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https://issues.apache.org/jira/browse/UIMA-4480?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=14638811#comment-14638811
]
Peter Klügl commented on UIMA-4480:
-----------------------------------
The best way is probably to use the maven plugins.
First, generate the type system xml with the ruta-maven-plugin:
https://uima.apache.org/d/ruta-current/tools.ruta.book.html#d5e3271
Then, generate the JCas classes using the jcasgen-maven-plugin:
https://uima.apache.org/d/uimaj-2.8.0/tools.html#ugr.tools.jcasgen.maven_plugin
Note that the maven phases need to be correct, e.g., the second plugin needs to
be executed after the first one.
> Cannot declar new type in Java code to apply Ruta rules
> -------------------------------------------------------
>
> Key: UIMA-4480
> URL: https://issues.apache.org/jira/browse/UIMA-4480
> Project: UIMA
> Issue Type: Bug
> Components: ruta
> Affects Versions: 2.2.1ruta
> Reporter: Min Jiang
> Assignee: Peter Klügl
> Fix For: 2.3.1ruta
>
>
> I used Java code to apply UIMA Ruta rules, but with declare statement, ruta
> cannot recognize the new created annotation type.
> Here is the code I used:
> String rutaStr2 = "DECLARE person; W{REGEXP(\"Patient\") -> MARK(person)};";
> Ruta.apply( aJCas.getCas(), rutaStr2 );
> The error is like:
> Jun 24, 2015 3:01:07 PM
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl
> callAnalysisComponentProcess(417)
> SEVERE: Exception occurred
> org.apache.uima.analysis_engine.AnalysisEngineProcessException: Annotator
> processing failed.
> at org.apache.uima.ruta.engine.RutaEngine.process(RutaEngine.java:496)
> at
> org.apache.uima.analysis_component.JCasAnnotator_ImplBase.process(JCasAnnotator_ImplBase.java:48)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.callAnalysisComponentProcess(PrimitiveAnalysisEngine_impl.java:385)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.processAndOutputNewCASes(PrimitiveAnalysisEngine_impl.java:309)
> at
> org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.process(AnalysisEngineImplBase.java:267)
> at org.apache.uima.ruta.engine.Ruta.apply(Ruta.java:75)
> at org.apache.uima.ruta.engine.Ruta.apply(Ruta.java:83)
> at
> edu.uth.clamp.nlp.attr.ast.LinearAssertion.main(LinearAssertion.java:610)
> Caused by: java.lang.IllegalArgumentException: Not able to resolve type:
> animal
> at
> org.apache.uima.ruta.expression.type.SimpleTypeExpression.getType(SimpleTypeExpression.java:47)
> at
> org.apache.uima.ruta.action.AbstractMarkAction.createAnnotation(AbstractMarkAction.java:42)
> at org.apache.uima.ruta.action.MarkAction.execute(MarkAction.java:57)
> at
> org.apache.uima.ruta.rule.AbstractRuleElement.apply(AbstractRuleElement.java:130)
> at
> org.apache.uima.ruta.rule.RuleElementCaretaker.applyRuleElements(RuleElementCaretaker.java:111)
> at
> org.apache.uima.ruta.rule.ComposedRuleElement.applyRuleElements(ComposedRuleElement.java:559)
> at
> org.apache.uima.ruta.rule.AbstractRuleElement.doneMatching(AbstractRuleElement.java:84)
> at
> org.apache.uima.ruta.rule.ComposedRuleElement.fallback(ComposedRuleElement.java:480)
> at
> org.apache.uima.ruta.rule.ComposedRuleElement.fallbackContinue(ComposedRuleElement.java:384)
> at
> org.apache.uima.ruta.rule.RutaRuleElement.startMatch(RutaRuleElement.java:106)
> at
> org.apache.uima.ruta.rule.ComposedRuleElement.startMatch(ComposedRuleElement.java:73)
> at org.apache.uima.ruta.rule.RutaRule.apply(RutaRule.java:47)
> at org.apache.uima.ruta.rule.RutaRule.apply(RutaRule.java:40)
> at org.apache.uima.ruta.rule.RutaRule.apply(RutaRule.java:29)
> at org.apache.uima.ruta.RutaScriptBlock.apply(RutaScriptBlock.java:63)
> at org.apache.uima.ruta.RutaModule.apply(RutaModule.java:48)
> at org.apache.uima.ruta.engine.RutaEngine.process(RutaEngine.java:494)
> ... 7 more
> org.apache.uima.analysis_engine.AnalysisEngineProcessException: Annotator
> processing failed.
> at org.apache.uima.ruta.engine.RutaEngine.process(RutaEngine.java:496)
> at
> org.apache.uima.analysis_component.JCasAnnotator_ImplBase.process(JCasAnnotator_ImplBase.java:48)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.callAnalysisComponentProcess(PrimitiveAnalysisEngine_impl.java:385)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.processAndOutputNewCASes(PrimitiveAnalysisEngine_impl.java:309)
> at
> org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.process(AnalysisEngineImplBase.java:267)
> at org.apache.uima.ruta.engine.Ruta.apply(Ruta.java:75)
> at org.apache.uima.ruta.engine.Ruta.apply(Ruta.java:83)
> at
> edu.uth.clamp.nlp.attr.ast.LinearAssertion.main(LinearAssertion.java:610)
> Caused by: java.lang.IllegalArgumentException: Not able to resolve type:
> animal
> at
> org.apache.uima.ruta.expression.type.SimpleTypeExpression.getType(SimpleTypeExpression.java:47)
> at
> org.apache.uima.ruta.action.AbstractMarkAction.createAnnotation(AbstractMarkAction.java:42)
> at org.apache.uima.ruta.action.MarkAction.execute(MarkAction.java:57)
> at
> org.apache.uima.ruta.rule.AbstractRuleElement.apply(AbstractRuleElement.java:130)
> at
> org.apache.uima.ruta.rule.RuleElementCaretaker.applyRuleElements(RuleElementCaretaker.java:111)
> at
> org.apache.uima.ruta.rule.ComposedRuleElement.applyRuleElements(ComposedRuleElement.java:559)
> at
> org.apache.uima.ruta.rule.AbstractRuleElement.doneMatching(AbstractRuleElement.java:84)
> at
> org.apache.uima.ruta.rule.ComposedRuleElement.fallback(ComposedRuleElement.java:480)
> at
> org.apache.uima.ruta.rule.ComposedRuleElement.fallbackContinue(ComposedRuleElement.java:384)
> at
> org.apache.uima.ruta.rule.RutaRuleElement.startMatch(RutaRuleElement.java:106)
> at
> org.apache.uima.ruta.rule.ComposedRuleElement.startMatch(ComposedRuleElement.java:73)
> at org.apache.uima.ruta.rule.RutaRule.apply(RutaRule.java:47)
> at org.apache.uima.ruta.rule.RutaRule.apply(RutaRule.java:40)
> at org.apache.uima.ruta.rule.RutaRule.apply(RutaRule.java:29)
> at org.apache.uima.ruta.RutaScriptBlock.apply(RutaScriptBlock.java:63)
> at org.apache.uima.ruta.RutaModule.apply(RutaModule.java:48)
> at org.apache.uima.ruta.engine.RutaEngine.process(RutaEngine.java:494)
> ... 7 more
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