Stian Soiland-Reyes created TAVERNA-1016:
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Summary: Use/expose Commons RDF API instead of Jena/Sesame
Key: TAVERNA-1016
URL: https://issues.apache.org/jira/browse/TAVERNA-1016
Project: Apache Taverna
Issue Type: Task
Components: Taverna Engine, Taverna Language, Taverna Plugin Component
Reporter: Stian Soiland-Reyes
Assignee: Stian Soiland-Reyes
Currently we use and expose a combination of Sesame 2 and Jena 3:
{code}
stain@biggiebuntu:~/src/taverna$ grep -i sesame */*/pom.xml
incubator-taverna-language/taverna-scufl2-wfbundle/pom.xml:
<groupId>org.openrdf.sesame</groupId>
incubator-taverna-language/taverna-scufl2-wfbundle/pom.xml:
<artifactId>sesame-repository-sail</artifactId>
incubator-taverna-language/taverna-scufl2-wfbundle/pom.xml:
<version>${sesame.version}</version>
incubator-taverna-language/taverna-scufl2-wfbundle/pom.xml:
<groupId>org.openrdf.sesame</groupId>
incubator-taverna-language/taverna-scufl2-wfbundle/pom.xml:
<artifactId>sesame-sail-memory</artifactId>
incubator-taverna-language/taverna-scufl2-wfbundle/pom.xml:
<version>${sesame.version}</version>
stain@biggiebuntu:~/src/taverna$ grep -i jena */*/pom.xml
incubator-taverna-commandline/taverna-commandline-product/pom.xml: <!-- Jena
bundle needed by jsonld-java-jena -->
incubator-taverna-commandline/taverna-commandline-product/pom.xml:
<groupId>org.apache.jena</groupId>
incubator-taverna-commandline/taverna-commandline-product/pom.xml:
<artifactId>jena-osgi</artifactId>
incubator-taverna-commandline/taverna-commandline-product/pom.xml:
<version>${jena.version}</version>
incubator-taverna-commandline/taverna-commandline-product/pom.xml: <!--
Newer jsonld-java than jena-osgi requires (JENA-1176) -->
incubator-taverna-commandline/taverna-commandline-product/pom.xml:Xerces OSGi
bundle needed by jena-osgi
incubator-taverna-commandline/taverna-commandline-product/pom.xml:<!-- Also
needed by Jena -->
incubator-taverna-engine/taverna-prov-owl-bindings/pom.xml:
<groupId>org.apache.jena</groupId>
incubator-taverna-engine/taverna-prov-owl-bindings/pom.xml:
<artifactId>jena-osgi</artifactId>
incubator-taverna-engine/taverna-prov-owl-bindings/pom.xml:
<version>${jena.version}</version>
incubator-taverna-engine/taverna-prov-owl-bindings/pom.xml:
<description>OWL bindings using Jena</description>
incubator-taverna-language/taverna-databundle/pom.xml:
<groupId>org.apache.jena</groupId>
incubator-taverna-language/taverna-databundle/pom.xml:
<artifactId>jena-osgi</artifactId>
incubator-taverna-language/taverna-databundle/pom.xml:
<version>${jena.version}</version>
incubator-taverna-language/taverna-robundle/pom.xml:
<groupId>org.apache.jena</groupId>
incubator-taverna-language/taverna-robundle/pom.xml:
<artifactId>jena-osgi</artifactId>
incubator-taverna-language/taverna-robundle/pom.xml:
<version>${jena.version}</version>
incubator-taverna-language/taverna-scufl2-annotation/pom.xml:
<groupId>org.apache.jena</groupId>
incubator-taverna-language/taverna-scufl2-annotation/pom.xml:
<artifactId>jena-osgi</artifactId>
incubator-taverna-language/taverna-scufl2-annotation/pom.xml:
<version>${jena.version}</version>
incubator-taverna-language/taverna-scufl2-examples/pom.xml:
<groupId>org.apache.jena</groupId>
incubator-taverna-language/taverna-scufl2-examples/pom.xml:
<artifactId>jena-arq</artifactId>
incubator-taverna-language/taverna-scufl2-examples/pom.xml:
<version>${jena.version}</version>
incubator-taverna-language/taverna-scufl2-wfdesc/pom.xml:
<groupId>org.apache.jena</groupId>
incubator-taverna-language/taverna-scufl2-wfdesc/pom.xml:
<artifactId>jena-maven-tools</artifactId>
incubator-taverna-language/taverna-scufl2-wfdesc/pom.xml:
<version>${jena.version}</version>
incubator-taverna-language/taverna-scufl2-wfdesc/pom.xml:
<output>${project.build.directory}/generated-sources/jena</output>
incubator-taverna-language/taverna-scufl2-wfdesc/pom.xml:
<source>${project.build.directory}/generated-sources/jena</source>
incubator-taverna-language/taverna-scufl2-wfdesc/pom.xml:
<groupId>org.apache.jena</groupId>
incubator-taverna-language/taverna-scufl2-wfdesc/pom.xml:
<artifactId>jena-maven-tools</artifactId>
incubator-taverna-language/taverna-scufl2-wfdesc/pom.xml:
<versionRange>[${jena.version},)</versionRange>
incubator-taverna-language/taverna-scufl2-wfdesc/pom.xml:
<!-- Make
target/generated-source/jena -->
incubator-taverna-language/taverna-scufl2-wfdesc/pom.xml:
<groupId>org.apache.jena</groupId>
incubator-taverna-language/taverna-scufl2-wfdesc/pom.xml:
<artifactId>jena-osgi</artifactId>
incubator-taverna-language/taverna-scufl2-wfdesc/pom.xml:
<version>${jena.version}</version>
incubator-taverna-plugin-component/taverna-component-activity/pom.xml:
<groupId>org.apache.jena</groupId>
incubator-taverna-plugin-component/taverna-component-activity/pom.xml:
<artifactId>jena-osgi</artifactId>
incubator-taverna-plugin-component/taverna-component-activity/pom.xml:
<version>${jena.version}</version>
incubator-taverna-plugin-component/taverna-component-repository-api/pom.xml:
<groupId>org.apache.jena</groupId>
incubator-taverna-plugin-component/taverna-component-repository-api/pom.xml:
<artifactId>jena-osgi</artifactId>
incubator-taverna-plugin-component/taverna-component-repository-api/pom.xml:
<version>${jena.version}</version>
{code}
Some of those are exposed in the API - e.g. in
https://taverna.incubator.apache.org/javadoc/taverna-language/org/apache/taverna/scufl2/annotation/AnnotationTools.html
[Commons RDF|http://commonsrdf.apache.org/] is evolving as a light-weight API
with bindings for both RDF4J (newer Sesame) and Jena - but with interfaces that
don't expose those.
So it would be a good idea if we could move towards using Commons RDF and from
our API only expose RDF interfaces from [Commons RDF
API|http://commonsrdf.apache.org/apidocs/index.html?org/apache/commons/rdf/api/package-summary.html]
-- then we are free to swap/update implementations.
Some of this uses with JSONLD in RO Bundle can use the JSONLD-Java binding for
Commons RDF directly, and therefore reduce the number of dependencies of
taverna-robundle.
Full disclosure: I'm one of the committers of Commons RDF :-) Version 0.3.0
adds the RDF4J/Jena implementations, currently [under
vote|https://lists.apache.org/thread.html/5c6ce4d52e3f6ca69236bfba4176b49f8388d8caa118ac10b7464bec@%3Cdev.commonsrdf.apache.org%3E].
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