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https://issues.apache.org/jira/browse/TAVERNA-1017?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
]
Stian Soiland-Reyes updated TAVERNA-1017:
-----------------------------------------
Labels: annotations rdf (was: )
> Use/expose Commons RDF API instead of Jena/Sesame
> -------------------------------------------------
>
> Key: TAVERNA-1017
> URL: https://issues.apache.org/jira/browse/TAVERNA-1017
> Project: Apache Taverna
> Issue Type: Task
> Components: Taverna Engine, Taverna Language, Taverna Plugin
> Component
> Reporter: Stian Soiland-Reyes
> Assignee: Stian Soiland-Reyes
> Labels: annotations, rdf
>
> Currently we use and expose a combination of Sesame 2 and Jena 3:
> {code}
> stain@biggiebuntu:~/src/taverna$ grep -i sesame */*/pom.xml
> incubator-taverna-language/taverna-scufl2-wfbundle/pom.xml:
> <groupId>org.openrdf.sesame</groupId>
> incubator-taverna-language/taverna-scufl2-wfbundle/pom.xml:
> <artifactId>sesame-repository-sail</artifactId>
> incubator-taverna-language/taverna-scufl2-wfbundle/pom.xml:
> <version>${sesame.version}</version>
> incubator-taverna-language/taverna-scufl2-wfbundle/pom.xml:
> <groupId>org.openrdf.sesame</groupId>
> incubator-taverna-language/taverna-scufl2-wfbundle/pom.xml:
> <artifactId>sesame-sail-memory</artifactId>
> incubator-taverna-language/taverna-scufl2-wfbundle/pom.xml:
> <version>${sesame.version}</version>
> stain@biggiebuntu:~/src/taverna$ grep -i jena */*/pom.xml
> incubator-taverna-commandline/taverna-commandline-product/pom.xml: <!--
> Jena bundle needed by jsonld-java-jena -->
> incubator-taverna-commandline/taverna-commandline-product/pom.xml:
> <groupId>org.apache.jena</groupId>
> incubator-taverna-commandline/taverna-commandline-product/pom.xml:
> <artifactId>jena-osgi</artifactId>
> incubator-taverna-commandline/taverna-commandline-product/pom.xml:
> <version>${jena.version}</version>
> incubator-taverna-commandline/taverna-commandline-product/pom.xml: <!--
> Newer jsonld-java than jena-osgi requires (JENA-1176) -->
> incubator-taverna-commandline/taverna-commandline-product/pom.xml:Xerces OSGi
> bundle needed by jena-osgi
> incubator-taverna-commandline/taverna-commandline-product/pom.xml:<!-- Also
> needed by Jena -->
> incubator-taverna-engine/taverna-prov-owl-bindings/pom.xml:
> <groupId>org.apache.jena</groupId>
> incubator-taverna-engine/taverna-prov-owl-bindings/pom.xml:
> <artifactId>jena-osgi</artifactId>
> incubator-taverna-engine/taverna-prov-owl-bindings/pom.xml:
> <version>${jena.version}</version>
> incubator-taverna-engine/taverna-prov-owl-bindings/pom.xml:
> <description>OWL bindings using Jena</description>
> incubator-taverna-language/taverna-databundle/pom.xml:
> <groupId>org.apache.jena</groupId>
> incubator-taverna-language/taverna-databundle/pom.xml:
> <artifactId>jena-osgi</artifactId>
> incubator-taverna-language/taverna-databundle/pom.xml:
> <version>${jena.version}</version>
> incubator-taverna-language/taverna-robundle/pom.xml:
> <groupId>org.apache.jena</groupId>
> incubator-taverna-language/taverna-robundle/pom.xml:
> <artifactId>jena-osgi</artifactId>
> incubator-taverna-language/taverna-robundle/pom.xml:
> <version>${jena.version}</version>
> incubator-taverna-language/taverna-scufl2-annotation/pom.xml:
> <groupId>org.apache.jena</groupId>
> incubator-taverna-language/taverna-scufl2-annotation/pom.xml:
> <artifactId>jena-osgi</artifactId>
> incubator-taverna-language/taverna-scufl2-annotation/pom.xml:
> <version>${jena.version}</version>
> incubator-taverna-language/taverna-scufl2-examples/pom.xml:
> <groupId>org.apache.jena</groupId>
> incubator-taverna-language/taverna-scufl2-examples/pom.xml:
> <artifactId>jena-arq</artifactId>
> incubator-taverna-language/taverna-scufl2-examples/pom.xml:
> <version>${jena.version}</version>
> incubator-taverna-language/taverna-scufl2-wfdesc/pom.xml:
> <groupId>org.apache.jena</groupId>
> incubator-taverna-language/taverna-scufl2-wfdesc/pom.xml:
> <artifactId>jena-maven-tools</artifactId>
> incubator-taverna-language/taverna-scufl2-wfdesc/pom.xml:
> <version>${jena.version}</version>
> incubator-taverna-language/taverna-scufl2-wfdesc/pom.xml:
>
> <output>${project.build.directory}/generated-sources/jena</output>
> incubator-taverna-language/taverna-scufl2-wfdesc/pom.xml:
>
> <source>${project.build.directory}/generated-sources/jena</source>
> incubator-taverna-language/taverna-scufl2-wfdesc/pom.xml:
>
> <groupId>org.apache.jena</groupId>
> incubator-taverna-language/taverna-scufl2-wfdesc/pom.xml:
>
> <artifactId>jena-maven-tools</artifactId>
> incubator-taverna-language/taverna-scufl2-wfdesc/pom.xml:
>
> <versionRange>[${jena.version},)</versionRange>
> incubator-taverna-language/taverna-scufl2-wfdesc/pom.xml:
> <!-- Make
> target/generated-source/jena -->
> incubator-taverna-language/taverna-scufl2-wfdesc/pom.xml:
> <groupId>org.apache.jena</groupId>
> incubator-taverna-language/taverna-scufl2-wfdesc/pom.xml:
> <artifactId>jena-osgi</artifactId>
> incubator-taverna-language/taverna-scufl2-wfdesc/pom.xml:
> <version>${jena.version}</version>
> incubator-taverna-plugin-component/taverna-component-activity/pom.xml:
> <groupId>org.apache.jena</groupId>
> incubator-taverna-plugin-component/taverna-component-activity/pom.xml:
> <artifactId>jena-osgi</artifactId>
> incubator-taverna-plugin-component/taverna-component-activity/pom.xml:
> <version>${jena.version}</version>
> incubator-taverna-plugin-component/taverna-component-repository-api/pom.xml:
> <groupId>org.apache.jena</groupId>
> incubator-taverna-plugin-component/taverna-component-repository-api/pom.xml:
> <artifactId>jena-osgi</artifactId>
> incubator-taverna-plugin-component/taverna-component-repository-api/pom.xml:
> <version>${jena.version}</version>
> {code}
> Some of those are exposed in the API - e.g. in
> https://taverna.incubator.apache.org/javadoc/taverna-language/org/apache/taverna/scufl2/annotation/AnnotationTools.html
> [Commons RDF|http://commonsrdf.apache.org/] is evolving as a light-weight API
> with bindings for both RDF4J (newer Sesame) and Jena - but with interfaces
> that don't expose those.
> So it would be a good idea if we could move towards using Commons RDF and
> from our API only expose RDF interfaces from [Commons RDF
> API|http://commonsrdf.apache.org/apidocs/index.html?org/apache/commons/rdf/api/package-summary.html]
> -- then we are free to swap/update implementations.
> Some of this uses with JSONLD in RO Bundle can use the JSONLD-Java binding
> for Commons RDF directly, and therefore reduce the number of dependencies of
> taverna-robundle.
> Full disclosure: I'm one of the committers of Commons RDF :-) Version 0.3.0
> adds the RDF4J/Jena implementations, currently [under
> vote|https://lists.apache.org/thread.html/5c6ce4d52e3f6ca69236bfba4176b49f8388d8caa118ac10b7464bec@%3Cdev.commonsrdf.apache.org%3E].
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