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https://issues.apache.org/jira/browse/TIKA-1461?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=14188779#comment-14188779
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Cservenak, Tamas commented on TIKA-1461:
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Nick, tika-app is known to be OK with detecting this file (see Nexus issue 
comments). But, we use tika-core only, that unlike tika-app, has limited set of 
detectors, and AFAIK relies on tika-mimetypes.xml solely (plus we use 
custom-mimetypes.xml too). Tike-Core alone does produce this problem.

Please see comments on original Nexus issue
https://issues.sonatype.org/browse/NEXUS-7603

> Bad mime detection of certain JAR file
> --------------------------------------
>
>                 Key: TIKA-1461
>                 URL: https://issues.apache.org/jira/browse/TIKA-1461
>             Project: Tika
>          Issue Type: Bug
>          Components: core
>    Affects Versions: 1.6
>            Reporter: Cservenak, Tamas
>
> Given this "ordinary" Java JAR file
> https://maven.atlassian.com/content/groups/public/com/atlassian/support/healthcheck/support-healthcheck-plugin/1.0.3/support-healthcheck-plugin-1.0.3.jar
> Manually inspected and tested it, it is a Jar file and is valid one.
> Still, Tika Core's Detector detects it as type {{application/x-msdownload; 
> format=pe}}. Tthe detection is "hinted" with file name, hence "jar" hint is 
> present, still it's not detected as desired {{application/java-archive}}.
> IMO, this happens due to the problem with priority of 
> {{application/x-msdownload; format=pe}}, which is 55. If it would be 50, the 
> "mediation" would kick in, see TIKA-1292. 
> Changing/overriding magic priority is not possible using 
> {{custom-mimetypes.xml}} is also not possible.
> Unsure what the correct solution is here, nor how to circumvent this without 
> patching Tika.
> The problem affects versions 1.5 but also 1.6, but we target 1.6.



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