When I run this command from the compute node I have also that. But not when I run it from a login node (with the same machine file).
Cyril. Le 13/04/2017 à 16:22, r...@open-mpi.org a écrit : > We are asking all these questions because we cannot replicate your problem - > so we are trying to help you figure out what is different or missing from > your machine. When I run your cmd line on my system, I get: > > [rhc002.cluster:55965] MCW rank 24 bound to socket 0[core 0[hwt 0-1]]: > [BB/../../../../../../../../../../..][../../../../../../../../../../../..] > [rhc002.cluster:55965] MCW rank 25 bound to socket 1[core 12[hwt 0-1]]: > [../../../../../../../../../../../..][BB/../../../../../../../../../../..] > [rhc002.cluster:55965] MCW rank 26 bound to socket 0[core 1[hwt 0-1]]: > [../BB/../../../../../../../../../..][../../../../../../../../../../../..] > [rhc002.cluster:55965] MCW rank 27 bound to socket 1[core 13[hwt 0-1]]: > [../../../../../../../../../../../..][../BB/../../../../../../../../../..] > [rhc002.cluster:55965] MCW rank 28 bound to socket 0[core 2[hwt 0-1]]: > [../../BB/../../../../../../../../..][../../../../../../../../../../../..] > [rhc002.cluster:55965] MCW rank 29 bound to socket 1[core 14[hwt 0-1]]: > [../../../../../../../../../../../..][../../BB/../../../../../../../../..] > [rhc002.cluster:55965] MCW rank 30 bound to socket 0[core 3[hwt 0-1]]: > [../../../BB/../../../../../../../..][../../../../../../../../../../../..] > [rhc002.cluster:55965] MCW rank 31 bound to socket 1[core 15[hwt 0-1]]: > [../../../../../../../../../../../..][../../../BB/../../../../../../../..] > [rhc002.cluster:55965] MCW rank 32 bound to socket 0[core 4[hwt 0-1]]: > [../../../../BB/../../../../../../..][../../../../../../../../../../../..] > [rhc002.cluster:55965] MCW rank 33 bound to socket 1[core 16[hwt 0-1]]: > [../../../../../../../../../../../..][../../../../BB/../../../../../../..] > [rhc002.cluster:55965] MCW rank 34 bound to socket 0[core 5[hwt 0-1]]: > [../../../../../BB/../../../../../..][../../../../../../../../../../../..] > [rhc002.cluster:55965] MCW rank 35 bound to socket 1[core 17[hwt 0-1]]: > [../../../../../../../../../../../..][../../../../../BB/../../../../../..] > [rhc002.cluster:55965] MCW rank 36 bound to socket 0[core 6[hwt 0-1]]: > [../../../../../../BB/../../../../..][../../../../../../../../../../../..] > [rhc002.cluster:55965] MCW rank 37 bound to socket 1[core 18[hwt 0-1]]: > [../../../../../../../../../../../..][../../../../../../BB/../../../../..] > [rhc002.cluster:55965] MCW rank 38 bound to socket 0[core 7[hwt 0-1]]: > [../../../../../../../BB/../../../..][../../../../../../../../../../../..] > [rhc002.cluster:55965] MCW rank 39 bound to socket 1[core 19[hwt 0-1]]: > [../../../../../../../../../../../..][../../../../../../../BB/../../../..] > [rhc002.cluster:55965] MCW rank 40 bound to socket 0[core 8[hwt 0-1]]: > [../../../../../../../../BB/../../..][../../../../../../../../../../../..] > [rhc002.cluster:55965] MCW rank 41 bound to socket 1[core 20[hwt 0-1]]: > [../../../../../../../../../../../..][../../../../../../../../BB/../../..] > [rhc002.cluster:55965] MCW rank 42 bound to socket 0[core 9[hwt 0-1]]: > [../../../../../../../../../BB/../..][../../../../../../../../../../../..] > [rhc002.cluster:55965] MCW rank 43 bound to socket 1[core 21[hwt 0-1]]: > [../../../../../../../../../../../..][../../../../../../../../../BB/../..] > [rhc002.cluster:55965] MCW rank 44 bound to socket 0[core 10[hwt 0-1]]: > [../../../../../../../../../../BB/..][../../../../../../../../../../../..] > [rhc002.cluster:55965] MCW rank 45 bound to socket 1[core 22[hwt 0-1]]: > [../../../../../../../../../../../..][../../../../../../../../../../BB/..] > [rhc002.cluster:55965] MCW rank 46 bound to socket 0[core 11[hwt 0-1]]: > [../../../../../../../../../../../BB][../../../../../../../../../../../..] > [rhc002.cluster:55965] MCW rank 47 bound to socket 1[core 23[hwt 0-1]]: > [../../../../../../../../../../../..][../../../../../../../../../../../BB] > [rhc001:197743] MCW rank 0 bound to socket 0[core 0[hwt 0-1]]: > [BB/../../../../../../../../../../..][../../../../../../../../../../../..] > [rhc001:197743] MCW rank 1 bound to socket 1[core 12[hwt 0-1]]: > [../../../../../../../../../../../..][BB/../../../../../../../../../../..] > [rhc001:197743] MCW rank 2 bound to socket 0[core 1[hwt 0-1]]: > [../BB/../../../../../../../../../..][../../../../../../../../../../../..] > [rhc001:197743] MCW rank 3 bound to socket 1[core 13[hwt 0-1]]: > [../../../../../../../../../../../..][../BB/../../../../../../../../../..] > [rhc001:197743] MCW rank 4 bound to socket 0[core 2[hwt 0-1]]: > [../../BB/../../../../../../../../..][../../../../../../../../../../../..] > [rhc001:197743] MCW rank 5 bound to socket 1[core 14[hwt 0-1]]: > [../../../../../../../../../../../..][../../BB/../../../../../../../../..] > [rhc001:197743] MCW rank 6 bound to socket 0[core 3[hwt 0-1]]: > [../../../BB/../../../../../../../..][../../../../../../../../../../../..] > [rhc001:197743] MCW rank 7 bound to socket 1[core 15[hwt 0-1]]: > [../../../../../../../../../../../..][../../../BB/../../../../../../../..] > [rhc001:197743] MCW rank 8 bound to socket 0[core 4[hwt 0-1]]: > [../../../../BB/../../../../../../..][../../../../../../../../../../../..] > [rhc001:197743] MCW rank 9 bound to socket 1[core 16[hwt 0-1]]: > [../../../../../../../../../../../..][../../../../BB/../../../../../../..] > [rhc001:197743] MCW rank 10 bound to socket 0[core 5[hwt 0-1]]: > [../../../../../BB/../../../../../..][../../../../../../../../../../../..] > [rhc001:197743] MCW rank 11 bound to socket 1[core 17[hwt 0-1]]: > [../../../../../../../../../../../..][../../../../../BB/../../../../../..] > [rhc001:197743] MCW rank 12 bound to socket 0[core 6[hwt 0-1]]: > [../../../../../../BB/../../../../..][../../../../../../../../../../../..] > [rhc001:197743] MCW rank 13 bound to socket 1[core 18[hwt 0-1]]: > [../../../../../../../../../../../..][../../../../../../BB/../../../../..] > [rhc001:197743] MCW rank 14 bound to socket 0[core 7[hwt 0-1]]: > [../../../../../../../BB/../../../..][../../../../../../../../../../../..] > [rhc001:197743] MCW rank 15 bound to socket 1[core 19[hwt 0-1]]: > [../../../../../../../../../../../..][../../../../../../../BB/../../../..] > [rhc001:197743] MCW rank 16 bound to socket 0[core 8[hwt 0-1]]: > [../../../../../../../../BB/../../..][../../../../../../../../../../../..] > [rhc001:197743] MCW rank 17 bound to socket 1[core 20[hwt 0-1]]: > [../../../../../../../../../../../..][../../../../../../../../BB/../../..] > [rhc001:197743] MCW rank 18 bound to socket 0[core 9[hwt 0-1]]: > [../../../../../../../../../BB/../..][../../../../../../../../../../../..] > [rhc001:197743] MCW rank 19 bound to socket 1[core 21[hwt 0-1]]: > [../../../../../../../../../../../..][../../../../../../../../../BB/../..] > [rhc001:197743] MCW rank 20 bound to socket 0[core 10[hwt 0-1]]: > [../../../../../../../../../../BB/..][../../../../../../../../../../../..] > [rhc001:197743] MCW rank 21 bound to socket 1[core 22[hwt 0-1]]: > [../../../../../../../../../../../..][../../../../../../../../../../BB/..] > [rhc001:197743] MCW rank 22 bound to socket 0[core 11[hwt 0-1]]: > [../../../../../../../../../../../BB][../../../../../../../../../../../..] > [rhc001:197743] MCW rank 23 bound to socket 1[core 23[hwt 0-1]]: > [../../../../../../../../../../../..][../../../../../../../../../../../BB] > > Exactly as expected. You might check that you have libnuma and libnuma-devel > installed > > >> On Apr 13, 2017, at 6:50 AM, gil...@rist.or.jp wrote: >> >> OK thanks, >> >> we've had some issues in the past when Open MPI assumed that the (login) >> node running mpirun has the same topology than the other (compute) nodes. >> i just wanted to clear this scenario. >> >> Cheers, >> >> Gilles >> >> ----- Original Message ----- >>> I am using the 6886c12 commit. >>> I have no particular option for the configuration. >>> I launch my application in the same way as I presented in my firt >> email, >>> there is the exact line: mpirun -np 48 -machinefile mf -bind-to core >>> -report-bindings ./a.out >>> >>> lstopo does give the same output on both types on nodes. What is the >>> purpose of that? >>> >>> Thanks. >>> >>> >>> Cyril. >>> >>> Le 13/04/2017 à 15:24, gil...@rist.or.jp a écrit : >>>> Also, can you please run >>>> lstopo >>>> on both your login and compute nodes ? >>>> >>>> Cheers, >>>> >>>> Gilles >>>> >>>> >>>> ----- Original Message ----- >>>>> Can you be a bit more specific? >>>>> >>>>> - What version of Open MPI are you using? >>>>> - How did you configure Open MPI? >>>>> - How are you launching Open MPI applications? >>>>> >>>>> >>>>>> On Apr 13, 2017, at 9:08 AM, Cyril Bordage <cyril.bord...@inria.fr >>> >>>> wrote: >>>>>> >>>>>> Hi, >>>>>> >>>>>> now this bug happens also when I launch my mpirun command from the >>>>>> compute node. >>>>>> >>>>>> >>>>>> Cyril. >>>>>> >>>>>> Le 06/04/2017 à 05:38, r...@open-mpi.org a écrit : >>>>>>> I believe this has been fixed now - please let me know >>>>>>> >>>>>>>> On Mar 30, 2017, at 1:57 AM, Cyril Bordage <cyril.bordage@inria. >> fr >>>>> wrote: >>>>>>>> >>>>>>>> Hello, >>>>>>>> >>>>>>>> I am using the git version of MPI with "-bind-to core -report- >>>> bindings" >>>>>>>> and I get that for all processes: >>>>>>>> [miriel010:160662] MCW rank 0 not bound >>>>>>>> >>>>>>>> >>>>>>>> When I use an old version I get: >>>>>>>> [miriel010:44921] MCW rank 0 bound to socket 0[core 0[hwt 0]]: >>>>>>>> [B/././././././././././.][./././././././././././.] >>>>>>>> >>>>>>>> From git bisect the culprit seems to be: 48fc339 >>>>>>>> >>>>>>>> This bug happends only when I launch my mpirun command from a >>>> login node >>>>>>>> and not >>>>>>>> from a compute node. >>>>>>>> >>>>>>>> >>>>>>>> Cyril. >>>>>>>> _______________________________________________ >>>>>>>> devel mailing list >>>>>>>> devel@lists.open-mpi.org >>>>>>>> https://rfd.newmexicoconsortium.org/mailman/listinfo/devel >>>>>>> >>>>>>> _______________________________________________ >>>>>>> devel mailing list >>>>>>> devel@lists.open-mpi.org >>>>>>> https://rfd.newmexicoconsortium.org/mailman/listinfo/devel >>>>>>> >>>>>> _______________________________________________ >>>>>> devel mailing list >>>>>> devel@lists.open-mpi.org >>>>>> https://rfd.newmexicoconsortium.org/mailman/listinfo/devel >>>>> >>>>> >>>>> -- >>>>> Jeff Squyres >>>>> jsquy...@cisco.com >>>>> >>>>> _______________________________________________ >>>>> devel mailing list >>>>> devel@lists.open-mpi.org >>>>> https://rfd.newmexicoconsortium.org/mailman/listinfo/devel >>>> _______________________________________________ >>>> devel mailing list >>>> devel@lists.open-mpi.org >>>> https://rfd.newmexicoconsortium.org/mailman/listinfo/devel >>>> >>> _______________________________________________ >>> devel mailing list >>> devel@lists.open-mpi.org >>> https://rfd.newmexicoconsortium.org/mailman/listinfo/devel >>> >> _______________________________________________ >> devel mailing list >> devel@lists.open-mpi.org >> https://rfd.newmexicoconsortium.org/mailman/listinfo/devel > > _______________________________________________ > devel mailing list > devel@lists.open-mpi.org > https://rfd.newmexicoconsortium.org/mailman/listinfo/devel > _______________________________________________ devel mailing list devel@lists.open-mpi.org https://rfd.newmexicoconsortium.org/mailman/listinfo/devel
