thao p nguyen created SINGA-441:
-----------------------------------
Summary: can not build CPU version of SINGA on python 3.6
Key: SINGA-441
URL: https://issues.apache.org/jira/browse/SINGA-441
Project: Singa
Issue Type: Bug
Components: Documentation
Environment: - ubuntu 18
- python 3.6.7
Reporter: thao p nguyen
After installed miniconda and conda-build successfully, can not install Singa
on both python3.6 & 3.7. Below are my command lines and messages:
thao@thao-OptiPlex-5060:~$ conda list
WARNING: The conda.compat module is deprecated and will be removed in a future
release.
# packages in environment at /home/thao/miniconda3:
#
# Name Version Build Channel
asn1crypto 0.24.0 py37_0
beautifulsoup4 4.7.1 py37_1
bzip2 1.0.6 h14c3975_5
ca-certificates 2019.1.23 0
certifi 2019.3.9 py37_0
cffi 1.11.5 py37he75722e_1
chardet 3.0.4 py37_1
conda 4.6.11 py37_0
conda-build 3.17.8 py37_0
conda-env 2.6.0 1
cryptography 2.4.2 py37h1ba5d50_0
filelock 3.0.10 py37_0
glob2 0.6 py37_1
icu 58.2 h9c2bf20_1
idna 2.8 py37_0
jinja2 2.10 py37_0
libarchive 3.3.3 h5d8350f_5
libedit 3.1.20170329 h6b74fdf_2
libffi 3.2.1 hd88cf55_4
libgcc-ng 8.2.0 hdf63c60_1
liblief 0.9.0 h7725739_2
libstdcxx-ng 8.2.0 hdf63c60_1
libxml2 2.9.9 he19cac6_0
lz4-c 1.8.1.2 h14c3975_0
lzo 2.10 h49e0be7_2
markupsafe 1.1.1 py37h7b6447c_0
ncurses 6.1 he6710b0_1
openssl 1.1.1b h7b6447c_1
patchelf 0.9 he6710b0_3
pip 18.1 py37_0
pkginfo 1.5.0.1 py37_0
psutil 5.6.1 py37h7b6447c_0
py-lief 0.9.0 py37h7725739_2
pycosat 0.6.3 py37h14c3975_0
pycparser 2.19 py37_0
pyopenssl 18.0.0 py37_0
pysocks 1.6.8 py37_0
python 3.7.1 h0371630_7
python-libarchive-c 2.8 py37_6
pytz 2018.9 py37_0
pyyaml 5.1 py37h7b6447c_0
readline 7.0 h7b6447c_5
requests 2.21.0 py37_0
ruamel_yaml 0.15.46 py37h14c3975_0
setuptools 40.6.3 py37_0
six 1.12.0 py37_0
soupsieve 1.8 py37_0
sqlite 3.26.0 h7b6447c_0
tk 8.6.8 hbc83047_0
tqdm 4.31.1 py37_1
urllib3 1.24.1 py37_0
wheel 0.32.3 py37_0
xz 5.2.4 h14c3975_4
yaml 0.1.7 had09818_2
zlib 1.2.11 h7b6447c_3
zstd 1.3.7 h0b5b093_0
thao@thao-OptiPlex-5060:~$ conda install conda-build
WARNING: The conda.compat module is deprecated and will be removed in a future
release.
Collecting package metadata: done
Solving environment: done
# All requested packages already installed.
thao@thao-OptiPlex-5060:~$ cd Documents/Singa/incubator-singa/
thao@thao-OptiPlex-5060:~/Documents/Singa/incubator-singa$ export BUILD_STR=cpu
thao@thao-OptiPlex-5060:~/Documents/Singa/incubator-singa$ conda build
tool/conda/singa/ --python 3.7
WARNING: The conda.compat module is deprecated and will be removed in a future
release.
No numpy version specified in conda_build_config.yaml. Falling back to default
numpy value of 1.11
WARNING:conda_build.metadata:No numpy version specified in
conda_build_config.yaml. Falling back to default numpy value of 1.11
Cloning into '/home/thao/miniconda3/conda-bld/singa_1554907178635/work'...
done.
checkout: 'HEAD'
Your branch is up to date with 'origin/_conda_cache_origin_head'.
Submodule 'rafiki' (https://github.com/nginyc/rafiki.git) registered for path
'rafiki'
Cloning into
'/home/thao/miniconda3/conda-bld/singa_1554907178635/work/rafiki'...
Submodule path 'rafiki': checked out 'b027c588f27ed4e801e8e300785b0eca230b5167'
==> git log -n1 <==
commit 5f14f3dbc005a64fdbc508bff63db92e6d3e05b6
Merge: 8072ecdb 73a3b471
Author: Wang Wei <wangwei...@gmail.com>
Date: Sun Apr 7 13:11:35 2019 +0800
Merge branch 'master' of https://gitbox.apache.org/repos/asf/incubator-singa
==> git describe --tags --dirty <==
2.0.0rc1
==> git status <==
On branch _conda_cache_origin_head
Your branch is up to date with 'origin/_conda_cache_origin_head'.
nothing to commit, working tree clean
Adding in variants from internal_defaults
INFO:conda_build.variants:Adding in variants from internal_defaults
Adding in variants from
/home/thao/Documents/Singa/incubator-singa/tool/conda/singa/conda_build_config.yaml
INFO:conda_build.variants:Adding in variants from
/home/thao/Documents/Singa/incubator-singa/tool/conda/singa/conda_build_config.yaml
Adding in variants from config.variant
INFO:conda_build.variants:Adding in variants from config.variant
/home/thao/miniconda3/lib/python3.7/site-packages/conda_build/environ.py:414:
UserWarning: The environment variable 'CUDA' is undefined.
UserWarning
Attempting to finalize metadata for singa
INFO:conda_build.metadata:Attempting to finalize metadata for singa
Collecting package metadata: ...working... done
Solving environment: ...working... done
Collecting package metadata: ...working... done
Solving environment: ...working... done
Collecting package metadata: ...working... done
Solving environment: ...working... done
Collecting package metadata: ...working... done
Solving environment: ...working... done
BUILD START: ['singa-2.0.0rc1-cpu.tar.bz2']
Collecting package metadata: ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location:
/home/thao/miniconda3/conda-bld/singa_1554907178635/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh
The following NEW packages will be INSTALLED:
blas: 1.0-openblas
ca-certificates: 2019.1.23-0
certifi: 2019.3.9-py36_0
gflags: 2.2.2-he6710b0_0
glog: 0.3.5-hf484d3e_1
intel-openmp: 2018.0.3-0
libedit: 3.1.20181209-hc058e9b_0
libffi: 3.2.1-hd88cf55_4
libgcc-ng: 8.2.0-hdf63c60_1
libgfortran-ng: 7.3.0-hdf63c60_0
libmklml: 2018.0.3-0
libopenblas: 0.3.3-h5a2b251_3
libprotobuf: 3.4.0-0
libstdcxx-ng: 8.2.0-hdf63c60_1
mkl-dnn: 0.14-h6bb024c_0
ncurses: 6.1-he6710b0_1
nomkl: 3.0-0
numpy: 1.16.0-py36h99e49ec_1
numpy-base: 1.16.0-py36h2f8d375_1
openblas: 0.3.3-3
openblas-devel: 0.3.3-3
openssl: 1.1.1b-h7b6447c_1
pcre: 8.43-he6710b0_0
pip: 19.0.3-py36_0
protobuf: 3.4.0-py36_0
python: 3.6.8-h0371630_0
readline: 7.0-h7b6447c_5
setuptools: 40.8.0-py36_0
six: 1.12.0-py36_0
sqlite: 3.27.2-h7b6447c_0
swig: 3.0.12-h38cdd7d_3
tk: 8.6.8-hbc83047_0
wheel: 0.33.1-py36_0
xz: 5.2.4-h14c3975_4
zlib: 1.2.11-h7b6447c_3
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
WARNING: symlink_conda() is deprecated.
Collecting package metadata: ...working... done
Solving environment: ...working... done
Collecting package metadata: ...working... done
Solving environment: ...working... failed
Leaving build/test directories:
Work:
/home/thao/miniconda3/conda-bld/work
Test:
/home/thao/miniconda3/conda-bld/test_tmp
Leaving build/test environments:
Test:
source activate
/home/thao/miniconda3/conda-bld/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla
Build:
source activate /home/thao/miniconda3/conda-bld/_build_env
Traceback (most recent call last):
File
"/home/thao/miniconda3/lib/python3.7/site-packages/conda_build/environ.py",
line 753, in get_install_actions
actions = install_actions(prefix, index, specs, force=True)
File "/home/thao/miniconda3/lib/python3.7/site-packages/conda/common/io.py",
line 88, in decorated
return f(*args, **kwds)
File "/home/thao/miniconda3/lib/python3.7/site-packages/conda/plan.py", line
473, in install_actions
txn = solver.solve_for_transaction(prune=prune, ignore_pinned=not pinned)
File "/home/thao/miniconda3/lib/python3.7/site-packages/conda/core/solve.py",
line 107, in solve_for_transaction
force_remove, force_reinstall)
File "/home/thao/miniconda3/lib/python3.7/site-packages/conda/core/solve.py",
line 145, in solve_for_diff
force_remove)
File "/home/thao/miniconda3/lib/python3.7/site-packages/conda/core/solve.py",
line 242, in solve_final_state
ssc = self._run_sat(ssc)
File "/home/thao/miniconda3/lib/python3.7/site-packages/conda/common/io.py",
line 88, in decorated
return f(*args, **kwds)
File "/home/thao/miniconda3/lib/python3.7/site-packages/conda/core/solve.py",
line 475, in _run_sat
conflicting_specs = ssc.r.get_conflicting_specs(tuple(final_environment_specs))
File "/home/thao/miniconda3/lib/python3.7/site-packages/conda/resolve.py",
line 852, in get_conflicting_specs
reduced_index = self.get_reduced_index(specs)
File "/home/thao/miniconda3/lib/python3.7/site-packages/conda/common/io.py",
line 88, in decorated
return f(*args, **kwds)
File "/home/thao/miniconda3/lib/python3.7/site-packages/conda/resolve.py",
line 356, in get_reduced_index
specs, features = self.verify_specs(specs)
File "/home/thao/miniconda3/lib/python3.7/site-packages/conda/resolve.py",
line 244, in verify_specs
raise ResolvePackageNotFound(bad_deps)
conda.exceptions.ResolvePackageNotFound:
- onnx[version='>=1.3.0']
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/thao/miniconda3/bin/conda-build", line 11, in <module>
sys.exit(main())
File
"/home/thao/miniconda3/lib/python3.7/site-packages/conda_build/cli/main_build.py",
line 456, in main
execute(sys.argv[1:])
File
"/home/thao/miniconda3/lib/python3.7/site-packages/conda_build/cli/main_build.py",
line 447, in execute
verify=args.verify, variants=args.variants)
File "/home/thao/miniconda3/lib/python3.7/site-packages/conda_build/api.py",
line 208, in build
notest=notest, need_source_download=need_source_download, variants=variants)
File "/home/thao/miniconda3/lib/python3.7/site-packages/conda_build/build.py",
line 2314, in build_tree
notest=notest,
File "/home/thao/miniconda3/lib/python3.7/site-packages/conda_build/build.py",
line 1397, in build
create_build_envs(m, notest)
File "/home/thao/miniconda3/lib/python3.7/site-packages/conda_build/build.py",
line 1281, in create_build_envs
raise e
File "/home/thao/miniconda3/lib/python3.7/site-packages/conda_build/build.py",
line 1271, in create_build_envs
channel_urls=tuple(m.config.channel_urls))
File
"/home/thao/miniconda3/lib/python3.7/site-packages/conda_build/environ.py",
line 755, in get_install_actions
raise DependencyNeedsBuildingError(exc, subdir=subdir)
conda_build.exceptions.DependencyNeedsBuildingError: Unsatisfiable dependencies
for platform linux-64: \{"onnx[version='>=1.3.0']"}
thao@thao-OptiPlex-5060:~/Documents/Singa/incubator-singa$ conda build
tool/conda/singa/ --python 3.6
WARNING: The conda.compat module is deprecated and will be removed in a future
release.
No numpy version specified in conda_build_config.yaml. Falling back to default
numpy value of 1.11
WARNING:conda_build.metadata:No numpy version specified in
conda_build_config.yaml. Falling back to default numpy value of 1.11
Cloning into '/home/thao/miniconda3/conda-bld/singa_1554947642062/work'...
done.
checkout: 'HEAD'
Your branch is up to date with 'origin/_conda_cache_origin_head'.
Submodule 'rafiki' (https://github.com/nginyc/rafiki.git) registered for path
'rafiki'
Cloning into
'/home/thao/miniconda3/conda-bld/singa_1554947642062/work/rafiki'...
Submodule path 'rafiki': checked out 'b027c588f27ed4e801e8e300785b0eca230b5167'
==> git log -n1 <==
commit 5f14f3dbc005a64fdbc508bff63db92e6d3e05b6
Merge: 8072ecdb 73a3b471
Author: Wang Wei <wangwei...@gmail.com>
Date: Sun Apr 7 13:11:35 2019 +0800
Merge branch 'master' of https://gitbox.apache.org/repos/asf/incubator-singa
==> git describe --tags --dirty <==
2.0.0rc1
==> git status <==
On branch _conda_cache_origin_head
Your branch is up to date with 'origin/_conda_cache_origin_head'.
nothing to commit, working tree clean
Adding in variants from internal_defaults
INFO:conda_build.variants:Adding in variants from internal_defaults
Adding in variants from
/home/thao/Documents/Singa/incubator-singa/tool/conda/singa/conda_build_config.yaml
INFO:conda_build.variants:Adding in variants from
/home/thao/Documents/Singa/incubator-singa/tool/conda/singa/conda_build_config.yaml
Adding in variants from config.variant
INFO:conda_build.variants:Adding in variants from config.variant
/home/thao/miniconda3/lib/python3.7/site-packages/conda_build/environ.py:414:
UserWarning: The environment variable 'CUDA' is undefined.
UserWarning
Attempting to finalize metadata for singa
INFO:conda_build.metadata:Attempting to finalize metadata for singa
Collecting package metadata: ...working... done
Solving environment: ...working... done
Collecting package metadata: ...working... done
Solving environment: ...working... done
Collecting package metadata: ...working... done
Solving environment: ...working... done
Collecting package metadata: ...working... done
Solving environment: ...working... done
BUILD START: ['singa-2.0.0rc1-cpu.tar.bz2']
Collecting package metadata: ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location:
/home/thao/miniconda3/conda-bld/singa_1554947642062/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh
The following NEW packages will be INSTALLED:
blas: 1.0-openblas
ca-certificates: 2019.1.23-0
certifi: 2019.3.9-py36_0
gflags: 2.2.2-he6710b0_0
glog: 0.3.5-hf484d3e_1
intel-openmp: 2018.0.3-0
libedit: 3.1.20181209-hc058e9b_0
libffi: 3.2.1-hd88cf55_4
libgcc-ng: 8.2.0-hdf63c60_1
libgfortran-ng: 7.3.0-hdf63c60_0
libmklml: 2018.0.3-0
libopenblas: 0.3.3-h5a2b251_3
libprotobuf: 3.4.0-0
libstdcxx-ng: 8.2.0-hdf63c60_1
mkl-dnn: 0.14-h6bb024c_0
ncurses: 6.1-he6710b0_1
nomkl: 3.0-0
numpy: 1.16.0-py36h99e49ec_1
numpy-base: 1.16.0-py36h2f8d375_1
openblas: 0.3.3-3
openblas-devel: 0.3.3-3
openssl: 1.1.1b-h7b6447c_1
pcre: 8.43-he6710b0_0
pip: 19.0.3-py36_0
protobuf: 3.4.0-py36_0
python: 3.6.8-h0371630_0
readline: 7.0-h7b6447c_5
setuptools: 40.8.0-py36_0
six: 1.12.0-py36_0
sqlite: 3.27.2-h7b6447c_0
swig: 3.0.12-h38cdd7d_3
tk: 8.6.8-hbc83047_0
wheel: 0.33.1-py36_0
xz: 5.2.4-h14c3975_4
zlib: 1.2.11-h7b6447c_3
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
WARNING: symlink_conda() is deprecated.
Collecting package metadata: ...working... done
Solving environment: ...working... done
Collecting package metadata: ...working... done
Solving environment: ...working... failed
Leaving build/test directories:
Work:
/home/thao/miniconda3/conda-bld/work
Test:
/home/thao/miniconda3/conda-bld/test_tmp
Leaving build/test environments:
Test:
source activate
/home/thao/miniconda3/conda-bld/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla
Build:
source activate /home/thao/miniconda3/conda-bld/_build_env
Traceback (most recent call last):
File
"/home/thao/miniconda3/lib/python3.7/site-packages/conda_build/environ.py",
line 753, in get_install_actions
actions = install_actions(prefix, index, specs, force=True)
File "/home/thao/miniconda3/lib/python3.7/site-packages/conda/common/io.py",
line 88, in decorated
return f(*args, **kwds)
File "/home/thao/miniconda3/lib/python3.7/site-packages/conda/plan.py", line
473, in install_actions
txn = solver.solve_for_transaction(prune=prune, ignore_pinned=not pinned)
File "/home/thao/miniconda3/lib/python3.7/site-packages/conda/core/solve.py",
line 107, in solve_for_transaction
force_remove, force_reinstall)
File "/home/thao/miniconda3/lib/python3.7/site-packages/conda/core/solve.py",
line 145, in solve_for_diff
force_remove)
File "/home/thao/miniconda3/lib/python3.7/site-packages/conda/core/solve.py",
line 242, in solve_final_state
ssc = self._run_sat(ssc)
File "/home/thao/miniconda3/lib/python3.7/site-packages/conda/common/io.py",
line 88, in decorated
return f(*args, **kwds)
File "/home/thao/miniconda3/lib/python3.7/site-packages/conda/core/solve.py",
line 475, in _run_sat
conflicting_specs = ssc.r.get_conflicting_specs(tuple(final_environment_specs))
File "/home/thao/miniconda3/lib/python3.7/site-packages/conda/resolve.py",
line 852, in get_conflicting_specs
reduced_index = self.get_reduced_index(specs)
File "/home/thao/miniconda3/lib/python3.7/site-packages/conda/common/io.py",
line 88, in decorated
return f(*args, **kwds)
File "/home/thao/miniconda3/lib/python3.7/site-packages/conda/resolve.py",
line 356, in get_reduced_index
specs, features = self.verify_specs(specs)
File "/home/thao/miniconda3/lib/python3.7/site-packages/conda/resolve.py",
line 244, in verify_specs
raise ResolvePackageNotFound(bad_deps)
conda.exceptions.ResolvePackageNotFound:
- onnx[version='>=1.3.0']
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/thao/miniconda3/bin/conda-build", line 11, in <module>
sys.exit(main())
File
"/home/thao/miniconda3/lib/python3.7/site-packages/conda_build/cli/main_build.py",
line 456, in main
execute(sys.argv[1:])
File
"/home/thao/miniconda3/lib/python3.7/site-packages/conda_build/cli/main_build.py",
line 447, in execute
verify=args.verify, variants=args.variants)
File "/home/thao/miniconda3/lib/python3.7/site-packages/conda_build/api.py",
line 208, in build
notest=notest, need_source_download=need_source_download, variants=variants)
File "/home/thao/miniconda3/lib/python3.7/site-packages/conda_build/build.py",
line 2314, in build_tree
notest=notest,
File "/home/thao/miniconda3/lib/python3.7/site-packages/conda_build/build.py",
line 1397, in build
create_build_envs(m, notest)
File "/home/thao/miniconda3/lib/python3.7/site-packages/conda_build/build.py",
line 1281, in create_build_envs
raise e
File "/home/thao/miniconda3/lib/python3.7/site-packages/conda_build/build.py",
line 1271, in create_build_envs
channel_urls=tuple(m.config.channel_urls))
File
"/home/thao/miniconda3/lib/python3.7/site-packages/conda_build/environ.py",
line 755, in get_install_actions
raise DependencyNeedsBuildingError(exc, subdir=subdir)
conda_build.exceptions.DependencyNeedsBuildingError: Unsatisfiable dependencies
for platform linux-64: \{"onnx[version='>=1.3.0']"}
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