[OMPI devel] [Fwd: LAM: undefined reference to `mpi_bcast__']

[Eugene Loh]

I guess a bunch of you already saw this on the lam mail alias.  The part that caught my eye was a user choosing LAM over OMPI due to lack of "clear documentation" for OMPI. -------- Original Message -------- Subject: LAM: undefined reference to `mpi_bcast__' Date: Thu, 28 May 2009 08:32:46 -0700 (PDT) From: Silviu Groza <silviugr...@yahoo.com> Reply-To: General LAM/MPI mailing list <l...@lam-mpi.org> To: l...@lam-mpi.org Hello, I am trying to install a qauntum chemistry program (Dalton) with LAM-MPI under PelicanHPC. PelicanHPC has both LAM-MPI as well as OpenMPI. I have chosen LAM-MPI due to lack of clear documentation of OpenMPI, and because LAM-MPI environment is the default on PelicanHPC. So, I have the following outputs: user@pelican:~$ mpif77 -c foo.c user@pelican:~$ mpif77 -show gfortran -I/usr/lib/lam/include -pthread -L/usr/lib/lam/lib -llammpio -llamf77mpi -lmpi -llam -lutil -ldl user@pelican:~$ mpicc -show gcc -I/usr/lib/lam/include -pthread -L/usr/lib/lam/lib -llammpio -llamf77mpi -lmpi -llam -lutil -ldl Therefore, my Makefile.config is: ARCH = linux # # CPPFLAGS = -DVAR_G77 -DSYS_LINUX -DVAR_MFDS -D'INSTALL_WRKMEM=100000000' -D'INSTALL_BASDIR="/mnt/sda8/home/dan/Daltonsubpelican/dalton-2.0/basis/"' -DVAR_MPI -DIMPLICIT_NONE F77 = mpif77 CC = mpicc RM = rm -f FFLAGS = -march=x86-64 -O3 -ffast-math -fexpensive-optimizations -funroll-loops -fno-range-check -fsecond-underscore SAFEFFLAGS = -march=x86-64 -O3 -ffast-math -fexpensive-optimizations -funroll-loops -fno-range-check -fsecond-underscore CFLAGS = -march=x86-64 -O3 -ffast-math -fexpensive-optimizations -funroll-loops -std=c99 -DRESTRICT=restrict INCLUDES = -I../include LIBS = -L/usr/lib -llapack -lblas INSTALLDIR = /mnt/sda8/home/dalton-2.0/bin PDPACK_EXTRAS = linpack.o eispack.o GP_EXTRAS = AR = ar ARFLAGS = rvs # flags for ftnchek on Dalton /hjaaj CHEKFLAGS = -nopure -nopretty -nocommon -nousage -noarray -notruncation -quiet -noargumants -arguments=number -usage=var-unitialized # -usage=var-unitialized:arg-const-modified:arg-alias # -usage=var-unitialized:var-set-unused:arg-unused:arg-const-modified:arg-alias # default : linuxparallel.x # # Parallel initialization # MPI_INCLUDE_DIR = -I/usr/lib/lam/include MPI_LIB_PATH = -L/usr/lib/lam/lib MPI_LIB = -lmpi # # # Suffix rules # hjaaj Oct 04: .g is a "cheat" suffix, for debugging. # 'make x.g' will create x.o from x.F or x.c with -g debug flag set. # .SUFFIXES : .F .o .c .i .g .F.o: $(F77) $(INCLUDES) $(CPPFLAGS) $(FFLAGS) -c $*.F .F.g: $(F77) $(INCLUDES) $(CPPFLAGS) $(FFLAGS) -g -c $*.F .c.o: $(CC) $(INCLUDES) $(CPPFLAGS) $(CFLAGS) -c $*.c .c.g: $(CC) $(INCLUDES) $(CPPFLAGS) $(CFLAGS) -g -c $*.c .F.i: $(F77) $(INCLUDES) $(CPPFLAGS) -E $*.F > $*.i and the errors are: ---------------> Linking parallel dalpar.x ... mpif77 -march=x86-64 -O3 -ffast-math -fexpensive-optimizations -funroll-loops -fno-range-check -fsecond-underscore \ -o /mnt/sda8/home/dalton-2.0/bin/dalpar.x abacus/dalton.o cc/crayio.o abacus/linux_mem_allo.o \ abacus/herpar.o eri/eri2par.o amfi/amfi.o amfi/symtra.o -Labacus -labacus -Lrsp -lrsp -Lsirius -lsirius -labacus -Leri -leri -Ldensfit -ldensfit -Lcc -lcc -Ldft -ldft -Lgp -lgp -Lpdpack -lpdpack -L/usr/lib -llapack -lblas \ -L/usr/lib/lam/lib -lmpi abacus/dalton.o: In function `getmmbas_': dalton.F:(.text+0x379): undefined reference to `mpi_bcast__' abacus/dalton.o: In function `MAIN__': dalton.F:(.text+0x739): undefined reference to `mpi_bcast__' abacus/libabacus.a(dalgnr.o): In function `parion_': dalgnr.F:(.text+0x223): undefined reference to `mpi_bcast__' dalgnr.F:(.text+0x3ea): undefined reference to `mpi_bcast__' dalgnr.F:(.text+0x438): undefined reference to `mpi_bcast__' abacus/libabacus.a(dalgnr.o):dalgnr.F:(.text+0x686): more undefined references to `mpi_bcast__' follow dft/libdft.a(dft_ksm.o): In function `ksmcollect_': dft_ksm.F:(.text+0x8c): undefined reference to `mpi_reduce__' dft_ksm.F:(.text+0xd7): undefined reference to `mpi_reduce__' dft/libdft.a(dft_ksm.o): In function `ksmsync_': dft_ksm.F:(.text+0x12c): undefined reference to `mpi_bcast__' dft/libdft.a(dft_ksm.o): In function `kick_ksm_slaves_alive__': dft_ksm.F:(.text+0x27d): undefined reference to `mpi_bcast__' dft_ksm.F:(.text+0x29f): undefined reference to `mpi_bcast__' dft/libdft.a(dft_mag.o): In function `dft_suscep_collect__': dft_mag.F:(.text+0x21b0): undefined reference to `mpi_reduce__' dft/libdft.a(dft_mag.o): In function `kick_slaves_suscep__': dft_mag.F:(.text+0x231d): undefined reference to `mpi_bcast__' dft_mag.F:(.text+0x233f): undefined reference to `mpi_bcast__' dft/libdft.a(dft_mag.o): In function `dft_brhs_collect__': dft_mag.F:(.text+0x23e0): undefined reference to `mpi_reduce__' dft/libdft.a(dft_mag.o): In function `dft_brhs_slave__': dft_mag.F:(.text+0x2480): undefined reference to `mpi_bcast__' dft_mag.F:(.text+0x24a2): undefined reference to `mpi_bcast__' dft/libdft.a(dft_mag.o): In function `kick_slaves_brhs__': dft_mag.F:(.text+0x25e5): undefined reference to `mpi_bcast__' dft_mag.F:(.text+0x2607): undefined reference to `mpi_bcast__' dft_mag.F:(.text+0x2629): undefined reference to `mpi_bcast__' dft/libdft.a(dft_mag.o):dft_mag.F:(.text+0x264b): more undefined references to `mpi_bcast__' follow dft/libdft.a(dft_grad.o): In function `gradslave_collect__': dft_grad.F:(.text+0x11f0): undefined reference to `mpi_reduce__' dft/libdft.a(dft_grad.o): In function `kick_slaves_grad__': dft_grad.F:(.text+0x135d): undefined reference to `mpi_bcast__' dft_grad.F:(.text+0x137f): undefined reference to `mpi_bcast__' dft/libdft.a(dft_hes.o): In function `dft_hed_collect__': dft_hes.F:(.text+0x7ef): undefined reference to `mpi_reduce__' dft_hes.F:(.text+0x848): undefined reference to `mpi_reduce__' dft/libdft.a(dft_hes.o): In function `dfthed_slave__': dft_hes.F:(.text+0x924): undefined reference to `mpi_bcast__' dft_hes.F:(.text+0x967): undefined reference to `mpi_bcast__' dft/libdft.a(dft_hes.o): In function `kick_slaves_hed__': dft_hes.F:(.text+0xad5): undefined reference to `mpi_bcast__' dft_hes.F:(.text+0xaf7): undefined reference to `mpi_bcast__' dft_hes.F:(.text+0xb19): undefined reference to `mpi_bcast__' dft/libdft.a(dft_hes.o):dft_hes.F:(.text+0xb59): more undefined references to `mpi_bcast__' follow dft/libdft.a(dft_hes.o): In function `dft_hesstat_collect__': dft_hes.F:(.text+0xbd0): undefined reference to `mpi_reduce__' dft/libdft.a(dft_hes.o): In function `dft_hesstat_slave__': dft_hes.F:(.text+0xcb8): undefined reference to `mpi_bcast__' dft_hes.F:(.text+0xcf9): undefined reference to `mpi_bcast__' dft_hes.F:(.text+0xd43): undefined reference to `mpi_bcast__' dft_hes.F:(.text+0xd77): undefined reference to `mpi_bcast__' dft/libdft.a(dft_hes.o): In function `kick_slaves_hesstat__': dft_hes.F:(.text+0xee2): undefined reference to `mpi_bcast__' dft/libdft.a(dft_hes.o):dft_hes.F:(.text+0xf06): more undefined references to `mpi_bcast__' follow dft/libdft.a(dft_int.o): In function `dftintcollect_': dft_int.F:(.text+0x42): undefined reference to `mpi_reduce__' dft/libdft.a(dft_int.o): In function `dftintbcast_': dft_int.F:(.text+0x78): undefined reference to `mpi_bcast__' dft_int.F:(.text+0x9a): undefined reference to `mpi_bcast__' dft_int.F:(.text+0xbc): undefined reference to `mpi_bcast__' dft_int.F:(.text+0xde): undefined reference to `mpi_bcast__' dft_int.F:(.text+0x100): undefined reference to `mpi_bcast__' dft/libdft.a(dft_int.o):dft_int.F:(.text+0x122): more undefined references to `mpi_bcast__' follow gp/libgp.a(gptrygve.o): In function `quit_': gptrygve.F:(.text+0x581b): undefined reference to `mpi_abort__' gp/libgp.a(mpimacro.o): In function `mpi_myfail__': mpimacro.F:(.text+0x21): undefined reference to `mpi_error_class__' gp/libgp.a(mpimacro.o): In function `mpixsend_': mpimacro.F:(.text+0xb57): undefined reference to `mpi_send__' gp/libgp.a(mpimacro.o): In function `mpixrecv_': mpimacro.F:(.text+0xe8f): undefined reference to `mpi_recv__' mpimacro.F:(.text+0xf49): undefined reference to `mpi_recv__' gp/libgp.a(mpimacro.o): In function `mpixbcast_': mpimacro.F:(.text+0x10d7): undefined reference to `mpi_bcast__' gp/libgp.a(mpimacro.o): In function `mpixfinalize_': mpimacro.F:(.text+0x1260): undefined reference to `mpi_finalize__' gp/libgp.a(mpimacro.o): In function `mpixinit_': mpimacro.F:(.text+0x1296): undefined reference to `mpi_init__' mpimacro.F:(.text+0x12bf): undefined reference to `mpi_comm_rank__' mpimacro.F:(.text+0x12e8): undefined reference to `mpi_comm_size__' collect2: ld returned 1 exit status mpif77: No such file or directory make: *** [linuxparallel.x] Error 1 As you can see, I also get the error "mpif77: No such file or directory". Please look at the MPI_INCLUDE_DIR ,MPI_LIB_PATH and MPI_LIB in Makefile.config, because I susspect that the paths are wrong. Regards, Silviu _______________________________________________ This list is archived at http://www.lam-mpi.org/MailArchives/lam/