Hello, I am trying to configure the Entityhub linking engine to use an Entityhub site with vocabulary from the Disease Ontology (http://disease-ontology.org/), but when I enhance text with it, labels from the ontology are not being annotated in the text. I am looking for advice on how to debug this. Here is what I've tried so far: - I used the genericrdf indexing tool to import the Disease Ontology into a new Entityhub site. When I used the entityhub /find API endpoint to search for the name "dengue hemorrhagic fever" a result from the Disease Ontology was returned. - I configured and built a EntityhubLinkingEngine and a WeightedChain containing the linking engine. They show up on the Stanbol admin site and felix console. These are the config files: https://github.com/ecohealthalliance/t11/tree/master/ansible/roles/stanbol/templates/enhancer - When I used the following API call to enhance text containing the same term I was able to find using the /find endpoint, the language detected is the only annotation returned.
curl -X POST -H "Accept: appltion/json" -H "Content-type: text/plain" --data "Avoid dengue hemorrhagic fever." http://54.197.175.163:3000/enhancer/chain/doidEnhancerChain This appears in the Stanbol error.log when the enhancement runs: ``` 31.05.2016 12:05:06.204 *INFO* [Thread-5] org.apache.stanbol.enhancer.engines.langid.LangIdEnhancementEngine language identified as no 31.05.2016 12:05:06.206 *INFO* [Thread-5] org.apache.stanbol.enhancer.engines.opennlp.impl.NamedEntityExtractionEnhancementEngine No NER Model for person and language no available! 31.05.2016 12:05:06.206 *INFO* [Thread-5] org.apache.stanbol.enhancer.engines.opennlp.impl.NamedEntityExtractionEnhancementEngine No NER Model for organization and language no available! 31.05.2016 12:05:06.207 *INFO* [Thread-5] org.apache.stanbol.enhancer.engines.opennlp.impl.NamedEntityExtractionEnhancementEngine No NER Model for location and language no available! 31.05.2016 12:05:06.210 *INFO* [Thread-5] org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine EntityLinking Statistics: 31.05.2016 12:05:06.210 *INFO* [Thread-5] org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine - overal: 2ms (text processing: 4%, lookup: 127%, matching 0%, ranking 0%, other -31%) 31.05.2016 12:05:06.210 *INFO* [Thread-5] org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine - Text Processing: 0.071543ms [count: 4 | time: 0.01788575ms (max:0.051031, min:0.005928)] 31.05.2016 12:05:06.211 *INFO* [Thread-5] org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine - Vocabulary Lookup: 2.541598ms [count: 3 | time: 0.8471993333333333ms (max:1.190281, min:0.667284)] 31.05.2016 12:05:06.211 *INFO* [Thread-5] org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine - cache hits: 1 (33.333332%) 31.05.2016 12:05:06.211 *INFO* [Thread-5] org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine - 0 query results (0 filtered - NaN%) 31.05.2016 12:05:06.211 *INFO* [Thread-5] org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine - Label Matching: 0.00218ms [count: 3 | time: 7.266666666666667E-4ms (max:7.55E-4, min:7.04E-4)] 31.05.2016 12:05:06.211 *INFO* [Thread-5] org.apache.stanbol.enhancer.engines.entitylinking.engine.EntityLinkingEngine - Suggestion Ranking: 0.0ms [count: 0 | time: NaNms (max:-1.0E-6, min:9.223372036854775E12)] 31.05.2016 12:05:06.214 *INFO* [qtp1118916813-38] org.apache.stanbol.enhancer.jobmanager.event.impl.EventJobManagerImpl Execution of Chain doidEnhancerChain finished after 14ms for ContentItem <urn:content-item-sha1-d2851c0b02e12cc3b42bb6608fa2e1d50c43b17f> 31.05.2016 12:05:06.215 *INFO* [qtp1118916813-38] org.apache.stanbol.enhancer.servicesapi.EnhancementJobManager > processed ContentItem <urn:content-item-sha1-d2851c0b02e12cc3b42bb6608fa2e1d50c43b17f> with Chain 'doidEnhancerChain' in 14ms | chain:[tika: 1ms (7%), langid: 3ms (21%), opennlp-sentence: 0ms (0%), opennlp-token: 0ms (0%), opennlp-pos: 1ms (7%), opennlp-ner: 1ms (7%), entityhubExtraction: 4ms (29%), doidEnhancer: 7ms (50%), dbpediaLinking: 0ms (0%)], concurrency: 1.0 (0%) ``` The Ansible playbook here performs all the steps I am been using to set up Stanbol: https://github.com/ecohealthalliance/t11/tree/master/ansible Thanks, -Nathan Breit -- Nathan Breit Software Developer EcoHealth Alliance 460 West 34th Street – 17th floor New York, NY 10001 My Skype: nathanathan3 <http://is.gd/OyRVnD> My Phone Number: 1-425-296-1123 www.ecohealthalliance.org EcoHealth Alliance leads cutting-edge research into the critical connections between human and wildlife health and delicate ecosystems. With this science we develop solutions that promote conservation and prevent pandemics.
