Ralph, just out curiosity: is there a lustre file system on the machine and is this a static build ?
Thanks Edgar On 10/29/2012 9:17 PM, Ralph Castain wrote: > Hmmm...I added that directory and tried this on odin (which is an IB-based > machine). Any MPI proc segfaults: > > Core was generated by `./hello'. > Program terminated with signal 11, Segmentation fault. > w#0 _sysio_p_validate (pno=0x0, intnt=0x0, path=0x0) at src/inode.c:574 > 574 src/inode.c: No such file or directory. > in src/inode.c > (gdb) where > #0 _sysio_p_validate (pno=0x0, intnt=0x0, path=0x0) at src/inode.c:574 > #1 0x00002aaaabd3f3e9 in _sysio_path_walk (parent=0x0, nd=0x7fffffffd8e0) at > src/namei.c:216 > #2 0x00002aaaabd3faad in _sysio_namei (parent=0x0, path=<value optimized > out>, flags=0, intnt=0x7fffffffd950, pnop=0x7fffffffd970) at src/namei.c:505 > #3 0x00002aaaabd3fd98 in open (path=0x2aaaac24280f > "/sys/devices/system/node", flags=<value optimized out>) at src/open.c:179 > #4 0x00002aaaabd43d5b in opendir (name=0x2aaaac24280f > "/sys/devices/system/node") at src/stddir.c:60 > #5 0x00002aaaac241825 in numa_max_node () from /usr/lib64/libnuma.so.1 > #6 0x00002aaaac241d13 in numa_init () from /usr/lib64/libnuma.so.1 > #7 0x00002aaaaaab845b in call_init () from /lib64/ld-linux-x86-64.so.2 > #8 0x00002aaaaaab8565 in _dl_init_internal () from > /lib64/ld-linux-x86-64.so.2 > #9 0x00002aaaaaaabaaa in _dl_start_user () from /lib64/ld-linux-x86-64.so.2 > #10 0x0000000000000001 in ?? () > #11 0x00007fffffffe03c in ?? () > #12 0x0000000000000000 in ?? () > > I got the same thing whether I excluded openib or not. I then ran on my Linux > cluster, which doesn't have IB at all - and it ran fine. Also runs clean on > the Mac. However, in both those cases, I had left IO romio enabled. > > Now on odin, I always disable-io-romio. So I tried deliberately enabling it, > and everything works. So this appears to be something that the IO work has > broken. > > Edgar: can you please fix --disable-io-romio? > > Thanks > Ralph > > > > > On Oct 29, 2012, at 11:55 AM, Edgar Gabriel <gabr...@cs.uh.edu> wrote: > >> I'm sorry to add one more thing to the list, but beyond this file, it >> looks like also the entire ompi/mca/common/verbs/ directory is also >> missing in the 1.7 branch, but is required to compile the bcoll >> framework. It is there in the trunk, but missing in the 1.7 branch... >> >> Thanks >> Edgar >> >> >> On 10/26/2012 5:31 PM, Ralph Castain wrote: >>> Okay, I'll fix for tonights tarball. >>> >>> Thanks! >>> >>> On Oct 26, 2012, at 3:28 PM, "Shamis, Pavel" <sham...@ornl.gov> wrote: >>> >>>> There is a bug in makefile. The file existing in svn, but it is not listed >>>> in the Makefile.am. As a result, it wasn't pulled to the tarball. >>>> >>>> Pavel (Pasha) Shamis >>>> --- >>>> Computer Science Research Group >>>> Computer Science and Math Division >>>> Oak Ridge National Laboratory >>>> >>>> >>>> >>>> >>>> >>>> >>>> On Oct 26, 2012, at 2:33 PM, Edgar Gabriel wrote: >>>> >>>> we have trouble compiling the 1.7 series on a machine in Dresden. >>>> Specifically, we receive an error message when compiling the >>>> bcol/iboffload component (other infiniband components compile fine). >>>> >>>> Any idea/suggestions what we might be doing wrong or what to look for? >>>> >>>> make[2]: Entering directory >>>> `/home/h2/gabriel/openmpi-1.7rc4/ompi/mca/bcol/iboffload' >>>> CC bcol_iboffload_module.lo >>>> CC bcol_iboffload_mca.lo >>>> CC bcol_iboffload_endpoint.lo >>>> CC bcol_iboffload_frag.lo >>>> In file included from bcol_iboffload_frag.c:16:0: >>>> bcol_iboffload.h:46:36: fatal error: bcol_iboffload_qp_info.h: No such >>>> file or directory >>>> compilation terminated. >>>> make[2]: *** [bcol_iboffload_frag.lo] Error 1 >>>> make[2]: *** Waiting for unfinished jobs.... >>>> In file included from bcol_iboffload_mca.c:18:0: >>>> bcol_iboffload.h:46:36: fatal error: bcol_iboffload_qp_info.h: No such >>>> file or directory >>>> compilation terminated. >>>> make[2]: *** [bcol_iboffload_mca.lo] Error 1 >>>> In file included from bcol_iboffload_endpoint.c:23:0: >>>> bcol_iboffload.h:46:36: fatal error: bcol_iboffload_qp_info.h: No such >>>> file or directory >>>> compilation terminated. >>>> make[2]: *** [bcol_iboffload_endpoint.lo] Error 1 >>>> In file included from bcol_iboffload_module.c:39:0: >>>> bcol_iboffload.h:46:36: fatal error: bcol_iboffload_qp_info.h: No such >>>> file or directory >>>> compilation terminated. >>>> make[2]: *** [bcol_iboffload_module.lo] Error 1 >>>> make[2]: Leaving directory >>>> `/home/h2/gabriel/openmpi-1.7rc4/ompi/mca/bcol/iboffload' >>>> make[1]: *** [all-recursive] Error 1 >>>> make[1]: Leaving directory `/home/h2/gabriel/openmpi-1.7rc4/ompi' >>>> make: *** [all-recursive] Error 1 >>>> >>>> Thanks >>>> Edgar >>>> >>>> -- >>>> Edgar Gabriel >>>> Associate Professor >>>> Parallel Software Technologies Lab http://pstl.cs.uh.edu >>>> Department of Computer Science University of Houston >>>> Philip G. Hoffman Hall, Room 524 Houston, TX-77204, USA >>>> Tel: +1 (713) 743-3857 Fax: +1 (713) 743-3335 >>>> >>>> <signature.asc>_______________________________________________ >>>> devel mailing list >>>> de...@open-mpi.org<mailto:de...@open-mpi.org> >>>> http://www.open-mpi.org/mailman/listinfo.cgi/devel >>>> >>>> >>>> _______________________________________________ >>>> devel mailing list >>>> de...@open-mpi.org >>>> http://www.open-mpi.org/mailman/listinfo.cgi/devel >>> >>> >>> _______________________________________________ >>> devel mailing list >>> de...@open-mpi.org >>> http://www.open-mpi.org/mailman/listinfo.cgi/devel >>> >> >> -- >> Edgar Gabriel >> Associate Professor >> Parallel Software Technologies Lab http://pstl.cs.uh.edu >> Department of Computer Science University of Houston >> Philip G. Hoffman Hall, Room 524 Houston, TX-77204, USA >> Tel: +1 (713) 743-3857 Fax: +1 (713) 743-3335 >> >> _______________________________________________ >> devel mailing list >> de...@open-mpi.org >> http://www.open-mpi.org/mailman/listinfo.cgi/devel > > > _______________________________________________ > devel mailing list > de...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/devel > -- Edgar Gabriel Associate Professor Parallel Software Technologies Lab http://pstl.cs.uh.edu Department of Computer Science University of Houston Philip G. Hoffman Hall, Room 524 Houston, TX-77204, USA Tel: +1 (713) 743-3857 Fax: +1 (713) 743-3335
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