Hi SystemML community,
I’m trying to run the bivariate stats example script on Spark. I’m only doing a
toy example with very small data, but I have been running into errors.
My script invocation is as follows:
spark-submit --master local[4] SystemML.jar -f
scripts/algorithms/bivar-stats.dml -exec hybrid_spark -nvargs X=/data/iqtv.csv
index1=/data/index1.csv index2=/data/index2.csv types1=/data/types1.csv
types2=/data/types2.csv OUTDIR=/data/outdata
Am I calling the script incorrectly?
(All the files are on hdfs. Iqtv.csv is a headerless csv with two numeric
fields. The index1 and index2 files are text files containing only the strings
‘1’ and ‘2’ respectively. The types* files are text files each containing only
the string ‘1’.)
Please excuse the rather long stack trace below, but I’m hoping it will help
diagnose the problem.
Cheers,
Sandeep
================================================================================================================================
16/10/19 16:46:26 INFO api.DMLScript: BEGIN DML run 10/19/2016 16:46:26
ANTLR Tool version 4.3 used for code generation does not match the current
runtime version 4.5.3[…]
16/10/19 16:46:28 INFO spark.SparkContext: Running Spark version 2.0.0
[…]
16/10/19 16:46:29 INFO api.DMLScript: END DML run 10/19/2016 16:46:29
16/10/19 16:46:29 ERROR api.DMLScript: Failed to execute DML script.
org.apache.sysml.runtime.DMLRuntimeException:
org.apache.sysml.runtime.DMLRuntimeException:
org.apache.sysml.runtime.DMLRuntimeException: Unable to recompile program block
hierarchy.
at
org.apache.sysml.runtime.controlprogram.Program.execute(Program.java:152)
at org.apache.sysml.api.DMLScript.execute(DMLScript.java:677)
at org.apache.sysml.api.DMLScript.executeScript(DMLScript.java:337)
at org.apache.sysml.api.DMLScript.main(DMLScript.java:192)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at
org.apache.spark.deploy.SparkSubmit$.org$apache$spark$deploy$SparkSubmit$$runMain(SparkSubmit.scala:729)
at
org.apache.spark.deploy.SparkSubmit$.doRunMain$1(SparkSubmit.scala:185)
at org.apache.spark.deploy.SparkSubmit$.submit(SparkSubmit.scala:210)
at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:124)
at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala)
Caused by: org.apache.sysml.runtime.DMLRuntimeException:
org.apache.sysml.runtime.DMLRuntimeException: Unable to recompile program block
hierarchy.
at
org.apache.sysml.runtime.controlprogram.parfor.opt.OptimizationWrapper.optimize(OptimizationWrapper.java:299)
at
org.apache.sysml.runtime.controlprogram.parfor.opt.OptimizationWrapper.optimize(OptimizationWrapper.java:172)
at
org.apache.sysml.runtime.controlprogram.ParForProgramBlock.execute(ParForProgramBlock.java:550)
at
org.apache.sysml.runtime.controlprogram.Program.execute(Program.java:145)
... 12 more
Caused by: org.apache.sysml.runtime.DMLRuntimeException: Unable to recompile
program block hierarchy.
at
org.apache.sysml.hops.recompile.Recompiler.recompileProgramBlockHierarchy(Recompiler.java:541)
at
org.apache.sysml.runtime.controlprogram.parfor.opt.OptimizationWrapper.optimize(OptimizationWrapper.java:278)
... 15 more
Caused by: org.apache.sysml.hops.HopsException: ERROR: line 342, column 4 --
error constructing Lops for UnaryOp Hop --
at org.apache.sysml.hops.UnaryOp.constructLops(UnaryOp.java:177)
at org.apache.sysml.hops.DataOp.constructLops(DataOp.java:252)
at
org.apache.sysml.hops.recompile.Recompiler.recompileHopsDag(Recompiler.java:209)
at
org.apache.sysml.hops.recompile.Recompiler.rRecompileProgramBlock(Recompiler.java:881)
at
org.apache.sysml.hops.recompile.Recompiler.rRecompileProgramBlock(Recompiler.java:839)
at
org.apache.sysml.hops.recompile.Recompiler.rRecompileProgramBlock(Recompiler.java:839)
at
org.apache.sysml.hops.recompile.Recompiler.rRecompileProgramBlock(Recompiler.java:841)
at
org.apache.sysml.hops.recompile.Recompiler.rRecompileProgramBlock(Recompiler.java:858)
at
org.apache.sysml.hops.recompile.Recompiler.recompileProgramBlockHierarchy(Recompiler.java:536)
... 16 more
Caused by: org.apache.sysml.hops.HopsException: ERROR: line 0, column 0 --
error constructing Lops for UnaryOp Hop --
at org.apache.sysml.hops.UnaryOp.constructLops(UnaryOp.java:177)
at
org.apache.sysml.hops.BinaryOp.constructLopsBinaryDefault(BinaryOp.java:565)
at org.apache.sysml.hops.BinaryOp.constructLops(BinaryOp.java:166)
at
org.apache.sysml.hops.BinaryOp.constructLopsBinaryDefault(BinaryOp.java:566)
at org.apache.sysml.hops.BinaryOp.constructLops(BinaryOp.java:166)
at org.apache.sysml.hops.UnaryOp.constructLops(UnaryOp.java:142)
... 24 more
Caused by: java.lang.NullPointerException
at
org.apache.sysml.hops.ParameterizedBuiltinOp.constructLopsGroupedAggregate(ParameterizedBuiltinOp.java:247)
at
org.apache.sysml.hops.ParameterizedBuiltinOp.constructLops(ParameterizedBuiltinOp.java:181)
at
org.apache.sysml.hops.BinaryOp.constructLopsBinaryDefault(BinaryOp.java:590)
at org.apache.sysml.hops.BinaryOp.constructLops(BinaryOp.java:166)
at org.apache.sysml.hops.ReorgOp.constructLops(ReorgOp.java:128)
at
org.apache.sysml.hops.AggBinaryOp.constructSparkLopsCPMM(AggBinaryOp.java:832)
at org.apache.sysml.hops.AggBinaryOp.constructLops(AggBinaryOp.java:216)
at org.apache.sysml.hops.UnaryOp.constructLops(UnaryOp.java:142)
... 29 more
Exception in thread "main" org.apache.sysml.api.DMLException:
org.apache.sysml.runtime.DMLRuntimeException:
org.apache.sysml.runtime.DMLRuntimeException:
org.apache.sysml.runtime.DMLRuntimeException: Unable to recompile program block
hierarchy.
at org.apache.sysml.api.DMLScript.executeScript(DMLScript.java:351)
at org.apache.sysml.api.DMLScript.main(DMLScript.java:192)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at
org.apache.spark.deploy.SparkSubmit$.org$apache$spark$deploy$SparkSubmit$$runMain(SparkSubmit.scala:729)
at
org.apache.spark.deploy.SparkSubmit$.doRunMain$1(SparkSubmit.scala:185)
at org.apache.spark.deploy.SparkSubmit$.submit(SparkSubmit.scala:210)
at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:124)
at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala)
Caused by: org.apache.sysml.runtime.DMLRuntimeException:
org.apache.sysml.runtime.DMLRuntimeException:
org.apache.sysml.runtime.DMLRuntimeException: Unable to recompile program block
hierarchy.
at
org.apache.sysml.runtime.controlprogram.Program.execute(Program.java:152)
at org.apache.sysml.api.DMLScript.execute(DMLScript.java:677)
at org.apache.sysml.api.DMLScript.executeScript(DMLScript.java:337)
... 10 more
Caused by: org.apache.sysml.runtime.DMLRuntimeException:
org.apache.sysml.runtime.DMLRuntimeException: Unable to recompile program block
hierarchy.
at
org.apache.sysml.runtime.controlprogram.parfor.opt.OptimizationWrapper.optimize(OptimizationWrapper.java:299)
at
org.apache.sysml.runtime.controlprogram.parfor.opt.OptimizationWrapper.optimize(OptimizationWrapper.java:172)
at
org.apache.sysml.runtime.controlprogram.ParForProgramBlock.execute(ParForProgramBlock.java:550)
at
org.apache.sysml.runtime.controlprogram.Program.execute(Program.java:145)
... 12 more
Caused by: org.apache.sysml.runtime.DMLRuntimeException: Unable to recompile
program block hierarchy.
at
org.apache.sysml.hops.recompile.Recompiler.recompileProgramBlockHierarchy(Recompiler.java:541)
at
org.apache.sysml.runtime.controlprogram.parfor.opt.OptimizationWrapper.optimize(OptimizationWrapper.java:278)
... 15 more
Caused by: org.apache.sysml.hops.HopsException: ERROR: line 342, column 4 --
error constructing Lops for UnaryOp Hop --
at org.apache.sysml.hops.UnaryOp.constructLops(UnaryOp.java:177)
at org.apache.sysml.hops.DataOp.constructLops(DataOp.java:252)
at
org.apache.sysml.hops.recompile.Recompiler.recompileHopsDag(Recompiler.java:209)
at
org.apache.sysml.hops.recompile.Recompiler.rRecompileProgramBlock(Recompiler.java:881)
at
org.apache.sysml.hops.recompile.Recompiler.rRecompileProgramBlock(Recompiler.java:839)
at
org.apache.sysml.hops.recompile.Recompiler.rRecompileProgramBlock(Recompiler.java:839)
at
org.apache.sysml.hops.recompile.Recompiler.rRecompileProgramBlock(Recompiler.java:841)
at
org.apache.sysml.hops.recompile.Recompiler.rRecompileProgramBlock(Recompiler.java:858)
at
org.apache.sysml.hops.recompile.Recompiler.recompileProgramBlockHierarchy(Recompiler.java:536)
... 16 more
Caused by: org.apache.sysml.hops.HopsException: ERROR: line 0, column 0 --
error constructing Lops for UnaryOp Hop --
at org.apache.sysml.hops.UnaryOp.constructLops(UnaryOp.java:177)
at
org.apache.sysml.hops.BinaryOp.constructLopsBinaryDefault(BinaryOp.java:565)
at org.apache.sysml.hops.BinaryOp.constructLops(BinaryOp.java:166)
at
org.apache.sysml.hops.BinaryOp.constructLopsBinaryDefault(BinaryOp.java:566)
at org.apache.sysml.hops.BinaryOp.constructLops(BinaryOp.java:166)
at org.apache.sysml.hops.UnaryOp.constructLops(UnaryOp.java:142)
... 24 more
Caused by: java.lang.NullPointerException
at
org.apache.sysml.hops.ParameterizedBuiltinOp.constructLopsGroupedAggregate(ParameterizedBuiltinOp.java:247)
at
org.apache.sysml.hops.ParameterizedBuiltinOp.constructLops(ParameterizedBuiltinOp.java:181)
at
org.apache.sysml.hops.BinaryOp.constructLopsBinaryDefault(BinaryOp.java:590)
at org.apache.sysml.hops.BinaryOp.constructLops(BinaryOp.java:166)
at org.apache.sysml.hops.ReorgOp.constructLops(ReorgOp.java:128)
at
org.apache.sysml.hops.AggBinaryOp.constructSparkLopsCPMM(AggBinaryOp.java:832)
at org.apache.sysml.hops.AggBinaryOp.constructLops(AggBinaryOp.java:216)
at org.apache.sysml.hops.UnaryOp.constructLops(UnaryOp.java:142)
... 29 more
16/10/19 16:46:29 INFO util.ShutdownHookManager: Shutdown hook called
[…]
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