultIterator.getDelegate(TableResultIterator.java:70)
at
org.apache.phoenix.iterate.TableResultIterator.<init>(TableResultIterator.java:88)
at
org.apache.phoenix.iterate.TableResultIterator.<init>(TableResultIterator.java:79)
at
org.apache.phoenix.mapreduce.PhoenixRecordReader.initialize(PhoenixRecordReader.java:111)
... 18 more
> PhoenixRecordReader does not handle StaleRegionBoundaryCacheException
> ---------------------------------------------------------------------
>
> Key: PHOENIX-2599
> URL: https://issues.apache.org/jira/browse/PHOENIX-2599
> Project: Phoenix
> Issue Type: Bug
> Affects Versions: 4.5.1
> Environment: HBase 1.0 + Linux
> Reporter: Li Gao
> Assignee: Josh Mahonin
> Priority: Major
> Fix For: 4.7.0
>
> Attachments: PHOENIX-2599.patch
>
>
> When running Spark 1.4.1 and Phoenix 4.5.1 via Phoenix-Spark connector. We
> notice sometimes (30~50%) time the following error would appear and kill the
> running spark job:
> 16/01/14 19:40:16 ERROR yarn.ApplicationMaster: User class threw exception:
> org.apache.spark.SparkException: Job aborted due to stage failure: Task 5 in
> stage 110.0 failed 4 times, most recent failure: Lost task 5.3 in stage 110.0
> (TID 35526, datanode-123.somewhere): java.lang.RuntimeException:
> org.apache.phoenix.schema.StaleRegionBoundaryCacheException: ERROR 1108
> (XCL08): Cache of region boundaries are out of date.
> at com.google.common.base.Throwables.propagate(Throwables.java:156)
> at
> org.apache.phoenix.mapreduce.PhoenixRecordReader.initialize(PhoenixRecordReader.java:126)
> at org.apache.spark.rdd.NewHadoopRDD$$anon$1.<init>(NewHadoopRDD.scala:133)
> at org.apache.spark.rdd.NewHadoopRDD.compute(`.scala:104)
> at org.apache.spark.rdd.NewHadoopRDD.compute(NewHadoopRDD.scala:66)
> at org.apache.phoenix.spark.PhoenixRDD.compute(PhoenixRDD.scala:52)
> at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:277)
> at org.apache.spark.rdd.RDD.iterator(RDD.scala:244)
> at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:35)
> at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:277)
> at org.apache.spark.rdd.RDD.iterator(RDD.scala:244)
> at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:35)
> at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:277)
> at org.apache.spark.rdd.RDD.iterator(RDD.scala:244)
> at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:63)
> at org.apache.spark.scheduler.Task.run(Task.scala:70)
> at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:213)
> at
> java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
> at
> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
> at java.lang.Thread.run(Thread.java:745)
> Caused by: org.apache.phoenix.schema.StaleRegionBoundaryCacheException: ERROR
> 1108 (XCL08): Cache of region boundaries are out of date.
> at
> org.apache.phoenix.exception.SQLExceptionCode$13.newException(SQLExceptionCode.java:304)
> at
> org.apache.phoenix.exception.SQLExceptionInfo.buildException(SQLExceptionInfo.java:145)
> at
> org.apache.phoenix.util.ServerUtil.parseRemoteException(ServerUtil.java:131)
> at
> org.apache.phoenix.util.ServerUtil.parseServerExceptionOrNull(ServerUtil.java:115)
> at
> org.apache.phoenix.util.ServerUtil.parseServerException(ServerUtil.java:104)
> at
> org.apache.phoenix.iterate.TableResultIterator.getDelegate(TableResultIterator.java:70)
> at
> org.apache.phoenix.iterate.TableResultIterator.<init>(TableResultIterator.java:88)
> at
> org.apache.phoenix.iterate.TableResultIterator.<init>(TableResultIterator.java:79)
> at
> org.apache.phoenix.mapreduce.PhoenixRecordReader.initialize(PhoenixRecordReader.java:111)
> ... 18 more
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