I created a ticket for this: https://issues.apache.org/jira/browse/SPARK-4757
Jianshi On Fri, Dec 5, 2014 at 1:31 PM, Jianshi Huang <jianshi.hu...@gmail.com> wrote: > Correction: > > According to Liancheng, this hotfix might be the root cause: > > > https://github.com/apache/spark/commit/38cb2c3a36a5c9ead4494cbc3dde008c2f0698ce > > Jianshi > > On Fri, Dec 5, 2014 at 12:45 PM, Jianshi Huang <jianshi.hu...@gmail.com> > wrote: > >> Looks like the datanucleus*.jar shouldn't appear in the hdfs path in >> Yarn-client mode. >> >> Maybe this patch broke yarn-client. >> >> >> https://github.com/apache/spark/commit/a975dc32799bb8a14f9e1c76defaaa7cfbaf8b53 >> >> Jianshi >> >> On Fri, Dec 5, 2014 at 12:02 PM, Jianshi Huang <jianshi.hu...@gmail.com> >> wrote: >> >>> Actually my HADOOP_CLASSPATH has already been set to include >>> /etc/hadoop/conf/* >>> >>> export >>> HADOOP_CLASSPATH=/etc/hbase/conf/hbase-site.xml:/usr/lib/hbase/lib/hbase-protocol.jar:$(hbase >>> classpath) >>> >>> Jianshi >>> >>> On Fri, Dec 5, 2014 at 11:54 AM, Jianshi Huang <jianshi.hu...@gmail.com> >>> wrote: >>> >>>> Looks like somehow Spark failed to find the core-site.xml in >>>> /et/hadoop/conf >>>> >>>> I've already set the following env variables: >>>> >>>> export YARN_CONF_DIR=/etc/hadoop/conf >>>> export HADOOP_CONF_DIR=/etc/hadoop/conf >>>> export HBASE_CONF_DIR=/etc/hbase/conf >>>> >>>> Should I put $HADOOP_CONF_DIR/* to HADOOP_CLASSPATH? >>>> >>>> Jianshi >>>> >>>> On Fri, Dec 5, 2014 at 11:37 AM, Jianshi Huang <jianshi.hu...@gmail.com >>>> > wrote: >>>> >>>>> I got the following error during Spark startup (Yarn-client mode): >>>>> >>>>> 14/12/04 19:33:58 INFO Client: Uploading resource >>>>> file:/x/home/jianshuang/spark/spark-latest/lib/datanucleus-api-jdo-3.2.6.jar >>>>> -> >>>>> hdfs://stampy/user/jianshuang/.sparkStaging/application_1404410683830_531767/datanucleus-api-jdo-3.2.6.jar >>>>> java.lang.IllegalArgumentException: Wrong FS: >>>>> hdfs://stampy/user/jianshuang/.sparkStaging/application_1404410683830_531767/datanucleus-api-jdo-3.2.6.jar, >>>>> expected: file:/// >>>>> at >>>>> org.apache.hadoop.fs.FileSystem.checkPath(FileSystem.java:643) >>>>> at >>>>> org.apache.hadoop.fs.RawLocalFileSystem.pathToFile(RawLocalFileSystem.java:79) >>>>> at >>>>> org.apache.hadoop.fs.RawLocalFileSystem.deprecatedGetFileStatus(RawLocalFileSystem.java:506) >>>>> at >>>>> org.apache.hadoop.fs.RawLocalFileSystem.getFileLinkStatusInternal(RawLocalFileSystem.java:724) >>>>> at >>>>> org.apache.hadoop.fs.RawLocalFileSystem.getFileStatus(RawLocalFileSystem.java:501) >>>>> at >>>>> org.apache.hadoop.fs.FilterFileSystem.getFileStatus(FilterFileSystem.java:397) >>>>> at >>>>> org.apache.spark.deploy.yarn.ClientDistributedCacheManager.addResource(ClientDistributedCacheManager.scala:67) >>>>> at >>>>> org.apache.spark.deploy.yarn.ClientBase$$anonfun$prepareLocalResources$5.apply(ClientBase.scala:257) >>>>> at >>>>> org.apache.spark.deploy.yarn.ClientBase$$anonfun$prepareLocalResources$5.apply(ClientBase.scala:242) >>>>> at scala.Option.foreach(Option.scala:236) >>>>> at >>>>> org.apache.spark.deploy.yarn.ClientBase$class.prepareLocalResources(ClientBase.scala:242) >>>>> at >>>>> org.apache.spark.deploy.yarn.Client.prepareLocalResources(Client.scala:35) >>>>> at >>>>> org.apache.spark.deploy.yarn.ClientBase$class.createContainerLaunchContext(ClientBase.scala:350) >>>>> at >>>>> org.apache.spark.deploy.yarn.Client.createContainerLaunchContext(Client.scala:35) >>>>> at >>>>> org.apache.spark.deploy.yarn.Client.submitApplication(Client.scala:80) >>>>> at >>>>> org.apache.spark.scheduler.cluster.YarnClientSchedulerBackend.start(YarnClientSchedulerBackend.scala:57) >>>>> at >>>>> org.apache.spark.scheduler.TaskSchedulerImpl.start(TaskSchedulerImpl.scala:140) >>>>> at org.apache.spark.SparkContext.<init>(SparkContext.scala:335) >>>>> at >>>>> org.apache.spark.repl.SparkILoop.createSparkContext(SparkILoop.scala:986) >>>>> at $iwC$$iwC.<init>(<console>:9) >>>>> at $iwC.<init>(<console>:18) >>>>> at <init>(<console>:20) >>>>> at .<init>(<console>:24) >>>>> >>>>> I'm using latest Spark built from master HEAD yesterday. Is this a bug? >>>>> >>>>> -- >>>>> Jianshi Huang >>>>> >>>>> LinkedIn: jianshi >>>>> Twitter: @jshuang >>>>> Github & Blog: http://huangjs.github.com/ >>>>> >>>> >>>> >>>> >>>> -- >>>> Jianshi Huang >>>> >>>> LinkedIn: jianshi >>>> Twitter: @jshuang >>>> Github & Blog: http://huangjs.github.com/ >>>> >>> >>> >>> >>> -- >>> Jianshi Huang >>> >>> LinkedIn: jianshi >>> Twitter: @jshuang >>> Github & Blog: http://huangjs.github.com/ >>> >> >> >> >> -- >> Jianshi Huang >> >> LinkedIn: jianshi >> Twitter: @jshuang >> Github & Blog: http://huangjs.github.com/ >> > > > > -- > Jianshi Huang > > LinkedIn: jianshi > Twitter: @jshuang > Github & Blog: http://huangjs.github.com/ > -- Jianshi Huang LinkedIn: jianshi Twitter: @jshuang Github & Blog: http://huangjs.github.com/
