On Sat, Jan 31, 2015 at 8:23 PM, Dileepa Jayakody <[email protected]> wrote: > Hi Rupert, > > Thanks for looking into this.. > > The Marmotta version I'm using is 3.3.0 and the query can be executed from > Marmotta ui.
How have you got the SPARQL Query sent by the Yard without changing the log level, or have you just tried a random SPARQL query? > Can I please know how to set log levels for components in Stanbol? You have to make a configuration of the "org.apache.sling.commons.log.LogManager.factory.config" service. Typically you want to set the log level (DEBUG) and the package of the components you want to log in that level (`org.apache.stanbol.entityhub.yard.sesame` based on the error log in your first mail). You could also set a different log file if you want to have those logs in its own file. best Rupert > > Thanks, > Dileepa > > > > > On Tue, Jan 27, 2015 at 5:50 PM, Rupert Westenthaler < > [email protected]> wrote: > >> Hi Dileepa, >> >> While I used such a setup for dereferencing Entity Information I never >> use Sesame Yard with Marmotta KiWi for Entity Linking. >> >> Based on the exception the error is happening within KiWi. For >> investigating this one needs more information. >> >> (1) set the Logging for the SesameYard to DEBUG. This will log the >> actual SPARQL query >> (2) check the exact version of Marmotta >> (3) you should also try to execute the query directly on Marmotta (via >> the marmotta UI) >> >> best >> Rupert >> >> >> On Tue, Jan 27, 2015 at 12:55 PM, Dileepa Jayakody >> <[email protected]> wrote: >> > Hi All, >> > >> > I'm working in integrating a Marmotta kiwi instance as the entityhub in >> > Stanbol and using it for entity linking. I have registered a kiwi >> > repository as per [1] and configured a Sesame Yard (id : >> > marmotta-sesame-yard) as per [2] and the corresponding Managed Site using >> > the yard id : marmotta-sesame-yard. >> > >> > Then to use this managed site to link entities with the entity mentions >> in >> > the content I configured a Entityhub linking engine (id: >> > marmotta-kiwi-linking) and added it in my enhancement chain after >> > language-detect and stanfordnlp-engine. >> > >> > I get below error at entity linking [3] in my enhancement chain. >> > >> > Can someone please guide me on how to properly configure a Sesame Yard >> Site >> > with Marmotta kiwi instance and use it for entity linking? >> > I'm using the 1.0.0-SNAPSHOT version of the trunk for my usecase >> > >> > Thanks, >> > Dileepa >> > >> > [1] >> > >> https://stanbol.apache.org/docs/trunk/utils/marmotta-kiwi-repository-service >> > [2] >> > >> https://stanbol.apache.org/docs/trunk/components/entityhub/managedsite.html >> > >> > [3] error : >> > >> > org.apache.stanbol.enhancer.servicesapi.ChainException: Enhancement >> > Chain failed because of required Engine 'marmotta-kiwi-linking' failed >> > with Message: Unable to process ContentItem >> > '<urn:content-item-sha1-b0e0272b7288a89ca6fe1a8f4312eee566f45a71>' >> > with Enhancement Engine 'marmotta-kiwi-linking' because the engine was >> > unable to process the content (Engine class: >> > >> org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine)(Reason: >> > Exception while searchign for [test, linking]@[null, en]in the >> > ReferencedSite marmottasesamesite)! >> > at >> org.apache.stanbol.enhancer.jobmanager.event.impl.EventJobManagerImpl.enhanceContent(EventJobManagerImpl.java:204) >> > at >> org.apache.stanbol.enhancer.jersey.resource.AbstractEnhancerResource.enhance(AbstractEnhancerResource.java:231) >> > at >> org.apache.stanbol.enhancer.jersey.resource.GenericEnhancerUiResource.enhanceFromForm(GenericEnhancerUiResource.java:151) >> > at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) >> > at >> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) >> > at >> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) >> > at java.lang.reflect.Method.invoke(Method.java:606) >> > at >> org.glassfish.jersey.server.model.internal.ResourceMethodInvocationHandlerFactory$1.invoke(ResourceMethodInvocationHandlerFactory.java:81) >> > at >> org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher$1.run(AbstractJavaResourceMethodDispatcher.java:151) >> > at >> org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher.invoke(AbstractJavaResourceMethodDispatcher.java:171) >> > at >> org.glassfish.jersey.server.model.internal.JavaResourceMethodDispatcherProvider$ResponseOutInvoker.doDispatch(JavaResourceMethodDispatcherProvider.java:152) >> > at >> org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher.dispatch(AbstractJavaResourceMethodDispatcher.java:104) >> > at >> org.glassfish.jersey.server.model.ResourceMethodInvoker.invoke(ResourceMethodInvoker.java:406) >> > at >> org.glassfish.jersey.server.model.ResourceMethodInvoker.apply(ResourceMethodInvoker.java:350) >> > at >> org.glassfish.jersey.server.model.ResourceMethodInvoker.apply(ResourceMethodInvoker.java:106) >> > at >> org.glassfish.jersey.server.ServerRuntime$1.run(ServerRuntime.java:259) >> > at org.glassfish.jersey.internal.Errors$1.call(Errors.java:271) >> > at org.glassfish.jersey.internal.Errors$1.call(Errors.java:267) >> > at org.glassfish.jersey.internal.Errors.process(Errors.java:315) >> > at org.glassfish.jersey.internal.Errors.process(Errors.java:297) >> > at org.glassfish.jersey.internal.Errors.process(Errors.java:267) >> > at >> org.glassfish.jersey.process.internal.RequestScope.runInScope(RequestScope.java:320) >> > at >> org.glassfish.jersey.server.ServerRuntime.process(ServerRuntime.java:236) >> > at >> org.glassfish.jersey.server.ApplicationHandler.handle(ApplicationHandler.java:1028) >> > at >> org.glassfish.jersey.servlet.WebComponent.service(WebComponent.java:373) >> > at >> org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:381) >> > at >> org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:344) >> > at >> org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:219) >> > at >> org.apache.felix.http.base.internal.handler.ServletHandler.doHandle(ServletHandler.java:339) >> > at >> org.apache.felix.http.base.internal.handler.ServletHandler.handle(ServletHandler.java:300) >> > at >> org.apache.felix.http.base.internal.dispatch.ServletPipeline.handle(ServletPipeline.java:93) >> > at >> org.apache.felix.http.base.internal.dispatch.InvocationFilterChain.doFilter(InvocationFilterChain.java:50) >> > at >> org.apache.felix.http.base.internal.dispatch.HttpFilterChain.doFilter(HttpFilterChain.java:31) >> > at >> com.thetransactioncompany.cors.CORSFilter.doFilter(CORSFilter.java:208) >> > at >> com.thetransactioncompany.cors.CORSFilter.doFilter(CORSFilter.java:271) >> > at >> org.apache.stanbol.commons.cors.StanbolCorsFilter.doFilter(StanbolCorsFilter.java:68) >> > at >> org.apache.felix.http.base.internal.handler.FilterHandler.doHandle(FilterHandler.java:108) >> > at >> org.apache.felix.http.base.internal.handler.FilterHandler.handle(FilterHandler.java:80) >> > at >> org.apache.felix.http.base.internal.dispatch.InvocationFilterChain.doFilter(InvocationFilterChain.java:46) >> > at >> org.apache.felix.http.base.internal.dispatch.HttpFilterChain.doFilter(HttpFilterChain.java:31) >> > at >> org.apache.felix.http.base.internal.handler.FilterHandler.handle(FilterHandler.java:84) >> > at >> org.apache.felix.http.base.internal.dispatch.InvocationFilterChain.doFilter(InvocationFilterChain.java:46) >> > at >> org.apache.felix.http.base.internal.dispatch.HttpFilterChain.doFilter(HttpFilterChain.java:31) >> > at >> org.apache.stanbol.commons.httpqueryheaders.impl.QueryHeadersFilter.doFilter(QueryHeadersFilter.java:84) >> > at >> org.apache.felix.http.base.internal.handler.FilterHandler.doHandle(FilterHandler.java:108) >> > at >> org.apache.felix.http.base.internal.handler.FilterHandler.handle(FilterHandler.java:80) >> > at >> org.apache.felix.http.base.internal.dispatch.InvocationFilterChain.doFilter(InvocationFilterChain.java:46) >> > at >> org.apache.felix.http.base.internal.dispatch.HttpFilterChain.doFilter(HttpFilterChain.java:31) >> > at >> org.apache.stanbol.commons.web.resources.ResourceServingFilter.doFilterHttp(ResourceServingFilter.java:148) >> > at >> org.apache.stanbol.commons.web.resources.ResourceServingFilter.doFilter(ResourceServingFilter.java:91) >> > at >> org.apache.felix.http.base.internal.handler.FilterHandler.doHandle(FilterHandler.java:108) >> > at >> org.apache.felix.http.base.internal.handler.FilterHandler.handle(FilterHandler.java:80) >> > at >> org.apache.felix.http.base.internal.dispatch.InvocationFilterChain.doFilter(InvocationFilterChain.java:46) >> > at >> org.apache.felix.http.base.internal.dispatch.HttpFilterChain.doFilter(HttpFilterChain.java:31) >> > at >> org.apache.stanbol.commons.security.auth.AuthenticatingFilter$1.run(AuthenticatingFilter.java:208) >> > at java.security.AccessController.doPrivileged(Native Method) >> > at javax.security.auth.Subject.doAsPrivileged(Subject.java:536) >> > at >> org.apache.stanbol.commons.security.auth.AuthenticatingFilter.doFilter(AuthenticatingFilter.java:177) >> > at >> org.apache.felix.http.base.internal.handler.FilterHandler.doHandle(FilterHandler.java:108) >> > at >> org.apache.felix.http.base.internal.handler.FilterHandler.handle(FilterHandler.java:80) >> > at >> org.apache.felix.http.base.internal.dispatch.InvocationFilterChain.doFilter(InvocationFilterChain.java:46) >> > at >> org.apache.felix.http.base.internal.dispatch.HttpFilterChain.doFilter(HttpFilterChain.java:31) >> > at >> org.apache.felix.http.base.internal.dispatch.FilterPipeline.dispatch(FilterPipeline.java:76) >> > at >> org.apache.felix.http.base.internal.dispatch.Dispatcher.dispatch(Dispatcher.java:49) >> > at >> org.apache.felix.http.base.internal.DispatcherServlet.service(DispatcherServlet.java:67) >> > at javax.servlet.http.HttpServlet.service(HttpServlet.java:722) >> > at >> org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:684) >> > at >> org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:501) >> > at >> org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:229) >> > at >> org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1086) >> > at >> org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:428) >> > at >> org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:193) >> > at >> org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1020) >> > at >> org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:135) >> > at >> org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:255) >> > at >> org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:116) >> > at org.eclipse.jetty.server.Server.handle(Server.java:370) >> > at >> org.eclipse.jetty.server.AbstractHttpConnection.handleRequest(AbstractHttpConnection.java:494) >> > at >> org.eclipse.jetty.server.AbstractHttpConnection.content(AbstractHttpConnection.java:982) >> > at >> org.eclipse.jetty.server.AbstractHttpConnection$RequestHandler.content(AbstractHttpConnection.java:1043) >> > at >> org.eclipse.jetty.http.HttpParser.parseNext(HttpParser.java:865) >> > at >> org.eclipse.jetty.http.HttpParser.parseAvailable(HttpParser.java:240) >> > at >> org.eclipse.jetty.server.AsyncHttpConnection.handle(AsyncHttpConnection.java:82) >> > at >> org.eclipse.jetty.io.nio.SelectChannelEndPoint.handle(SelectChannelEndPoint.java:667) >> > at >> org.eclipse.jetty.io.nio.SelectChannelEndPoint$1.run(SelectChannelEndPoint.java:52) >> > at >> org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:608) >> > at >> org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:543) >> > at java.lang.Thread.run(Thread.java:745) >> > Caused by: java.lang.IllegalStateException: Exception while searchign >> > for [test, linking]@[null, en]in the ReferencedSite marmottasesamesite >> > at >> org.apache.stanbol.enhancer.engines.entityhublinking.ReferencedSiteSearcher.lookup(ReferencedSiteSearcher.java:127) >> > at >> org.apache.stanbol.enhancer.engines.entitylinking.impl.EntityLinker.performLookup(EntityLinker.java:686) >> > at >> org.apache.stanbol.enhancer.engines.entitylinking.impl.EntityLinker.lookupEntities(EntityLinker.java:614) >> > at >> org.apache.stanbol.enhancer.engines.entitylinking.impl.EntityLinker.process(EntityLinker.java:271) >> > at >> org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine.computeEnhancements(EntityLinkingEngine.java:265) >> > at >> org.apache.stanbol.enhancer.jobmanager.event.impl.EnhancementJobHandler.processEvent(EnhancementJobHandler.java:279) >> > at >> org.apache.stanbol.enhancer.jobmanager.event.impl.EnhancementJobHandler.handleEvent(EnhancementJobHandler.java:197) >> > at >> org.apache.felix.eventadmin.impl.handler.EventHandlerProxy.sendEvent(EventHandlerProxy.java:412) >> > at >> org.apache.felix.eventadmin.impl.tasks.SyncDeliverTasks.execute(SyncDeliverTasks.java:118) >> > at >> org.apache.felix.eventadmin.impl.tasks.AsyncDeliverTasks$TaskExecuter.run(AsyncDeliverTasks.java:132) >> > at >> EDU.oswego.cs.dl.util.concurrent.PooledExecutor$Worker.run(Unknown Source) >> > ... 1 more >> > Caused by: >> org.apache.stanbol.entityhub.servicesapi.site.ManagedSiteException: >> > Unable to execute findReferences query >> > at >> org.apache.stanbol.entityhub.site.managed.impl.YardSite.find(YardSite.java:115) >> > at >> org.apache.stanbol.enhancer.engines.entityhublinking.ReferencedSiteSearcher.lookup(ReferencedSiteSearcher.java:125) >> > ... 11 more >> > Caused by: org.apache.stanbol.entityhub.servicesapi.yard.YardException: >> > Unable to execute findReferences query >> > at >> org.apache.stanbol.entityhub.yard.sesame.SesameYard.find(SesameYard.java:755) >> > at >> org.apache.stanbol.entityhub.site.managed.impl.YardSite.find(YardSite.java:113) >> > ... 12 more >> > Caused by: org.openrdf.query.QueryEvaluationException: >> > java.lang.IllegalArgumentException: the values in this query have not >> > been created by the KiWi value factory >> > at >> org.openrdf.repository.sail.SailTupleQuery.evaluate(SailTupleQuery.java:67) >> > at >> org.apache.stanbol.entityhub.yard.sesame.SesameYard.executeSparqlFieldQuery(SesameYard.java:652) >> > at >> org.apache.stanbol.entityhub.yard.sesame.SesameYard.find(SesameYard.java:720) >> > ... 13 more >> > Caused by: org.openrdf.sail.SailException: >> > java.lang.IllegalArgumentException: the values in this query have not >> > been created by the KiWi value factory >> > at >> org.apache.marmotta.kiwi.sparql.sail.KiWiSparqlSailConnection.evaluate(KiWiSparqlSailConnection.java:92) >> > at >> org.openrdf.repository.sail.SailTupleQuery.evaluate(SailTupleQuery.java:60) >> > ... 15 more >> > Caused by: org.openrdf.query.QueryEvaluationException: >> > java.lang.IllegalArgumentException: the values in this query have not >> > been created by the KiWi value factory >> > at >> org.apache.marmotta.kiwi.sparql.evaluation.KiWiEvaluationStrategyImpl.evaluate(KiWiEvaluationStrategyImpl.java:113) >> > at >> org.openrdf.query.algebra.evaluation.impl.EvaluationStrategyImpl.evaluate(EvaluationStrategyImpl.java:583) >> > at >> org.openrdf.query.algebra.evaluation.impl.EvaluationStrategyImpl.evaluate(EvaluationStrategyImpl.java:197) >> > at >> org.openrdf.query.algebra.evaluation.impl.EvaluationStrategyImpl.evaluate(EvaluationStrategyImpl.java:662) >> > at >> org.openrdf.query.algebra.evaluation.impl.EvaluationStrategyImpl.evaluate(EvaluationStrategyImpl.java:577) >> > at >> org.openrdf.query.algebra.evaluation.impl.EvaluationStrategyImpl.evaluate(EvaluationStrategyImpl.java:197) >> > at >> org.openrdf.query.algebra.evaluation.impl.EvaluationStrategyImpl.evaluate(EvaluationStrategyImpl.java:689) >> > at >> org.apache.marmotta.kiwi.sparql.evaluation.KiWiEvaluationStrategyImpl.evaluate(KiWiEvaluationStrategyImpl.java:142) >> > at >> org.openrdf.query.algebra.evaluation.impl.EvaluationStrategyImpl.evaluate(EvaluationStrategyImpl.java:589) >> > at >> org.openrdf.query.algebra.evaluation.impl.EvaluationStrategyImpl.evaluate(EvaluationStrategyImpl.java:197) >> > at >> org.openrdf.query.algebra.evaluation.iterator.LeftJoinIterator.<init>(LeftJoinIterator.java:65) >> > at >> org.openrdf.query.algebra.evaluation.impl.EvaluationStrategyImpl.evaluate(EvaluationStrategyImpl.java:815) >> > at >> org.openrdf.query.algebra.evaluation.impl.EvaluationStrategyImpl.evaluate(EvaluationStrategyImpl.java:759) >> > at >> org.openrdf.query.algebra.evaluation.impl.EvaluationStrategyImpl.evaluate(EvaluationStrategyImpl.java:200) >> > at >> org.openrdf.query.algebra.evaluation.iterator.LeftJoinIterator.<init>(LeftJoinIterator.java:65) >> >> >> >> -- >> | Rupert Westenthaler [email protected] >> | Bodenlehenstraße 11 ++43-699-11108907 >> | A-5500 Bischofshofen >> | REDLINK.CO >> .......................................................................... >> | http://redlink.co/ >> -- | Rupert Westenthaler [email protected] | Bodenlehenstraße 11 ++43-699-11108907 | A-5500 Bischofshofen | REDLINK.CO .......................................................................... | http://redlink.co/
