Re: Build failed in Jenkins: SystemML-DailyTest #761

Mon, 23 Jan 2017 10:51:12 -0800

as commented on the JIRA, this is not an issue of specific inputs, i.e., I was not able to reproduce it locally with the seeds Glenn captured. So the next step would be to investigate side effects between concurrent tests, but this is a bit tricky. 

Regards,
Matthias

On 1/23/2017 7:11 PM, Mike Dusenberry wrote:

Note that the FullReblockTest failed again this morning.

On Sat, Jan 21, 2017 at 11:34 AM Glenn Weidner <gweid...@us.ibm.com> wrote:


The FullReblock test last failed on January 2. I had saved those logs and
today uploaded the information to:

https://issues.apache.org/jira/browse/SYSTEMML-1110

Here's the seed reported for the
org.apache.sysml.test.integration.functions.data.FullReblockTest.testCSVSingeMSparseMR
failure:

17/01/02 14:38:32 ERROR data.FullReblockTest: FullReblockTest failed with
seed=4742759188694491, seed2=4742759188694830

In regards to the functions.indexing.RightIndexingMatrixTest, I also saved
the logs for both failed builds 760 and 761. That information has been
uploaded to new JIRA:

https://issues.apache.org/jira/browse/SYSTEMML-1189

For easier reference, I grouped these JIRAs including similar resolved bug
https://issues.apache.org/jira/browse/SYSTEMML-541 under:

https://issues.apache.org/jira/browse/SYSTEMML-1188

Thanks,
Glenn

[image: Inactive hide details for Matthias Boehm ---01/21/2017 02:21:04
AM---Let's keep the test, collect the used seeds, and fix it. T]Matthias
Boehm ---01/21/2017 02:21:04 AM---Let's keep the test, collect the used
seeds, and fix it. The issue is due to a randomly generated s

From: Matthias Boehm <mboe...@googlemail.com>
To: dev@systemml.incubator.apache.org
Date: 01/21/2017 02:21 AM
Subject: Re: Build failed in Jenkins: SystemML-DailyTest #761
------------------------------




Let's keep the test, collect the used seeds, and fix it. The issue is
due to a randomly generated seed which hints at an underlying problem
for certain special cases. Btw, FullReblockTest has a similar issue.

Since I don't have access to the sparktc jenkins infrastructure, it
would be great if someone with access could simply share the seeds and
I'll have a look.

Regards,
Matthias

On 1/21/2017 1:58 AM, Deron Eriksson wrote:

+1. It would be great to have this randomly failing test fixed as it

leads

to a lot of unnecessary Jenkins 'build failed' messages. Could we please
fix or remove it?

Deron


On Fri, Jan 20, 2017 at 4:54 PM, <dusenberr...@gmail.com> wrote:


This right indexing test has been failing randomly for a while now.

Does

anyone have any thoughts on what the problem is and how to fix it?

--

Mike Dusenberry
GitHub: github.com/dusenberrymw
LinkedIn: linkedin.com/in/mikedusenberry

Sent from my iPhone.



On Jan 20, 2017, at 3:30 PM, jenk...@spark.tc wrote:

See <https://sparktc.ibmcloud.com/jenkins/job/SystemML-

DailyTest/761/changes>


Changes:

[mwdusenb] [SYSTEMML-1185] SystemML Breast Cancer Project

[mwdusenb] [MINOR] Update RAT Checks to Exclude `.keep` files.

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SparkContext

Running org.apache.sysml.test.integration.mlcontext.MLContextTest
Tests run: 161, Failures: 0, Errors: 0, Skipped: 0, Time elapsed:

56.358

sec - in org.apache.sysml.test.integration.mlcontext.MLContextTest

17/01/20 15:52:56 INFO util.ShutdownHookManager: Shutdown hook called
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Running org.apache.sysml.test.integration.applications.dml.ArimaDMLTest
Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 195.712

sec - in org.apache.sysml.test.integration.applications.dml.ArimaDMLTest

Running org.apache.sysml.test.integration.functions.append.

AppendVectorTest

Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 377.892

sec - in org.apache.sysml.test.integration.functions.append.
AppendVectorTest

Running org.apache.sysml.test.integration.functions.

quaternary.WeightedSigmoidTest

Tests run: 56, Failures: 0, Errors: 0, Skipped: 0, Time elapsed:

985.809

sec - in org.apache.sysml.test.integration.functions.
quaternary.WeightedSigmoidTest

17/01/20 15:54:24 INFO util.ShutdownHookManager: Shutdown hook called
17/01/20 15:54:24 INFO util.ShutdownHookManager: Deleting directory

/tmp/spark-865c2a67-fd15-4eae-b1f8-69cbc2cbf8d5

Running org.apache.sysml.test.integration.functions.

indexing.LeftIndexingTest

Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 652.628

sec - in org.apache.sysml.test.integration.functions.
indexing.LeftIndexingTest

Running org.apache.sysml.test.integration.applications.

parfor.ParForCorrelationTest

Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed:

260.959

sec - in org.apache.sysml.test.integration.applications.
parfor.ParForCorrelationTest

Running

org.apache.sysml.test.integration.applications.descriptivestats.

UnivariateUnweightedScaleDenseTest

Tests run: 24, Failures: 0, Errors: 0, Skipped: 0, Time elapsed:

324.842

sec - in

org.apache.sysml.test.integration.applications.descriptivestats.

UnivariateUnweightedScaleDenseTest

Running org.apache.sysml.test.integration.applications.parfor.

ParForCorrelationTestLarge

Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 51.526

sec - in org.apache.sysml.test.integration.applications.parfor.
ParForCorrelationTestLarge

Running org.apache.sysml.test.integration.functions.reorg.FullOrderTest
Tests run: 132, Failures: 0, Errors: 0, Skipped: 0, Time elapsed:

1,362.813 sec - in org.apache.sysml.test.integration.functions.reorg.
FullOrderTest

Running org.apache.sysml.test.integration.functions.quaternary.

WeightedDivMatrixMultTest

Tests run: 90, Failures: 0, Errors: 0, Skipped: 0, Time elapsed:

1,476.652 sec - in

org.apache.sysml.test.integration.functions.quaternary.

WeightedDivMatrixMultTest

17/01/20 16:01:59 INFO util.ShutdownHookManager: Shutdown hook called
17/01/20 16:01:59 INFO util.ShutdownHookManager: Deleting directory

/tmp/spark-0da69e49-ab06-4b24-b6e7-e6eb21e07600

Running

org.apache.sysml.test.integration.applications.descriptivestats.

UnivariateWeightedScaleDenseTest

Tests run: 24, Failures: 0, Errors: 0, Skipped: 0, Time elapsed:

342.355

sec - in

org.apache.sysml.test.integration.applications.descriptivestats.

UnivariateWeightedScaleDenseTest

Running org.apache.sysml.test.integration.functions.append.

AppendChainTest

Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed:

1,075.082 sec - in org.apache.sysml.test.integration.functions.append.
AppendChainTest

Running org.apache.sysml.test.integration.applications.

parfor.ParForNaiveBayesTest

Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 521.13

sec - in org.apache.sysml.test.integration.applications.
parfor.ParForNaiveBayesTest

Running

org.apache.sysml.test.integration.applications.descriptivestats.

UnivariateUnweightedScaleSparseTest

Tests run: 24, Failures: 0, Errors: 0, Skipped: 0, Time elapsed:

280.814

sec - in

org.apache.sysml.test.integration.applications.descriptivestats.

UnivariateUnweightedScaleSparseTest

Running org.apache.sysml.test.integration.functions.append.

AppendMatrixTest

Tests run: 22, Failures: 0, Errors: 0, Skipped: 0, Time elapsed:

1,497.48 sec - in org.apache.sysml.test.integration.functions.append.
AppendMatrixTest

Running

org.apache.sysml.test.integration.applications.descriptivestats.

UnivariateWeightedScaleSparseTest

Tests run: 24, Failures: 0, Errors: 0, Skipped: 0, Time elapsed:

350.107

sec - in

org.apache.sysml.test.integration.applications.descriptivestats.

UnivariateWeightedScaleSparseTest

Running org.apache.sysml.test.integration.applications.dml.HITSDMLTest
Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 156.481

sec - in org.apache.sysml.test.integration.applications.dml.HITSDMLTest

Running org.apache.sysml.test.integration.applications.

pydml.ArimaPyDMLTest

Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 50.5

sec

- in org.apache.sysml.test.integration.applications.pydml.ArimaPyDMLTest

Running org.apache.sysml.test.integration.applications.

pydml.HITSPyDMLTest

Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 78.545

sec - in org.apache.sysml.test.integration.applications.
pydml.HITSPyDMLTest

Running org.apache.sysml.test.integration.applications.dml.

LinearRegressionDMLTest

Tests run: 14, Failures: 0, Errors: 0, Skipped: 0, Time elapsed:

102.099

sec - in org.apache.sysml.test.integration.applications.dml.
LinearRegressionDMLTest

Running org.apache.sysml.test.integration.applications.

pydml.CsplineDSPyDMLTest

Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 6.965

sec - in org.apache.sysml.test.integration.applications.
pydml.CsplineDSPyDMLTest

Running org.apache.sysml.test.integration.applications.

pydml.LinearLogRegPyDMLTest

Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 86.725

sec - in org.apache.sysml.test.integration.applications.
pydml.LinearLogRegPyDMLTest

Running org.apache.sysml.test.integration.applications.

pydml.NaiveBayesPyDMLTest

Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 81.071

sec - in org.apache.sysml.test.integration.applications.
pydml.NaiveBayesPyDMLTest

Running org.apache.sysml.test.integration.applications.dml.

CsplineCGDMLTest

Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 27.608

sec - in org.apache.sysml.test.integration.applications.dml.
CsplineCGDMLTest

Running org.apache.sysml.test.integration.applications.dml.L2SVMDMLTest
Tests run: 18, Failures: 0, Errors: 0, Skipped: 0, Time elapsed:

128.329

sec - in org.apache.sysml.test.integration.applications.dml.L2SVMDMLTest

Running org.apache.sysml.test.integration.applications.pydml.

MDABivariateStatsPyDMLTest

Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 294.376

sec - in org.apache.sysml.test.integration.applications.pydml.
MDABivariateStatsPyDMLTest

Running org.apache.sysml.test.integration.applications.

pydml.PageRankPyDMLTest

Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 6.306

sec - in org.apache.sysml.test.integration.applications.
pydml.PageRankPyDMLTest

Running org.apache.sysml.test.integration.applications.pydml.

NaiveBayesParforPyDMLTest

Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 81.436

sec - in org.apache.sysml.test.integration.applications.pydml.
NaiveBayesParforPyDMLTest

Running org.apache.sysml.test.integration.applications.dml.

NaiveBayesDMLTest

Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed:

163.066

sec - in org.apache.sysml.test.integration.applications.dml.
NaiveBayesDMLTest

Running org.apache.sysml.test.integration.applications.dml.

MDABivariateStatsDMLTest

Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 612.506

sec - in org.apache.sysml.test.integration.applications.dml.
MDABivariateStatsDMLTest

Running org.apache.sysml.test.integration.applications.dml.

PageRankDMLTest

Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 12.145

sec - in org.apache.sysml.test.integration.applications.dml.
PageRankDMLTest

Running org.apache.sysml.test.integration.applications.

pydml.GLMPyDMLTest

Tests run: 30, Failures: 0, Errors: 0, Skipped: 0, Time elapsed:

589.644

sec - in

org.apache.sysml.test.integration.applications.pydml.GLMPyDMLTest

Running org.apache.sysml.test.integration.applications.

pydml.MultiClassSVMPyDMLTest

Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 87.987

sec - in org.apache.sysml.test.integration.applications.
pydml.MultiClassSVMPyDMLTest

Running org.apache.sysml.test.integration.applications.dml.ID3DMLTest
Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 655.197

sec - in org.apache.sysml.test.integration.applications.dml.ID3DMLTest

Running org.apache.sysml.test.integration.applications.dml.GLMDMLTest
Tests run: 60, Failures: 0, Errors: 0, Skipped: 0, Time elapsed:

1,432.522 sec - in org.apache.sysml.test.integration.applications.dml.
GLMDMLTest

Running org.apache.sysml.test.integration.applications.

pydml.CsplineCGPyDMLTest

Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 6.283

sec - in org.apache.sysml.test.integration.applications.
pydml.CsplineCGPyDMLTest

Running org.apache.sysml.test.integration.applications.

pydml.WelchTPyDMLTest

Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 6.687

sec - in org.apache.sysml.test.integration.applications.
pydml.WelchTPyDMLTest

Running org.apache.sysml.test.integration.applications.dml.

MultiClassSVMDMLTest

Tests run: 18, Failures: 0, Errors: 0, Skipped: 0, Time elapsed:

178.477

sec - in org.apache.sysml.test.integration.applications.dml.
MultiClassSVMDMLTest

Running org.apache.sysml.test.integration.applications.dml.

CsplineDSDMLTest

Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 30.703

sec - in org.apache.sysml.test.integration.applications.dml.
CsplineDSDMLTest

Running org.apache.sysml.test.integration.applications.

pydml.ApplyTransformPyDMLTest

Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.425

sec - in org.apache.sysml.test.integration.applications.
pydml.ApplyTransformPyDMLTest

Running org.apache.sysml.test.integration.applications.dml.

NaiveBayesParforDMLTest

Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed:

162.851

sec - in org.apache.sysml.test.integration.applications.dml.
NaiveBayesParforDMLTest

Running org.apache.sysml.test.integration.applications.

pydml.L2SVMPyDMLTest

Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 64.377

sec - in org.apache.sysml.test.integration.applications.
pydml.L2SVMPyDMLTest

Running org.apache.sysml.test.integration.applications.pydml.

LinearRegressionPyDMLTest

Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 51.406

sec - in org.apache.sysml.test.integration.applications.pydml.
LinearRegressionPyDMLTest

Running org.apache.sysml.test.integration.applications.dml.

LinearLogRegDMLTest

Tests run: 14, Failures: 0, Errors: 0, Skipped: 0, Time elapsed:

122.197

sec - in org.apache.sysml.test.integration.applications.dml.
LinearLogRegDMLTest

Running org.apache.sysml.test.integration.applications.dml.GNMFDMLTest
Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 116.917

sec - in org.apache.sysml.test.integration.applications.dml.GNMFDMLTest

Running

org.apache.sysml.test.integration.applications.dml.WelchTDMLTest

Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 13.283

sec - in

org.apache.sysml.test.integration.applications.dml.WelchTDMLTest

Running org.apache.sysml.test.integration.applications.dml.

ApplyTransformDMLTest

Tests run: 14, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 16.348

sec - in org.apache.sysml.test.integration.applications.dml.
ApplyTransformDMLTest

Running org.apache.sysml.test.integration.applications.

pydml.ID3PyDMLTest

Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 332.154

sec - in

org.apache.sysml.test.integration.applications.pydml.ID3PyDMLTest

Running org.apache.sysml.test.integration.applications.

pydml.GNMFPyDMLTest

Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 56.585

sec - in org.apache.sysml.test.integration.applications.
pydml.GNMFPyDMLTest


Results :

Failed tests:
 RightIndexingMatrixTest>AutomatedTestBase.tearDown:1472 Detailed

matrices characteristics:

!  B-DML<->B-R # stored values in B-R: 3
!  B-DML<->B-R # stored values in B-DML: 3
!  B-DML<->B-R identical values(z=0): 0
!  B-DML<->B-R wrong values(z=1.0E-10): 3
!  B-DML<->B-R min error: 38.93887198928196
!  B-DML<->B-R max error: 95.54525202237663
   C-DML<->C-R # stored values in C-R: 545360
   C-DML<->C-R # stored values in C-DML: 545360
   C-DML<->C-R identical values(z=0): 545315
   C-DML<->C-R wrong values(z=1.0E-10): 0
   C-DML<->C-R min error: 0.0
   C-DML<->C-R max error: 1.4210854715202004E-14
   D-DML<->D-R # stored values in D-R: 6772
   D-DML<->D-R # stored values in D-DML: 6772
   D-DML<->D-R identical values(z=0): 6770
   D-DML<->D-R wrong values(z=1.0E-10): 0
   D-DML<->D-R min error: 0.0
   D-DML<->D-R max error: 7.105427357601002E-15


Tests run: 6541, Failures: 1, Errors: 0, Skipped: 0

[INFO]
[INFO] --- maven-failsafe-plugin:2.17:verify (default) @ systemml ---
[INFO] Failsafe report directory: <https://sparktc.ibmcloud.com/

jenkins/job/SystemML-DailyTest/ws/target/failsafe-reports>

[INFO] ------------------------------------------------------------

------------

[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------

------------

[INFO] Total time: 02:54 h
[INFO] Finished at: 2017-01-20T17:30:11-06:00
[INFO] Final Memory: 65M/2291M
[INFO] ------------------------------------------------------------

------------

[ERROR] Failed to execute goal org.apache.maven.plugins:

maven-failsafe-plugin:2.17:verify (default) on project systemml: There
are test failures.

[ERROR]
[ERROR] Please refer to <https://sparktc.ibmcloud.com/

jenkins/job/SystemML-DailyTest/ws/target/failsafe-reports> for the
individual test results.

[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with

the

-e switch.

[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions,

please read the following articles:

[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/

MojoFailureException

Build step 'Execute shell' marked build as failure
Run condition [Always] enabling perform for step [[]]











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Mike Dusenberry
GitHub: github.com/dusenberrymw
LinkedIn: linkedin.com/in/mikedusenberry

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