?? Just so this old fossilized brain gets this right: you are saying there was a 64s pause before the hwloc error appeared, and then another 64s pause after the second server_setup_fork message appeared?
If that’s true, then I’m chasing the wrong problem - it sounds like something is messed up in the mpirun startup. Did you have more than one node in the allocation by chance? I’m wondering if we are getting held up by something in the daemon launch/callback area. > On Sep 20, 2015, at 4:08 PM, Paul Hargrove <phhargr...@lbl.gov> wrote: > > Ralph, > > Still failing with that patch, but with the addition of a fairly long pause > (64s) before the first error message appears, and again after the second > "server setup_fork" (64s again) > > New output is attached. > > -Paul > > On Sun, Sep 20, 2015 at 2:15 PM, Ralph Castain <r...@open-mpi.org > <mailto:r...@open-mpi.org>> wrote: > Argh - found a typo in the output line. Could you please try the attached > patch and do it again? This might fix it, but if not it will provide me with > some idea of the returned error. > > Thanks > Ralph > > >> On Sep 20, 2015, at 12:40 PM, Paul Hargrove <phhargr...@lbl.gov >> <mailto:phhargr...@lbl.gov>> wrote: >> >> Yes, it is definitely at 10. >> Another attempt is attached. >> -Paul >> >> On Sun, Sep 20, 2015 at 8:19 AM, Ralph Castain <r...@open-mpi.org >> <mailto:r...@open-mpi.org>> wrote: >> Paul - can you please confirm that you gave mpirun a level of 10 for the >> pmix_base_verbose param? This output isn’t what I would have expected from >> that level - it looks more like the verbosity was set to 5, and so the error >> number isn’t printed. >> >> Thanks >> Ralph >> >> >>> On Sep 20, 2015, at 3:42 AM, Gilles Gouaillardet >>> <gilles.gouaillar...@gmail.com <mailto:gilles.gouaillar...@gmail.com>> >>> wrote: >>> >>> Paul, >>> >>> I do not remember it like that ... >>> >>> at that time, the issue in ompi was that the global errno was uses instead >>> of the per thread errno. >>> though the man pages tells -mt should be used fir multithreaded apps, you >>> tried -D_REENTRANT on all your platforms, and it was enough to get the >>> expected result. >>> >>> I just wanted to check pmix1xx (sub)configure did correctly pass the >>> -D_REENTRANT flag, and it does. so this is very likely a new and unrelated >>> error >>> >>> Cheers, >>> >>> Gilles >>> >>> On Sunday, September 20, 2015, Paul Hargrove <phhargr...@lbl.gov >>> <mailto:phhargr...@lbl.gov>> wrote: >>> Gilles, >>> >>> Yes every $CC invocation in opal/mca/pmix/pmix1xx includes "-D_REENTRANT". >>> However, they don't include "-mt". >>> I believe we concluded (when we had problems previously) that "-mt" was the >>> proper flag (at compile and link) for multi-threaded with the Studio >>> compilers. >>> >>> -Paul >>> >>> On Sat, Sep 19, 2015 at 11:29 PM, Gilles Gouaillardet >>> <gilles.gouaillar...@gmail.com <>> wrote: >>> Paul, >>> >>> Can you please double check pmix1xx is compiled with -D_REENTRANT ? >>> We ran into similar issues in the past, and they only occurred with Solaris >>> >>> Cheers, >>> >>> Gilles >>> >>> >>> On Sunday, September 20, 2015, Paul Hargrove <phhargr...@lbl.gov <>> wrote: >>> Ralph, >>> The output from the requested run is attached. >>> -Paul >>> >>> On Sat, Sep 19, 2015 at 9:46 PM, Ralph Castain <r...@open-mpi.org <>> wrote: >>> Ah, okay - that makes more sense. I’ll have to let Brice see if he can >>> figure out how to silence the hwloc error message as I can’t find where it >>> came from. The other errors are real and are the reason why the job was >>> terminated. >>> >>> The problem is that we are trying to establish a communication between the >>> app and the daemon via unix domain socket, and we failed to do so. The >>> error tells me that we were able to create and connect to the socket, but >>> failed when the daemon tried to do a blocking send to the app. >>> >>> Can you rerun it with -mca pmix_base_verbose 10? It will tell us the value >>> of the error number that was returned >>> >>> Thanks >>> Ralph >>> >>> >>>> On Sep 19, 2015, at 9:37 PM, Paul Hargrove <phhargr...@lbl.gov <>> wrote: >>>> >>>> Ralph, >>>> >>>> No it did not run. >>>> The complete output (which I really should have included in the first >>>> place) is below. >>>> >>>> -Paul >>>> >>>> $ mpirun -mca btl sm,self -np 2 examples/ring_c' >>>> Error opening /devices/pci@0,0:reg: Permission denied >>>> [pcp-d-3:26054] PMIX ERROR: ERROR in file >>>> /export/home/phargrov/OMPI/openmpi-master-solaris11-x64-ss12u3/openmpi-dev-2559-g567c9e3/opal/mca/pmix/pmix1xx/pmix/src/client/pmix_client.c >>>> at line 181 >>>> [pcp-d-3:26053] PMIX ERROR: UNREACHABLE in file >>>> /export/home/phargrov/OMPI/openmpi-master-solaris11-x64-ss12u3/openmpi-dev-2559-g567c9e3/opal/mca/pmix/pmix1xx/pmix/src/server/pmix_server_listener.c >>>> at line 463 >>>> -------------------------------------------------------------------------- >>>> It looks like MPI_INIT failed for some reason; your parallel process is >>>> likely to abort. There are many reasons that a parallel process can >>>> fail during MPI_INIT; some of which are due to configuration or environment >>>> problems. This failure appears to be an internal failure; here's some >>>> additional information (which may only be relevant to an Open MPI >>>> developer): >>>> >>>> ompi_mpi_init: ompi_rte_init failed >>>> --> Returned "(null)" (-43) instead of "Success" (0) >>>> -------------------------------------------------------------------------- >>>> *** An error occurred in MPI_Init >>>> *** on a NULL communicator >>>> *** MPI_ERRORS_ARE_FATAL (processes in this communicator will now abort, >>>> *** and potentially your MPI job) >>>> [pcp-d-3:26054] Local abort before MPI_INIT completed completed >>>> successfully, but am not able to aggregate error messages, and not able to >>>> guarantee that all other processes were killed! >>>> ------------------------------------------------------- >>>> Primary job terminated normally, but 1 process returned >>>> a non-zero exit code.. Per user-direction, the job has been aborted. >>>> ------------------------------------------------------- >>>> -------------------------------------------------------------------------- >>>> mpirun detected that one or more processes exited with non-zero status, >>>> thus causing >>>> the job to be terminated. The first process to do so was: >>>> >>>> Process name: [[11371,1],0] >>>> Exit code: 1 >>>> -------------------------------------------------------------------------- >>>> >>>> On Sat, Sep 19, 2015 at 8:50 PM, Ralph Castain <r...@open-mpi.org <>> >>>> wrote: >>>> Paul, can you clarify something for me? The error in this case indicates >>>> that the client wasn’t able to reach the daemon - this should have >>>> resulted in termination of the job. Did the job actually run? >>>> >>>> >>>>> On Sep 18, 2015, at 2:50 AM, Ralph Castain <r...@open-mpi.org <>> wrote: >>>>> >>>>> I'm on travel right now, but it should be an easy fix when I return. >>>>> Sorry for the annoyance >>>>> >>>>> >>>>> On Thu, Sep 17, 2015 at 11:13 PM, Paul Hargrove <phhargr...@lbl.gov <>> >>>>> wrote: >>>>> Any suggestion how I (as a non-root user) can avoid seeing this hwloc >>>>> error message on every run? >>>>> >>>>> -Paul >>>>> >>>>> On Thu, Sep 17, 2015 at 11:00 PM, Gilles Gouaillardet <gil...@rist.or.jp >>>>> <>> wrote: >>>>> Paul, >>>>> >>>>> IIRC, the "Permission denied" is coming from hwloc that cannot collect >>>>> all the info it would like. >>>>> >>>>> Cheers, >>>>> >>>>> Gilles >>>>> >>>>> On 9/18/2015 2:34 PM, Paul Hargrove wrote: >>>>>> Tried tonight's master tarball on Solaris 11.2 on x86-64 with the Studio >>>>>> Compilers (default ILP32 output) and saw the following result >>>>>> >>>>>> $ mpirun -mca btl sm,self -np 2 examples/ring_c' >>>>>> Error opening /devices/pci@0,0:reg: Permission denied >>>>>> [pcp-d-4:00492] PMIX ERROR: ERROR in file >>>>>> /export/home/phargrov/OMPI/openmpi-master-solaris11-x86-ss12u3/openmpi-dev-2559-g567c9e3/opal/mca/pmix/pmix1xx/pmix/src/client/pmix_client.c >>>>>> at line 181 >>>>>> [pcp-d-4:00491] PMIX ERROR: UNREACHABLE in file >>>>>> /export/home/phargrov/OMPI/openmpi-master-solaris11-x86-ss12u3/openmpi-dev-2559-g567c9e3/opal/mca/pmix/pmix1xx/pmix/src/server/pmix_server_listener.c >>>>>> at line 463 >>>>>> >>>>>> I don't know if the Permission denied error is related to the subsequent >>>>>> PMIX errors, but any message that says "UNREACHABLE" is clearly worth >>>>>> reporting. >>>>>> >>>>>> -Paul >>>>>> >>>>>> -- >>>>>> Paul H. Hargrove <>phhargr...@lbl.gov <> >>>>>> Computer Languages & Systems Software (CLaSS) Group >>>>>> Computer Science Department Tel: +1-510-495-2352 >>>>>> <tel:%2B1-510-495-2352> >>>>>> Lawrence Berkeley National Laboratory Fax: +1-510-486-6900 >>>>>> <tel:%2B1-510-486-6900> >>>>>> >>>>>> _______________________________________________ >>>>>> devel mailing list >>>>>> de...@open-mpi.org <> >>>>>> Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/devel >>>>>> <http://www.open-mpi.org/mailman/listinfo.cgi/devel> >>>>>> Link to this post: >>>>>> http://www.open-mpi.org/community/lists/devel/2015/09/18074.php >>>>>> <http://www.open-mpi.org/community/lists/devel/2015/09/18074.php> >>>>> >>>>> _______________________________________________ >>>>> devel mailing list >>>>> de...@open-mpi.org <> >>>>> Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/devel >>>>> <http://www.open-mpi.org/mailman/listinfo.cgi/devel> >>>>> Link to this post: >>>>> http://www.open-mpi.org/community/lists/devel/2015/09/18075.php >>>>> <http://www.open-mpi.org/community/lists/devel/2015/09/18075.php> >>>>> >>>>> >>>>> >>>>> -- >>>>> Paul H. Hargrove phhargr...@lbl.gov <> >>>>> Computer Languages & Systems Software (CLaSS) Group >>>>> Computer Science Department Tel: +1-510-495-2352 >>>>> <tel:%2B1-510-495-2352> >>>>> Lawrence Berkeley National Laboratory Fax: +1-510-486-6900 >>>>> <tel:%2B1-510-486-6900> >>>>> _______________________________________________ >>>>> devel mailing list >>>>> de...@open-mpi.org <> >>>>> Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/devel >>>>> <http://www.open-mpi.org/mailman/listinfo.cgi/devel> >>>>> Link to this post: >>>>> http://www.open-mpi.org/community/lists/devel/2015/09/18076.php >>>>> <http://www.open-mpi.org/community/lists/devel/2015/09/18076.php> >>>>> >>>> >>>> >>>> _______________________________________________ >>>> devel mailing list >>>> de...@open-mpi.org <> >>>> Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/devel >>>> <http://www.open-mpi.org/mailman/listinfo.cgi/devel> >>>> Link to this post: >>>> http://www.open-mpi.org/community/lists/devel/2015/09/18078.php >>>> <http://www.open-mpi.org/community/lists/devel/2015/09/18078.php> >>>> >>>> >>>> >>>> -- >>>> Paul H. Hargrove phhargr...@lbl.gov <> >>>> Computer Languages & Systems Software (CLaSS) Group >>>> Computer Science Department Tel: +1-510-495-2352 >>>> <tel:%2B1-510-495-2352> >>>> Lawrence Berkeley National Laboratory Fax: +1-510-486-6900 >>>> <tel:%2B1-510-486-6900>_______________________________________________ >>>> devel mailing list >>>> de...@open-mpi.org <> >>>> Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/devel >>>> <http://www.open-mpi.org/mailman/listinfo.cgi/devel> >>>> Link to this post: >>>> http://www.open-mpi.org/community/lists/devel/2015/09/18080.php >>>> <http://www.open-mpi.org/community/lists/devel/2015/09/18080.php> >>> >>> _______________________________________________ >>> devel mailing list >>> de...@open-mpi.org <> >>> Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/devel >>> <http://www.open-mpi.org/mailman/listinfo.cgi/devel> >>> Link to this post: >>> http://www.open-mpi.org/community/lists/devel/2015/09/18081.php >>> <http://www.open-mpi.org/community/lists/devel/2015/09/18081.php> >>> >>> >>> >>> -- >>> Paul H. Hargrove phhargr...@lbl.gov <> >>> Computer Languages & Systems Software (CLaSS) Group >>> Computer Science Department Tel: +1-510-495-2352 >>> <tel:%2B1-510-495-2352> >>> Lawrence Berkeley National Laboratory Fax: +1-510-486-6900 >>> <tel:%2B1-510-486-6900> >>> _______________________________________________ >>> devel mailing list >>> de...@open-mpi.org <> >>> Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/devel >>> <http://www.open-mpi.org/mailman/listinfo.cgi/devel> >>> Link to this post: >>> http://www.open-mpi.org/community/lists/devel/2015/09/18083.php >>> <http://www.open-mpi.org/community/lists/devel/2015/09/18083.php> >>> >>> >>> >>> -- >>> Paul H. Hargrove phhargr...@lbl.gov <> >>> Computer Languages & Systems Software (CLaSS) Group >>> Computer Science Department Tel: +1-510-495-2352 >>> <tel:%2B1-510-495-2352> >>> Lawrence Berkeley National Laboratory Fax: +1-510-486-6900 >>> <tel:%2B1-510-486-6900>_______________________________________________ >>> devel mailing list >>> de...@open-mpi.org <mailto:de...@open-mpi.org> >>> Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/devel >>> <http://www.open-mpi.org/mailman/listinfo.cgi/devel> >>> Link to this post: >>> http://www.open-mpi.org/community/lists/devel/2015/09/18085.php >>> <http://www.open-mpi.org/community/lists/devel/2015/09/18085.php> >> >> _______________________________________________ >> devel mailing list >> de...@open-mpi.org <mailto:de...@open-mpi.org> >> Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/devel >> <http://www.open-mpi.org/mailman/listinfo.cgi/devel> >> Link to this post: >> http://www.open-mpi.org/community/lists/devel/2015/09/18086.php >> <http://www.open-mpi.org/community/lists/devel/2015/09/18086.php> >> >> >> >> -- >> Paul H. Hargrove phhargr...@lbl.gov >> <mailto:phhargr...@lbl.gov> >> Computer Languages & Systems Software (CLaSS) Group >> Computer Science Department Tel: +1-510-495-2352 >> <tel:%2B1-510-495-2352> >> Lawrence Berkeley National Laboratory Fax: +1-510-486-6900 >> <tel:%2B1-510-486-6900><typescript>_______________________________________________ >> devel mailing list >> de...@open-mpi.org <mailto:de...@open-mpi.org> >> Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/devel >> <http://www.open-mpi.org/mailman/listinfo.cgi/devel> >> Link to this post: >> http://www.open-mpi.org/community/lists/devel/2015/09/18087.php >> <http://www.open-mpi.org/community/lists/devel/2015/09/18087.php> > > _______________________________________________ > devel mailing list > de...@open-mpi.org <mailto:de...@open-mpi.org> > Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/devel > <http://www.open-mpi.org/mailman/listinfo.cgi/devel> > Link to this post: > http://www.open-mpi.org/community/lists/devel/2015/09/18088.php > <http://www.open-mpi.org/community/lists/devel/2015/09/18088.php> > > > > -- > Paul H. Hargrove phhargr...@lbl.gov > <mailto:phhargr...@lbl.gov> > Computer Languages & Systems Software (CLaSS) Group > Computer Science Department Tel: +1-510-495-2352 > Lawrence Berkeley National Laboratory Fax: +1-510-486-6900 > <typescript>_______________________________________________ > devel mailing list > de...@open-mpi.org > Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/devel > Link to this post: > http://www.open-mpi.org/community/lists/devel/2015/09/18089.php
