Hi,
An LLNL TotalView user on a Mac reported that their MPI job was hanging inside
MPI_Init() when started under the control of TotalView. They were using Open
MPI 4.0.1, and TotalView was using the MPIR Interface (sorry, we don't support
the PMIx debugging hooks yet).
I was able to reproduce the hang on my own Linux system with my own build of
Open MPI 4.0.1, which I built with debug symbols. As far as I can tell, there
is some sort of race inside of Open MPI 4.0.1, because if I placed breakpoints
at certain points in the Open MPI code, and thus change the timing slightly,
that was enough to avoid the hang.
When the code hangs, it appeared as if one or more MPI processes are waiting
inside ompi_mpi_init() at line ompi_mpi_init.c#904 for a fence to be released.
In one of the runs, rank 0 was the only one the was hanging there (though I
have seen runs where two ranks were hung there).
Here's a backtrace of the first thread in the rank 0 process in the case where
one rank was hung:
d1.<> f 10.1 w
> 0 __nanosleep_nocancel PC=0x7ffff74e2efd, FP=0x7fffffffd1e0
> [/lib64/libc.so.6]
1 usleep PC=0x7ffff7513b2f, FP=0x7fffffffd200 [/lib64/libc.so.6]
2 ompi_mpi_init PC=0x7ffff7a64009, FP=0x7fffffffd350
[/home/jdelsign/src/tools-external/openmpi-4.0.1/ompi/runtime/ompi_mpi_init.c#904]
3 PMPI_Init PC=0x7ffff7ab0be4, FP=0x7fffffffd390
[/home/jdelsign/src/tools-external/openmpi-4.0.1-lid/ompi/mpi/c/profile/pinit.c#67]
4 main PC=0x00400c5e, FP=0x7fffffffd550 [/home/jdelsign/cpi.c#27]
5 __libc_start_main PC=0x7ffff7446b13, FP=0x7fffffffd610 [/lib64/libc.so.6]
6 _start PC=0x00400b04, FP=0x7fffffffd618 [/amd/home/jdelsign/cpi]
Here's the block of code where the thread is hung:
/* if we executed the above fence in the background, then
* we have to wait here for it to complete. However, there
* is no reason to do two barriers! */
if (background_fence) {
OMPI_LAZY_WAIT_FOR_COMPLETION(active);
} else if (!ompi_async_mpi_init) {
/* wait for everyone to reach this point - this is a hard
* barrier requirement at this time, though we hope to relax
* it at a later point */
if (NULL != opal_pmix.fence_nb) {
active = true;
OPAL_POST_OBJECT(&active);
if (OMPI_SUCCESS != (ret = opal_pmix.fence_nb(NULL, false,
fence_release, (void*)&active))) {
error = "opal_pmix.fence_nb() failed";
goto error;
}
OMPI_LAZY_WAIT_FOR_COMPLETION(active); <<<<----- STUCK HERE
WAITING FOR THE FENCE TO BE RELEASED
} else {
if (OMPI_SUCCESS != (ret = opal_pmix.fence(NULL, false))) {
error = "opal_pmix.fence() failed";
goto error;
}
}
}
And here is an aggregated backtrace of all of the processes and threads in the
job:
d1.<> f g w -g f+l
+/
+__clone : 5:12[0-3.2-3, p1.2-5]
|+start_thread
| +listen_thread@oob_tcp_listener.c#705 : 1:1[p1.5]
| |+__select_nocancel
| +listen_thread@ptl_base_listener.c#214 : 1:1[p1.3]
| |+__select_nocancel
| +progress_engine@opal_progress_threads.c#105 : 5:5[0-3.2, p1.4]
| |[email protected]#1632
| | [email protected]#167
| | +__poll_nocancel
| +progress_engine@pmix_progress_threads.c#108 : 5:5[0-3.3, p1.2]
| [email protected]#1632
| [email protected]#409
| +__epoll_wait_nocancel
+_start : 5:5[0-3.1, p1.1]
+__libc_start_main
[email protected]#27 : 4:4[0-3.1]
|[email protected]#67
|
+ompi_mpi_init@ompi_mpi_init.c#890<mailto:ompi_mpi_init@ompi_mpi_init.c#890> :
3:3[1-3.1] <<<<---- THE 3 OTHER MPI PROCS MADE IT PAST FENCE
| |+ompi_rte_wait_for_debugger@rte_orte_module.c#196
| | +opal_progress@opal_progress.c#251
| | +opal_progress_events@opal_progress.c#191
| | [email protected]#1632
| | [email protected]#167
| | +__poll_nocancel
|
+ompi_mpi_init@ompi_mpi_init.c#904<mailto:ompi_mpi_init@ompi_mpi_init.c#904> :
1:1[0.1] <<<<---- THE THREAD THAT IS STUCK
| +usleep
| +__nanosleep_nocancel
[email protected]#14 : 1:1[p1.1]
[email protected]#200
[email protected]#1632
[email protected]#167
+__poll_nocancel
d1.<>
I have tested Open MPI 4.0.2 dozens of times, and the hang does not seem to
happen. My concern is that if the problem is indeed a race, then it's possible
(but perhaps not likely) that the same race exists in Open MPI 4.0.2, but the
timing could be slightly different such that it doesn't hang using my simple
test setup. In other words, maybe I've just been "lucky" with my testing of
Open MPI 4.0.2 and have failed to provoke the hang yet.
My question is: Was this a known problem in Open MPI 4.0.1 that was fixed in
Open MPI 4.0.2?
Thanks, John D.
