Apologize for the format, somehow it got messed up and linefeed were removed.
Here's a reformatted version.
Hi All,
I tried to include necessary libraries in SPARK_CLASSPATH in spark-env.sh to
include auxiliaries JARs and datanucleus*.jars from Hive, however, when I run
HiveContext, it gives me the following error:
Caused by: java.lang.ClassNotFoundException:
com.esotericsoftware.shaded.org.objenesis.strategy.InstantiatorStrategy
I have checked the JARs with (jar tf), looks like this is already included
(shaded) in the assembly JAR (spark-assembly-1.2.0-hadoop2.4.1.jar) which is
configured in the System classpath already. I couldn't figure out what is going
on with the shading on the esotericsoftware JARs here. Any help is appreciated.
How to reproduce the problem?
Run the following 3 statements in spark-shell ( This is how I launched my
spark-shell. cd /opt/spark; ./bin/spark-shell --master yarn --deploy-mode
client --queue research --driver-memory 1024M)
import org.apache.spark.SparkContext
val hiveContext = new org.apache.spark.sql.hive.HiveContext(sc)
hiveContext.hql("CREATE TABLE IF NOT EXISTS spark_hive_test_table (key INT,
value STRING)")
A reference of my environment.
Apache Hadoop 2.4.1
Apache Hive 0.13.1
Apache Spark branch-1.2 (installed under /opt/spark/, and config under
/etc/spark/)
Maven build command:
mvn -U -X -Phadoop-2.4 -Pyarn -Phive -Phive-0.13.1 -Dhadoop.version=2.4.1
-Dyarn.version=2.4.1 -Dhive.version=0.13.1 -DskipTests install
Source Code commit label: eb4d457a870f7a281dc0267db72715cd00245e82
My spark-env.sh have the following contents when I executed spark-shell:
> HADOOP_HOME=/opt/hadoop/
> HIVE_HOME=/opt/hive/
> HADOOP_CONF_DIR=/etc/hadoop/
> YARN_CONF_DIR=/etc/hadoop/
> HIVE_CONF_DIR=/etc/hive/
> HADOOP_SNAPPY_JAR=$(find $HADOOP_HOME/share/hadoop/common/lib/ -type f -name
> "snappy-java-*.jar")
> HADOOP_LZO_JAR=$(find $HADOOP_HOME/share/hadoop/common/lib/ -type f -name
> "hadoop-lzo-*.jar")
> SPARK_YARN_DIST_FILES=/user/spark/libs/spark-assembly-1.2.0-hadoop2.4.1.jar
> export JAVA_LIBRARY_PATH=$JAVA_LIBRARY_PATH:$HADOOP_HOME/lib/native
> export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$HADOOP_HOME/lib/native
> export SPARK_LIBRARY_PATH=$SPARK_LIBRARY_PATH:$HADOOP_HOME/lib/native
> export
> SPARK_CLASSPATH=$SPARK_CLASSPATH:$HADOOP_SNAPPY_JAR:$HADOOP_LZO_JAR:$HIVE_CONF_DIR:/opt/hive/lib/datanucleus-api-jdo-3.2.6.jar:/opt/hive/lib/datanucleus-core-3.2.10.jar:/opt/hive/lib/datanucleus-rdbms-3.2.9.jar
> Here's what I see from my stack trace.
> warning: there were 1 deprecation warning(s); re-run with -deprecation for
> details
> Hive history
> file=/home/hive/log/alti-test-01/hive_job_log_b5db9539-4736-44b3-a601-04fa77cb6730_1220828461.txt
> java.lang.NoClassDefFoundError:
> com/esotericsoftware/shaded/org/objenesis/strategy/InstantiatorStrategy
> at org.apache.hadoop.hive.ql.exec.Utilities.<clinit>(Utilities.java:925)
> at
> org.apache.hadoop.hive.ql.parse.SemanticAnalyzer.validate(SemanticAnalyzer.java:9718)
> at
> org.apache.hadoop.hive.ql.parse.SemanticAnalyzer.validate(SemanticAnalyzer.java:9712)
> at org.apache.hadoop.hive.ql.Driver.compile(Driver.java:434)
> at org.apache.hadoop.hive.ql.Driver.compile(Driver.java:322)
> at org.apache.hadoop.hive.ql.Driver.compileInternal(Driver.java:975)
> at org.apache.hadoop.hive.ql.Driver.runInternal(Driver.java:1040)
> at org.apache.hadoop.hive.ql.Driver.run(Driver.java:911)
> at org.apache.hadoop.hive.ql.Driver.run(Driver.java:901)
> at org.apache.spark.sql.hive.HiveContext.runHive(HiveContext.scala:305)
> at
> org.apache.spark.sql.hive.HiveContext.runSqlHive(HiveContext.scala:276)
> at
> org.apache.spark.sql.hive.execution.NativeCommand.sideEffectResult$lzycompute(NativeCommand.scala:35)
> at
> org.apache.spark.sql.hive.execution.NativeCommand.sideEffectResult(NativeCommand.scala:35)
> at
> org.apache.spark.sql.execution.Command$class.execute(commands.scala:46)
> at
> org.apache.spark.sql.hive.execution.NativeCommand.execute(NativeCommand.scala:30)
> at
> org.apache.spark.sql.SQLContext$QueryExecution.toRdd$lzycompute(SQLContext.scala:425)
> at
> org.apache.spark.sql.SQLContext$QueryExecution.toRdd(SQLContext.scala:425)
> at
> org.apache.spark.sql.SchemaRDDLike$class.$init$(SchemaRDDLike.scala:58)
> at org.apache.spark.sql.SchemaRDD.<init>(SchemaRDD.scala:108)
> at org.apache.spark.sql.hive.HiveContext.hiveql(HiveContext.scala:102)
> at org.apache.spark.sql.hive.HiveContext.hql(HiveContext.scala:106)
> at $iwC$$iwC$$iwC$$iwC.<init>(<console>:16)
> at $iwC$$iwC$$iwC.<init>(<console>:21)
> at $iwC$$iwC.<init>(<console>:23)
> at $iwC.<init>(<console>:25)
> at <init>(<console>:27)
> at .<init>(<console>:31)
> at .<clinit>(<console>)
> at .<init>(<console>:7)
> at .<clinit>(<console>)
> at $print(<console>)
> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
> at
> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
> at
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
> at java.lang.reflect.Method.invoke(Method.java:606)
> at
> org.apache.spark.repl.SparkIMain$ReadEvalPrint.call(SparkIMain.scala:852)
> at
> org.apache.spark.repl.SparkIMain$Request.loadAndRun(SparkIMain.scala:1125)
> at
> org.apache.spark.repl.SparkIMain.loadAndRunReq$1(SparkIMain.scala:674)
> at org.apache.spark.repl.SparkIMain.interpret(SparkIMain.scala:705)
> at org.apache.spark.repl.SparkIMain.interpret(SparkIMain.scala:669)
> at
> org.apache.spark.repl.SparkILoop.reallyInterpret$1(SparkILoop.scala:828)
> at
> org.apache.spark.repl.SparkILoop.interpretStartingWith(SparkILoop.scala:873)
> at org.apache.spark.repl.SparkILoop.command(SparkILoop.scala:785)
> at org.apache.spark.repl.SparkILoop.processLine$1(SparkILoop.scala:628)
> at org.apache.spark.repl.SparkILoop.innerLoop$1(SparkILoop.scala:636)
> at org.apache.spark.repl.SparkILoop.loop(SparkILoop.scala:641)
> at
> org.apache.spark.repl.SparkILoop$$anonfun$process$1.apply$mcZ$sp(SparkILoop.scala:968)
> at
> org.apache.spark.repl.SparkILoop$$anonfun$process$1.apply(SparkILoop.scala:916)
> at
> org.apache.spark.repl.SparkILoop$$anonfun$process$1.apply(SparkILoop.scala:916)
> at
> scala.tools.nsc.util.ScalaClassLoader$.savingContextLoader(ScalaClassLoader.scala:135)
> at org.apache.spark.repl.SparkILoop.process(SparkILoop.scala:916)
> at org.apache.spark.repl.SparkILoop.process(SparkILoop.scala:1011)
> at org.apache.spark.repl.Main$.main(Main.scala:31)
> at org.apache.spark.repl.Main.main(Main.scala)
> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
> at
> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
> at
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
> at java.lang.reflect.Method.invoke(Method.java:606)
> at org.apache.spark.deploy.SparkSubmit$.launch(SparkSubmit.scala:353)
> at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:75)
> at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala)
> Caused by: java.lang.ClassNotFoundException:
> com.esotericsoftware.shaded.org.objenesis.strategy.InstantiatorStrategy
> at java.net.URLClassLoader$1.run(URLClassLoader.java:366)
> at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
> at java.security.AccessController.doPrivileged(Native Method)
> at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
> at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
> at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
> at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
> ... 61 more
>
>
